Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 1.3e-47 192.6 90 100.0
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 1.7e-47 192.2 90 98.9
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 4.6e-40 167.5 88 87.5
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 5.0e-39 164.1 90 80.0
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 5.0e-39 164.1 90 82.2
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 6.6e-39 163.7 90 81.1
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 1.5e-38 162.5 90 77.8
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.5e-38 162.5 90 80.0
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.5e-38 162.5 90 81.1
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 1.9e-38 162.2 90 81.1
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.5e-38 161.8 92 82.6
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 4.3e-38 161.0 90 80.0
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 7.3e-38 160.2 90 76.7
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 9.5e-38 159.8 90 82.2
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 2.1e-37 158.7 90 80.0
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 2.1e-37 158.7 90 78.9
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.1e-37 158.7 90 75.6
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 2.8e-37 158.3 92 80.4
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 2.8e-37 158.3 90 77.8
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 3.6e-37 157.9 90 77.8
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 3.6e-37 157.9 90 75.6
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 4.7e-37 157.5 88 80.7
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 4.7e-37 157.5 88 79.5
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 6.2e-37 157.1 88 79.5
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 6.2e-37 157.1 89 79.8
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 8.0e-37 156.8 90 76.7
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 8.0e-37 156.8 90 80.0
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.1e-36 156.4 90 80.0
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.4e-36 156.0 90 76.7
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.3e-36 155.2 89 78.7
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 3.1e-36 154.8 90 76.7
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 5.2e-36 154.1 90 77.8
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 5.2e-36 154.1 88 79.5
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 1.2e-35 152.9 88 77.3
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.0e-35 152.1 90 72.2
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 2.6e-35 151.8 90 75.6
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.6e-35 151.8 90 72.2
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 2.6e-35 151.8 87 77.0
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.4e-35 151.0 90 73.3
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.4e-35 151.0 90 72.2
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 4.4e-35 151.0 90 73.3
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.8e-35 150.6 90 74.4
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.8e-35 150.6 90 73.3
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 1.3e-34 149.4 88 73.9
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.7e-34 149.1 90 75.6
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.9e-33 145.6 90 73.3
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 1.9e-33 145.6 87 70.1
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.9e-33 145.6 88 75.0
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 2.4e-33 145.2 90 73.3
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 3.2e-33 144.8 87 73.6
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 3.2e-33 144.8 87 73.6
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 3.2e-33 144.8 88 73.9
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 3.2e-33 144.8 89 68.5
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 3.2e-33 144.8 90 73.3
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 3.2e-33 144.8 90 73.3
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.2e-33 144.8 90 74.4
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.2e-33 144.8 90 74.4
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.1e-33 144.4 89 74.2
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.1e-33 144.4 90 72.2
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 5.4e-33 144.1 90 74.4
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 7.0e-33 143.7 87 70.1
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 7.0e-33 143.7 90 73.3
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.2e-32 142.9 90 71.1
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.6e-32 142.5 91 74.7
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.5e-32 141.4 90 72.2
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 6.0e-32 140.6 88 72.7
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 6.0e-32 140.6 90 65.6
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 7.8e-32 140.2 90 70.0
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.0e-31 139.8 91 72.5
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 1.3e-31 139.4 92 70.7
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 1.7e-31 139.0 87 71.3
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.7e-31 139.0 87 69.0
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 5.1e-31 137.5 90 67.8
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 6.6e-31 137.1 90 67.8
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 6.6e-31 137.1 90 67.8
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 6.6e-31 137.1 90 67.8
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 6.6e-31 137.1 90 67.8
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 6.6e-31 137.1 90 67.8
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 6.6e-31 137.1 87 70.1
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.5e-30 136.0 87 66.7
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.5e-30 136.0 90 70.0
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.5e-30 136.0 87 70.1
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 2.5e-30 135.2 90 67.8
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 3.3e-30 134.8 90 67.8
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 3.3e-30 134.8 87 67.8
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 4.3e-30 134.4 88 69.3
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 4.3e-30 134.4 88 71.6
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.3e-30 134.4 90 70.0
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 5.6e-30 134.0 90 67.8
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 7.3e-30 133.7 90 67.8
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 9.5e-30 133.3 88 68.2
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 9.5e-30 133.3 87 69.0
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-29 132.9 90 67.8
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-29 132.9 90 67.8
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 1.2e-29 132.9 90 67.8
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 1.2e-29 132.9 90 67.8
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 2.8e-29 131.7 90 65.6
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 3.6e-29 131.3 90 64.4
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 8.1e-29 130.2 91 63.7
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 8.1e-29 130.2 91 63.7
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.8e-28 129.0 90 64.4
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 3.1e-28 128.3 82 67.1
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 4.0e-28 127.9 89 62.9
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 1.2e-27 126.3 88 67.0
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 1.2e-27 126.3 89 62.9
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 1.5e-27 125.9 87 65.5
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 2.0e-27 125.6 88 63.6
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 2.6e-27 125.2 88 62.5
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 2.6e-27 125.2 88 62.5
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.8e-27 124.0 88 62.5
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.8e-27 124.0 88 62.5
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.8e-27 124.0 88 62.5
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 7.5e-27 123.6 85 64.7
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 9.9e-27 123.2 90 64.4
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.3e-26 122.9 87 63.2
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 1.3e-26 122.9 88 65.9
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.2e-26 122.1 88 61.4
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 6.6e-23 110.5 65 72.3
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.3e-22 108.2 61 77.0
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 1.6e-21 105.9 90 56.7
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 4.0e-20 101.3 88 55.7
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 9.9e-19 96.7 75 60.0
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 1.7e-18 95.9 85 51.8
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 7.1e-17 90.5 90 51.1
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.6e-16 89.4 59 64.4
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.0e-15 86.7 57 64.9
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.3e-15 86.3 52 67.3
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.7e-15 85.9 78 55.1
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 1.5e-14 82.8 85 43.5
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 9.6e-14 80.1 58 60.3
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 6.2e-13 77.4 82 45.1
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 6.2e-13 77.4 57 59.6
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 9.0e-12 73.6 45 71.1
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 1.5e-11 72.8 56 58.9
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 7.6e-11 70.5 79 44.3
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 7.6e-11 70.5 79 44.3
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 8.4e-10 67.0 44 61.4
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 2.4e-09 65.5 81 43.2
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 3.2e-09 65.1 71 43.7
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 3.2e-09 65.1 71 43.7
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 4.6e-08 61.2 43 60.5
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 4.6e-08 61.2 43 60.5
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.0e-07 60.1 82 31.7
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 1.3e-07 59.7 80 37.5
AagrBONN_evm.TU.Sc2ySwM_344.1844 Anthoceros agrestis HOM05D053501 ORTHO05D005536 1.7e-07 59.3 74 37.8
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 5.1e-07 57.8 70 40.0
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 6.6e-07 57.4 88 33.0


User provided reference genes

Program Settings