Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p013235 Quercus lobata HOM05D000022 ORTHO05D000306 4.8e-45 184.1 92 100.0
QL11p013342 Quercus lobata HOM05D000022 ORTHO05D000306 1.1e-28 129.8 92 76.1
QL11p013263 Quercus lobata HOM05D000022 ORTHO05D000306 1.8e-28 129.0 92 76.1
QL11p013298 Quercus lobata HOM05D000022 ORTHO05D000306 1.8e-28 129.0 92 76.1
QL11p013316 Quercus lobata HOM05D000022 ORTHO05D000306 5.3e-28 127.5 92 75.0
QL11p013213 Quercus lobata HOM05D000022 ORTHO05D000306 2.0e-27 125.6 92 72.8
CiPaw.09G074200 Carya illinoinensis HOM05D000022 ORTHO05D000306 2.7e-27 125.2 91 70.3
QL11p013257 Quercus lobata HOM05D000022 ORTHO05D000306 2.7e-27 125.2 92 71.7
QL11p013185 Quercus lobata HOM05D000022 ORTHO05D000306 3.5e-27 124.8 92 72.8
Cfa000672 Carpinus fangiana HOM05D000022 ORTHO05D000306 1.0e-26 123.2 86 72.1
Cfa000645 Carpinus fangiana HOM05D000022 ORTHO05D000306 3.8e-26 121.3 86 72.1
Haze_06144 Corylus avellana HOM05D000022 ORTHO05D000306 4.2e-25 117.9 86 68.6
QL11p013254 Quercus lobata HOM05D000022 ORTHO05D000306 4.2e-25 117.9 93 68.8
Cfa000669 Carpinus fangiana HOM05D000022 ORTHO05D000306 5.5e-25 117.5 86 68.6
QL11p013196 Quercus lobata HOM05D000022 ORTHO05D000306 1.2e-24 116.3 92 68.5
Cfa000673 Carpinus fangiana HOM05D000022 ORTHO05D000306 5.2e-23 110.9 86 64.0
CiPaw.09G074400 Carya illinoinensis HOM05D000022 ORTHO05D000306 2.0e-22 109.0 93 64.5
Haze_06143 Corylus avellana HOM05D000022 ORTHO05D000306 4.4e-22 107.8 86 65.1
Dinv10914 Davidia involucrata HOM05D000022 ORTHO05D000306 1.3e-21 106.3 92 57.6
Dinv39681 Davidia involucrata HOM05D000022 ORTHO05D000306 1.3e-21 106.3 92 57.6
Dinv10912 Davidia involucrata HOM05D000022 ORTHO05D000306 3.7e-21 104.8 92 57.6
Dinv10917 Davidia involucrata HOM05D000022 ORTHO05D000306 6.3e-21 104.0 92 56.5
CiPaw.09G074300 Carya illinoinensis HOM05D000022 ORTHO05D000306 1.8e-20 102.4 96 59.4
Hma1.2p1_0613F.1_g189320 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 5.4e-20 100.9 92 54.3
Cfa000671 Carpinus fangiana HOM05D000022 ORTHO05D000306 9.1e-20 100.1 88 61.4
Haze_06147 Corylus avellana HOM05D000022 ORTHO05D000306 7.7e-19 97.1 88 61.4
Thecc.06G111000 Theobroma cacao HOM05D000022 ORTHO05D000306 1.3e-18 96.3 92 55.4
Duzib160G0538 Durio zibethinus HOM05D000022 ORTHO05D000306 6.5e-18 94.0 92 53.3
EL10Ac7g16587 Beta vulgaris HOM05D000022 ORTHO05D000306 1.1e-17 93.2 92 55.4
Hma1.2p1_0613F.1_g189270 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 1.1e-17 93.2 92 53.3
Gohir.A10G059850 Gossypium hirsutum HOM05D000022 ORTHO05D000306 3.2e-17 91.7 92 53.3
CSS0049803 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 4.2e-17 91.3 92 52.2
Gohir.D10G061200 Gossypium hirsutum HOM05D000022 ORTHO05D000306 5.5e-17 90.9 92 52.2
