Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 1.3e-47 193.0 116 100.0
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 9.4e-38 160.2 116 73.3
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.6e-37 159.5 116 75.0
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 4.7e-37 157.9 93 84.9
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 8.8e-36 153.7 90 84.4
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.1e-35 153.3 90 84.4
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 2.0e-35 152.5 90 85.6
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.6e-35 152.1 115 69.6
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 2.6e-35 152.1 88 81.8
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 3.3e-35 151.8 116 69.8
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 4.4e-35 151.4 116 68.1
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.4e-35 151.4 116 68.1
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 5.7e-35 151.0 89 84.3
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 5.7e-35 151.0 115 68.7
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 5.7e-35 151.0 115 68.7
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 7.4e-35 150.6 90 80.0
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 7.4e-35 150.6 90 80.0
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 9.7e-35 150.2 116 67.2
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.3e-34 149.8 115 67.8
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.3e-34 149.8 90 80.0
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 2.2e-34 149.1 89 82.0
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 2.8e-34 148.7 92 79.3
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 2.8e-34 148.7 116 69.0
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 2.8e-34 148.7 86 82.6
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 3.7e-34 148.3 116 66.4
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.7e-34 148.3 116 66.4
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 3.7e-34 148.3 113 67.3
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 6.3e-34 147.5 90 82.2
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 6.3e-34 147.5 89 80.9
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 8.2e-34 147.1 116 67.2
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 1.8e-33 146.0 89 82.0
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 2.4e-33 145.6 115 67.0
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.4e-33 145.6 93 78.5
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 2.4e-33 145.6 86 81.4
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 3.1e-33 145.2 116 67.2
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 3.1e-33 145.2 116 67.2
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 3.1e-33 145.2 116 64.7
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 5.3e-33 144.4 87 79.3
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 7.0e-33 144.1 89 78.7
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 2.0e-32 142.5 86 81.4
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 2.0e-32 142.5 86 81.4
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 2.0e-32 142.5 115 66.1
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 2.0e-32 142.5 116 64.7
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 3.5e-32 141.7 90 75.6
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 3.5e-32 141.7 129 62.8
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 4.5e-32 141.4 91 78.0
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 5.9e-32 141.0 90 74.4
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 7.7e-32 140.6 86 80.2
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 7.7e-32 140.6 89 76.4
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.0e-31 140.2 90 75.6
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 1.3e-31 139.8 89 75.3
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 1.3e-31 139.8 87 75.9
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 2.2e-31 139.0 86 79.1
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 3.8e-31 138.3 87 75.9
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 3.8e-31 138.3 89 75.3
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 5.0e-31 137.9 90 74.4
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 6.5e-31 137.5 86 77.9
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 6.5e-31 137.5 86 77.9
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 8.5e-31 137.1 90 73.3
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 8.5e-31 137.1 90 73.3
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.1e-30 136.7 89 74.2
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.9e-30 136.0 116 63.8
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.9e-30 136.0 92 73.9
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.2e-30 135.2 86 74.4
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 3.2e-30 135.2 92 71.7
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 4.2e-30 134.8 92 70.7
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.5e-30 134.4 116 62.1
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 7.2e-30 134.0 86 77.9
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 7.2e-30 134.0 92 71.7
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.2e-29 133.3 89 73.0
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.2e-29 133.3 89 71.9
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.2e-29 133.3 89 74.2
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.2e-29 133.3 114 64.0
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.6e-29 132.9 87 73.6
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.6e-29 132.9 90 75.6
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 2.1e-29 132.5 92 70.7
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 2.1e-29 132.5 87 74.7
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 2.1e-29 132.5 92 68.5
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 2.7e-29 132.1 89 71.9
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 2.7e-29 132.1 103 68.9
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 6.1e-29 131.0 90 74.4
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 6.1e-29 131.0 89 71.9
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 8.0e-29 130.6 107 63.6
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.0e-28 130.2 91 73.6
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.0e-28 130.2 91 73.6
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.4e-28 129.8 92 67.4
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.4e-28 129.8 104 67.3
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.8e-28 129.4 92 68.5
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 3.0e-28 128.6 92 67.4
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 3.0e-28 128.6 92 69.6
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 3.0e-28 128.6 92 69.6
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 3.0e-28 128.6 92 68.5
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.2e-28 127.9 92 67.4
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 5.2e-28 127.9 76 81.6
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 6.7e-28 127.5 85 71.8
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 6.7e-28 127.5 92 68.5
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 6.7e-28 127.5 90 72.2
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 8.8e-28 127.1 92 68.5
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.1e-27 126.7 92 67.4
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.5e-27 126.3 78 79.5
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.5e-27 126.3 84 72.6
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.5e-27 126.3 102 67.6
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 2.0e-27 125.9 92 67.4
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 2.0e-27 125.9 92 67.4
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 2.0e-27 125.9 92 67.4
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 3.3e-27 125.2 86 68.6
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 5.7e-27 124.4 92 66.3
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 7.4e-27 124.0 92 67.4
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 9.7e-27 123.6 86 70.9
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.8e-26 122.1 93 63.4
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 4.8e-26 121.3 89 64.0
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 6.3e-26 120.9 90 67.8
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 3.1e-25 118.6 92 66.3
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 3.1e-25 118.6 92 66.3
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.1e-25 118.6 91 65.9
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 7.0e-25 117.5 93 63.4
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 2.0e-24 115.9 89 67.4
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.6e-24 115.5 87 67.8
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 3.5e-24 115.2 87 66.7
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 4.5e-24 114.8 91 67.0
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 5.9e-24 114.4 90 64.4
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 5.9e-24 114.4 87 66.7
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 1.7e-23 112.8 90 64.4
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 2.2e-23 112.5 91 61.5
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 8.5e-23 110.5 90 61.1
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.1e-22 110.2 92 62.0
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 7.2e-22 107.5 93 61.3
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.0e-20 103.6 87 55.2
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.8e-20 102.8 84 69.0
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 4.0e-20 101.7 90 58.9
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 9.7e-19 97.1 57 82.5
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.2e-18 95.9 61 80.3
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.4e-17 92.4 84 63.1
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 4.1e-17 91.7 69 66.7
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 5.3e-17 91.3 57 77.2
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.6e-16 89.7 83 57.8
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.0e-15 87.0 55 76.4
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.0e-15 87.0 92 52.2
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 2.2e-15 85.9 54 77.8
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.8e-15 85.1 62 71.0
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 5.0e-15 84.7 86 53.5
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.5e-14 82.4 58 63.8
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.8e-12 76.3 71 62.0
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 2.8e-10 68.9 74 55.4
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.1e-09 67.0 53 69.8
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 2.4e-09 65.9 69 50.7
Solyc11g065610.1 Solanum lycopersicum HOM05D005271 ORTHO05D006072 1.1e-06 57.0 37 67.6
Cfa013238 Carpinus fangiana HOM05D005271 ORTHO05D006072 3.3e-06 55.5 33 81.8


User provided reference genes

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