Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 8.8e-190 666.8 332 100.0
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 2.9e-164 582.0 328 86.3
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 3.6e-151 538.5 326 79.8
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 6.2e-151 537.7 331 78.5
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 5.8e-149 531.2 331 76.7
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 7.1e-147 524.2 331 78.9
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 4.6e-146 521.5 330 77.0
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 1.3e-145 520.0 331 76.4
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 3.0e-145 518.8 332 75.0
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.9e-145 518.5 333 76.3
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 8.6e-145 517.3 331 74.6
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 1.1e-144 516.9 334 75.4
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.5e-144 516.5 327 76.8
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.5e-144 515.8 333 75.4
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 5.6e-144 514.6 333 75.1
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 7.3e-144 514.2 333 75.1
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 7.3e-144 514.2 333 75.4
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 1.6e-143 513.1 325 76.3
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.1e-143 512.7 335 74.6
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 6.2e-143 511.1 333 75.4
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.4e-142 510.0 327 75.2
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 4.0e-142 508.4 327 72.5
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 5.2e-142 508.1 331 73.4
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 9.0e-142 507.3 333 74.2
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 9.9e-141 503.8 347 70.6
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 6.4e-140 501.1 331 70.1
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 3.2e-139 498.8 330 73.3
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 9.3e-139 497.3 330 73.3
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 1.2e-138 496.9 299 79.3
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 2.7e-138 495.7 335 71.9
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 6.0e-138 494.6 330 73.3
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 6.0e-138 494.6 330 73.6
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 1.0e-137 493.8 330 73.6
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.3e-137 493.4 365 67.9
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 1.7e-137 493.0 330 73.3
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 1.7e-137 493.0 330 73.3
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 2.3e-137 492.7 330 73.6
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 3.0e-137 492.3 331 70.1
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 3.0e-137 492.3 330 73.3
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 1.5e-136 490.0 330 73.0
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.5e-136 490.0 327 70.6
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 2.5e-136 489.2 330 73.0
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 3.3e-136 488.8 331 73.4
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 5.6e-136 488.0 325 70.5
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 7.3e-136 487.6 330 72.4
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 9.6e-136 487.3 327 70.3
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.3e-135 486.9 330 71.2
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.6e-135 486.5 326 69.6
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.6e-135 486.5 325 71.7
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 2.1e-135 486.1 331 73.1
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.8e-135 485.7 363 67.5
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 3.6e-135 485.3 326 71.5
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 4.8e-135 485.0 330 71.8
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 4.0e-134 481.9 323 70.9
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 6.9e-134 481.1 331 68.6
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 1.2e-133 480.3 330 71.8
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.2e-133 480.3 330 70.6
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 4.5e-133 478.4 331 70.1
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 4.5e-133 478.4 323 70.6
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 1.3e-132 476.9 328 68.9
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 2.2e-132 476.1 330 70.6
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 4.9e-132 474.9 328 74.7
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.1e-131 473.8 334 66.8
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 4.2e-131 471.9 323 70.6
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 5.4e-131 471.5 324 68.5
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 9.3e-131 470.7 334 67.4
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 1.2e-130 470.3 326 69.3
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 1.6e-130 469.9 324 71.3
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 2.1e-130 469.5 328 68.3
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 2.7e-130 469.2 334 65.6
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 3.9e-129 465.3 327 67.3
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 5.1e-129 464.9 353 68.0
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 5.6e-128 461.5 366 61.2
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 7.4e-128 461.1 317 72.2
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 7.4e-128 461.1 325 70.5
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 9.6e-128 460.7 294 74.5
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 8.1e-127 457.6 326 70.6
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 1.4e-126 456.8 333 69.4
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 5.3e-126 454.9 378 60.8
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 9.0e-126 454.1 345 67.2
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 1.3e-124 450.3 328 66.8
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.7e-124 449.9 345 66.7
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.4e-123 446.8 332 66.0
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.4e-123 446.8 328 66.5
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 3.2e-123 445.7 384 60.2
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.2e-122 443.7 331 66.5
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 6.5e-116 421.4 319 65.8
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 1.6e-114 416.8 292 71.2
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.1e-114 416.4 331 63.4
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 2.3e-113 412.9 331 61.3
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 4.3e-112 408.7 326 61.0
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 4.1e-110 402.1 323 62.5
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 5.9e-109 398.3 277 70.8
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.3e-108 397.1 267 69.7
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 3.6e-106 389.0 246 77.6
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 3.0e-105 386.0 236 78.0
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 2.5e-104 382.9 326 60.4
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 2.4e-102 376.3 256 72.7
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 3.1e-102 375.9 265 68.3
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 4.7e-98 362.1 326 58.0
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 3.0e-97 359.4 329 55.9
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 6.7e-97 358.2 295 60.0
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 1.7e-92 343.6 331 54.7
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.0e-89 334.3 185 83.2
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 2.6e-88 329.7 332 52.1
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 1.3e-79 300.8 188 72.3
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 6.5e-76 288.5 216 63.9
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 8.5e-76 288.1 215 64.2
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.1e-75 287.7 331 45.9
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.5e-75 287.3 332 44.9
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 2.3e-73 280.0 325 46.5
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 7.5e-72 275.0 327 44.0
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 8.3e-71 271.6 165 72.7
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 8.3e-63 245.0 324 44.4
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.8e-58 229.9 170 68.2
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 4.9e-55 219.2 167 66.5
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 3.0e-52 209.9 123 73.2
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 1.1e-51 208.0 202 62.4
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.1e-51 208.0 152 63.2
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 1.2e-42 177.9 361 33.8
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 4.0e-41 172.9 166 48.8
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 5.8e-40 169.1 142 61.3
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 1.3e-39 167.9 348 31.6
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 3.6e-34 149.8 315 33.3
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.6e-34 149.8 144 54.9
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.2e-30 136.7 120 60.0
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 7.3e-27 125.6 355 30.7
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 6.0e-21 105.9 76 68.4
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 3.9e-20 103.2 245 29.8
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 2.4e-17 94.0 64 73.4
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 9.0e-17 92.0 59 72.9
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 2.4e-14 84.0 65 67.7
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 4.2e-14 83.2 67 50.7
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 1.1e-11 75.1 64 48.4
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 2.4e-09 67.4 66 48.5
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 2.6e-08 63.9 85 45.9


User provided reference genes

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