Gorai.011G065500 Gossypium raimondii HOM05D000022 ORTHO05D000306 5.5e-17 90.9 92 52.2
Phvul.005G112800 Phaseolus vulgaris HOM05D000022 ORTHO05D000306 5.5e-17 90.9 94 55.3
vmacro15380 Vaccinium macrocarpon HOM05D000022 ORTHO05D000306 5.5e-17 90.9 92 51.1
Glyma.13G305800 Glycine max HOM05D000022 ORTHO05D000306 7.2e-17 90.5 96 57.3
Potri.017G040450 Populus trichocarpa HOM05D000022 ORTHO05D000306 9.5e-17 90.1 92 52.2
Glyma.13G305900 Glycine max HOM05D000022 ORTHO05D000306 1.2e-16 89.7 96 55.2
Ciclev10017568m.g Citrus clementina HOM05D000022 ORTHO05D000306 1.6e-16 89.4 91 53.8
Duzib235G1002 Durio zibethinus HOM05D000022 ORTHO05D000306 1.6e-16 89.4 92 52.2
VMungo1080G0766 Vigna mungo HOM05D000022 ORTHO05D000306 1.6e-16 89.4 94 54.3
CSS0036100 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 2.1e-16 89.0 92 52.2
Duzib160G0566 Durio zibethinus HOM05D000022 ORTHO05D000306 2.1e-16 89.0 92 52.2
COL.COLO4_30654 Corchorus olitorius HOM05D000022 ORTHO05D000306 2.8e-16 88.6 92 48.9
Gohir.A10G060100 Gossypium hirsutum HOM05D000022 ORTHO05D000306 2.8e-16 88.6 92 53.3
Sabra17G0026800 Salix brachista HOM05D000022 ORTHO05D000306 3.6e-16 88.2 92 51.1
Gohir.D10G061700 Gossypium hirsutum HOM05D000022 ORTHO05D000306 4.7e-16 87.8 84 56.0
HanXRQChr03g0071851 Helianthus annuus HOM05D000022 ORTHO05D000306 4.7e-16 87.8 86 47.7
Potri.007G120500 Populus trichocarpa HOM05D000022 ORTHO05D000306 4.7e-16 87.8 92 52.2
Potri.007G120700 Populus trichocarpa HOM05D000022 ORTHO05D000306 4.7e-16 87.8 92 52.2
TAR626G1547 Trochodendron aralioides HOM05D000022 ORTHO05D000306 4.7e-16 87.8 81 53.1
Gohir.D10G061600 Gossypium hirsutum HOM05D000022 ORTHO05D000306 6.1e-16 87.4 84 56.0
Gorai.011G065800 Gossypium raimondii HOM05D000022 ORTHO05D000306 6.1e-16 87.4 84 56.0
Gohir.A10G060600 Gossypium hirsutum HOM05D000022 ORTHO05D000306 1.0e-15 86.7 84 56.0
Hma1.2p1_0613F.1_g189300 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 1.0e-15 86.7 92 51.1
Potri.017G039966 Populus trichocarpa HOM05D000022 ORTHO05D000306 1.0e-15 86.7 92 51.1
TWI36G0750 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 1.0e-15 86.7 92 50.0
Lalb_Chr22g0349621 Lupinus albus HOM05D000022 ORTHO05D000306 1.4e-15 86.3 96 53.1
Medtr2g088980 Medicago truncatula HOM05D000022 ORTHO05D000306 1.4e-15 86.3 93 51.6
Psat5g266320 Pisum sativum HOM05D000022 ORTHO05D000306 1.4e-15 86.3 96 52.1
Rhsim07G0192500 Rhododendron simsii HOM05D000022 ORTHO05D000306 1.4e-15 86.3 92 52.2
CSS0006303 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 1.8e-15 85.9 87 52.9
CSS0009853 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 1.8e-15 85.9 87 52.9
