Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.2e-48 196.1 90 100.0
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 1.2e-43 179.5 90 90.0
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 6.6e-39 163.7 90 82.2
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 8.6e-39 163.3 90 82.2
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.5e-35 152.5 90 78.9
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.0e-35 152.1 90 78.9
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 3.4e-35 151.4 90 77.8
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 4.4e-35 151.0 90 78.9
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 2.2e-34 148.7 90 74.4
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 3.7e-34 147.9 90 74.4
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.7e-34 147.9 88 76.1
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 6.4e-34 147.1 90 73.3
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 1.1e-33 146.4 88 75.0
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 1.1e-33 146.4 90 77.8
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.9e-33 145.6 90 75.6
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.4e-33 145.2 90 72.2
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.2e-33 144.8 92 73.9
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 3.2e-33 144.8 90 74.4
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 5.4e-33 144.1 88 75.0
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 9.2e-33 143.3 90 74.4
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 9.2e-33 143.3 88 73.9
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 1.2e-32 142.9 90 74.4
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.6e-32 142.5 90 72.2
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 2.1e-32 142.1 90 70.0
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 2.1e-32 142.1 90 73.3
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 4.6e-32 141.0 92 72.8
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.6e-32 141.0 90 73.3
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 1.0e-31 139.8 88 72.7
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 1.3e-31 139.4 88 70.5
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 1.3e-31 139.4 90 72.2
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 1.7e-31 139.0 90 72.2
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.7e-31 139.0 90 72.2
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 2.3e-31 138.7 90 71.1
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.3e-31 138.7 90 68.9
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 3.0e-31 138.3 89 68.5
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 3.0e-31 138.3 87 73.6
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 3.9e-31 137.9 90 72.2
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 3.9e-31 137.9 89 68.5
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 8.6e-31 136.7 89 68.5
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.5e-30 135.2 90 68.9
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 2.5e-30 135.2 90 68.9
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.3e-30 134.8 90 68.9
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 4.3e-30 134.4 87 69.0
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.3e-30 134.4 90 66.7
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 69.3
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 7.3e-30 133.7 88 70.5
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 7.3e-30 133.7 90 66.7
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.6e-29 132.5 87 69.0
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 2.1e-29 132.1 90 68.9
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.8e-29 131.7 87 70.1
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.8e-29 131.7 87 70.1
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 6.2e-29 130.6 89 70.8
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.4e-28 129.4 90 66.7
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.8e-28 129.0 90 66.7
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.8e-28 129.0 90 66.7
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.3e-28 128.6 90 66.7
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 3.1e-28 128.3 90 67.8
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.0e-28 127.9 89 68.5
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 6.8e-28 127.1 88 69.3
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 6.8e-28 127.1 90 66.7
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 6.8e-28 127.1 88 68.2
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 6.8e-28 127.1 90 65.6
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 6.8e-28 127.1 90 65.6
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 8.9e-28 126.7 88 68.2
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 8.9e-28 126.7 91 69.2
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 8.9e-28 126.7 90 65.6
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 8.9e-28 126.7 90 65.6
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 1.2e-27 126.3 90 63.3
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 1.2e-27 126.3 90 64.4
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.5e-27 125.9 87 63.2
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 2.0e-27 125.6 87 66.7
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 5.8e-27 124.0 90 63.3
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 7.5e-27 123.6 90 63.3
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 7.5e-27 123.6 90 63.3
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 7.5e-27 123.6 90 63.3
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 7.5e-27 123.6 90 63.3
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 7.5e-27 123.6 90 63.3
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 7.5e-27 123.6 87 66.7
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 9.9e-27 123.2 90 63.3
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 1.3e-26 122.9 88 65.9
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 1.7e-26 122.5 88 64.8
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 4.9e-26 120.9 90 63.3
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 4.9e-26 120.9 90 63.3
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 4.9e-26 120.9 90 63.3
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 4.9e-26 120.9 90 63.3
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 6.4e-26 120.6 90 62.2
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 6.4e-26 120.6 90 64.4
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 6.4e-26 120.6 92 63.0
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 8.3e-26 120.2 91 62.6
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 8.3e-26 120.2 87 64.4
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 1.1e-25 119.8 88 64.8
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 1.1e-25 119.8 90 61.1
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.1e-25 119.8 90 63.3
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 1.4e-25 119.4 91 62.6
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 1.4e-25 119.4 91 62.6
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.4e-25 119.4 87 60.9
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.4e-25 119.4 90 63.3
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 2.4e-25 118.6 87 64.4
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 3.2e-25 118.2 89 61.8
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 4.1e-25 117.9 90 61.1
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.1e-25 117.9 88 63.6
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.1e-25 117.9 88 63.6
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.1e-25 117.9 88 63.6
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 5.4e-25 117.5 90 60.0
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 5.4e-25 117.5 89 60.7
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.4e-25 117.5 90 62.2
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 9.2e-25 116.7 82 64.6
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 1.6e-24 115.9 87 62.1
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.1e-24 115.5 85 64.7
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.7e-24 115.2 87 63.2
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.0e-23 113.2 88 61.4
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 1.0e-23 113.2 88 61.4
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 2.3e-23 112.1 88 61.4
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 2.3e-23 112.1 88 61.4
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 5.1e-23 110.9 88 59.1
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 6.6e-23 110.5 87 60.9
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.3e-22 108.2 90 58.9
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 2.6e-19 98.6 88 55.7
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 2.9e-18 95.1 65 64.6
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.8e-18 94.7 63 68.3
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 6.4e-18 94.0 79 57.0
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 1.4e-17 92.8 85 51.8
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 1.2e-16 89.7 60 68.3
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 8.7e-15 83.6 88 46.6
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 3.3e-14 81.6 68 52.9
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 9.6e-14 80.1 52 67.3
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.2e-13 79.7 57 61.4
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.2e-13 79.7 78 52.6
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.9e-10 68.6 45 66.7
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 4.9e-10 67.8 58 55.2
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 8.4e-10 67.0 85 37.6
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 2.4e-09 65.5 57 54.4
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 5.4e-09 64.3 49 59.2
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 1.6e-08 62.8 82 39.0
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 1.6e-08 62.8 44 59.1
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 7.8e-08 60.5 79 41.8
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 7.8e-08 60.5 79 41.8
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.1e-06 56.6 81 39.5
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 1.5e-06 56.2 71 40.8
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 1.5e-06 56.2 71 40.8
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 3.3e-06 55.1 43 55.8
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 3.3e-06 55.1 43 55.8


User provided reference genes

Program Settings