Sabra17G0027400 Salix brachista HOM05D000022 ORTHO05D000306 3.0e-15 85.1 92 51.1
PGR042G2884 Punica granatum HOM05D000022 ORTHO05D000306 4.0e-15 84.7 91 50.5
Atru.chr2.1055 Acer truncatum HOM05D000022 ORTHO05D000306 5.2e-15 84.3 92 48.9
Actinidia12494 Actinidia chinensis HOM05D000022 ORTHO05D000306 6.8e-15 84.0 95 51.6
RhsimUnG0184500 Rhododendron simsii HOM05D000022 ORTHO05D000306 8.8e-15 83.6 92 51.1
CSS0024431 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 1.2e-14 83.2 87 50.6
Sabra07G0097800 Salix brachista HOM05D000022 ORTHO05D000306 1.5e-14 82.8 92 48.9
TPR.G4228 Trifolium pratense HOM05D000022 ORTHO05D000306 2.0e-14 82.4 86 51.2
Manes.12G077801 Manihot esculenta HOM05D000022 ORTHO05D000306 2.6e-14 82.0 96 53.1
Medtr2g088930 Medicago truncatula HOM05D000022 ORTHO05D000306 2.6e-14 82.0 96 49.0
Gorai.011G065900 Gossypium raimondii HOM05D000022 ORTHO05D000306 3.4e-14 81.6 84 53.6
Rhsim06G0155200 Rhododendron simsii HOM05D000022 ORTHO05D000306 3.4e-14 81.6 93 50.5
Rhsim06G0155300 Rhododendron simsii HOM05D000022 ORTHO05D000306 3.4e-14 81.6 93 50.5
GSVIVG01030637001 Vitis vinifera HOM05D000022 ORTHO05D000306 3.4e-14 81.6 92 50.0
Manes.13G109300 Manihot esculenta HOM05D000022 ORTHO05D000306 1.3e-13 79.7 93 48.4
Manes.13G110600 Manihot esculenta HOM05D000022 ORTHO05D000306 2.8e-13 78.6 93 46.2
Haze_19045 Corylus avellana HOM05D000022 ORTHO05D000306 3.7e-13 78.2 92 50.0
Potri.017G040049 Populus trichocarpa HOM05D000022 ORTHO05D000306 3.7e-13 78.2 93 46.2
Lj3g0006515 Lotus japonicus HOM05D000022 ORTHO05D000306 4.9e-13 77.8 86 54.7
Haze_06149 Corylus avellana HOM05D000022 ORTHO05D000306 6.3e-13 77.4 53 66.0
Eucgr.A01730 Eucalyptus grandis HOM05D000022 ORTHO05D000306 6.3e-13 77.4 92 46.7
PGSC0003DMG400013176 Solanum tuberosum HOM05D000022 ORTHO05D000306 1.1e-12 76.6 92 46.7
Haze_12906 Corylus avellana HOM05D000022 ORTHO05D000071 1.4e-12 76.3 95 47.4
TPR.G4173 Trifolium pratense HOM05D000022 ORTHO05D000306 1.8e-12 75.9 98 46.9
Migut.H01217 Erythranthe guttata HOM05D000022 ORTHO05D000306 3.1e-12 75.1 77 50.6
Migut.H01216 Erythranthe guttata HOM05D000022 ORTHO05D000306 4.1e-12 74.7 77 50.6
Cfa010202 Carpinus fangiana HOM05D000022 ORTHO05D000306 5.4e-12 74.3 92 47.8
ECA238G2716 Erigeron canadensis HOM05D000022 ORTHO05D000306 7.0e-12 73.9 71 45.1
Solyc12g005720.1 Solanum lycopersicum HOM05D000022 ORTHO05D000306 7.0e-12 73.9 92 46.7
Sopen12g001650 Solanum pennellii HOM05D000022 ORTHO05D000306 7.0e-12 73.9 92 46.7
ECA240G3651 Erigeron canadensis HOM05D000022 ORTHO05D000306 9.2e-12 73.6 71 46.5
Lj3g0027641 Lotus japonicus HOM05D000022 ORTHO05D000306 1.2e-11 73.2 85 54.1
Potri.017G040300 Populus trichocarpa HOM05D000022 ORTHO05D000306 1.2e-11 73.2 93 44.1
QL01p037749 Quercus lobata HOM05D000022 ORTHO05D000306 2.0e-11 72.4 84 47.6
TWI18G0890 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 2.0e-11 72.4 94 40.4
Migut.H01215 Erythranthe guttata HOM05D000022 ORTHO05D000306 2.7e-11 72.0 77 48.1
Eucgr.A01726 Eucalyptus grandis HOM05D000022 ORTHO05D000306 2.7e-11 72.0 89 46.1
Lsat_1_v5_gn_9_118880 Lactuca sativa HOM05D000022 ORTHO05D000306 2.7e-11 72.0 92 39.1
Lsat_1_v5_gn_9_119440 Lactuca sativa HOM05D000022 ORTHO05D000306 2.7e-11 72.0 92 39.1
Lj8P122T37 Lonicera japonica HOM05D000022 ORTHO05D000306 2.7e-11 72.0 74 48.6
CAN.G80.12 Capsicum annuum HOM05D000022 ORTHO05D000306 3.5e-11 71.6 92 44.6
Sabra17G0027300 Salix brachista HOM05D000022 ORTHO05D000306 3.5e-11 71.6 93 44.1
Lsat_1_v5_gn_9_118840 Lactuca sativa HOM05D000022 ORTHO05D000306 4.5e-11 71.2 92 39.1
Nn1g03704 Nelumbo nucifera HOM05D000022 ORTHO05D000306 4.5e-11 71.2 92 45.7
QL04p084449 Quercus lobata HOM05D000022 ORTHO05D000306 7.8e-11 70.5 92 47.8
QL04p084467 Quercus lobata HOM05D000022 ORTHO05D000306 1.3e-10 69.7 92 47.8
QL04p084349 Quercus lobata HOM05D000022 ORTHO05D000306 1.7e-10 69.3 92 45.7
QL04p084471 Quercus lobata HOM05D000022 ORTHO05D000306 1.7e-10 69.3 92 47.8
QL04p084474 Quercus lobata HOM05D000022 ORTHO05D000306 1.7e-10 69.3 92 47.8
QL04p084402 Quercus lobata HOM05D000022 ORTHO05D000306 2.3e-10 68.9 92 46.7
Ciclev10018332m.g Citrus clementina HOM05D000022 ORTHO05D000306 2.9e-10 68.6 81 49.4
Gorai.011G065600 Gossypium raimondii HOM05D000022 ORTHO05D000306 5.0e-10 67.8 92 44.6
Lj3P202T32 Lonicera japonica HOM05D000022 ORTHO05D000306 5.0e-10 67.8 74 45.9
MBI18_g25929_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000306 6.6e-10 67.4 84 45.2
Eucgr.A01732 Eucalyptus grandis HOM05D000022 ORTHO05D000306 8.6e-10 67.0 83 44.6
Gohir.D10G061400 Gossypium hirsutum HOM05D000022 ORTHO05D000306 1.1e-09 66.6 92 43.5
CAN.G80.11 Capsicum annuum HOM05D000022 ORTHO05D000306 1.5e-09 66.2 71 45.1
Cfa010201 Carpinus fangiana HOM05D000022 ORTHO05D000306 5.6e-09 64.3 68 48.5
MBI18_g44488_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000306 7.3e-09 63.9 84 42.9
Sabra17G0027100 Salix brachista HOM05D000022 ORTHO05D000306 9.5e-09 63.5 95 40.0
Sc21g0001720 Simmondsia chinensis HOM05D000022 ORTHO05D000306 9.5e-09 63.5 90 42.2
ClCG02G001720 Citrullus lanatus HOM05D000022 ORTHO05D000306 1.2e-08 63.2 67 52.2
TWI18G0812 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 1.6e-08 62.8 83 43.4
THA.LOC104808499 Tarenaya hassleriana HOM05D000022 ORTHO05D000306 2.1e-08 62.4 93 38.7
RcHm_v2.0_Chr1g0328011 Rosa chinensis HOM05D000022 ORTHO05D000306 2.8e-08 62.0 80 41.2
RcHm_v2.0_Chr2g0158681 Rosa chinensis HOM05D000022 ORTHO05D000306 2.8e-08 62.0 80 42.5
TWI18G0128 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 6.1e-08 60.8 83 42.2
RcHm_v2.0_Chr3g0494521 Rosa chinensis HOM05D000022 ORTHO05D000306 1.4e-07 59.7 97 39.2
Haze_06719 Corylus avellana HOM05D000022 ORTHO05D000071 1.8e-07 59.3 79 43.0
Sabra07G0097700 Salix brachista HOM05D000022 ORTHO05D000306 2.3e-07 58.9 94 37.2
Lalb_Chr03g0028921 Lupinus albus HOM05D000022 ORTHO05D000306 3.0e-07 58.5 92 41.3
Gohir.A10G060301 Gossypium hirsutum HOM05D000022 ORTHO05D000306 5.2e-07 57.8 73 47.9
Phvul.005G112700 Phaseolus vulgaris HOM05D000022 ORTHO05D000306 5.2e-07 57.8 67 46.3
Potri.007G120300 Populus trichocarpa HOM05D000022 ORTHO05D000306 5.2e-07 57.8 94 36.2
FAN25G1822 Fragaria x ananassa HOM05D000022 ORTHO05D000071 6.8e-07 57.4 73 43.8
Potri.017G040132 Populus trichocarpa HOM05D000022 ORTHO05D000306 6.8e-07 57.4 85 41.2
PGR042G2931 Punica granatum HOM05D000022 ORTHO05D000071 6.8e-07 57.4 88 36.4
CSS0011624 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 8.9e-07 57.0 84 40.5
Eucgr.E03745 Eucalyptus grandis HOM05D000022 ORTHO05D000071 8.9e-07 57.0 91 37.4
Lalb_Chr03g0028931 Lupinus albus HOM05D000022 ORTHO05D000306 1.2e-06 56.6 92 40.2
Thecc.06G210200 Theobroma cacao HOM05D000022 ORTHO05D000071 1.2e-06 56.6 92 41.3
Thecc.06G210500 Theobroma cacao HOM05D000022 ORTHO05D000071 1.5e-06 56.2 92 41.3
MELO3C018797.2 Cucumis melo HOM05D000022 ORTHO05D000306 2.0e-06 55.8 101 43.6
QL09p026199 Quercus lobata HOM05D000022 ORTHO05D000071 2.0e-06 55.8 93 39.8
CANSAT56G0221 Cannabis sativa HOM05D000022 ORTHO05D000071 2.6e-06 55.5 88 38.6
CANSAT64G2195 Cannabis sativa HOM05D000022 ORTHO05D000306 2.6e-06 55.5 88 40.9
Eucgr.E03732 Eucalyptus grandis HOM05D000022 ORTHO05D000071 2.6e-06 55.5 83 37.3
Potri.007G120600 Populus trichocarpa HOM05D000022 ORTHO05D000306 2.6e-06 55.5 94 36.2
Sabra04G0013100 Salix brachista HOM05D000022 ORTHO05D000306 2.6e-06 55.5 93 38.7
Sed0000885 Sechium edule HOM05D000022 ORTHO05D000306 2.6e-06 55.5 100 43.0
VMungo0720G0933 Vigna mungo HOM05D000022 ORTHO05D000306 3.4e-06 55.1 91 41.8
Lalb_Chr19g0135681 Lupinus albus HOM05D000022 ORTHO05D000306 4.4e-06 54.7 85 40.0
Thecc.10G115700 Theobroma cacao HOM05D000022 ORTHO05D000306 4.4e-06 54.7 50 56.0
Dinv17841 Davidia involucrata HOM05D000022 ORTHO05D000306 5.7e-06 54.3 92 38.0
Lj3g0017677 Lotus japonicus HOM05D000022 ORTHO05D000306 5.7e-06 54.3 85 40.0
QL05p075508 Quercus lobata HOM05D000022 ORTHO05D000071 5.7e-06 54.3 65 44.6
MBI18_g26660_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000071 9.8e-06 53.5 91 38.5
PSO063G1000 Papaver somniferum HOM05D000022 ORTHO05D000306 9.8e-06 53.5 87 36.8


User provided reference genes

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