Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p009810 Quercus lobata HOM05D005327 ORTHO05D006655 1.2e-52 209.5 104 100.0
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 2.9e-30 135.2 73 84.9
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 9.3e-29 130.2 73 76.7
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 3.9e-27 124.8 73 75.3
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 1.9e-26 122.5 75 73.3
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.9e-26 122.5 73 72.6
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 2.5e-26 122.1 73 76.7
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 2.5e-26 122.1 73 72.6
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 7.4e-26 120.6 73 74.0
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 9.6e-26 120.2 70 74.3
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 9.6e-26 120.2 73 71.2
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 1.3e-25 119.8 73 69.9
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 1.3e-25 119.8 73 75.3
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 1.3e-25 119.8 73 76.7
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 1.6e-25 119.4 73 72.6
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 2.1e-25 119.0 73 71.2
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 2.8e-25 118.6 73 71.2
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 3.7e-25 118.2 73 71.2
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 4.8e-25 117.9 73 74.0
FAN07G1666 Fragaria x ananassa HOM05D005327 ORTHO05D006655 4.8e-25 117.9 73 74.0
FAN22G1263 Fragaria x ananassa HOM05D005327 ORTHO05D006655 4.8e-25 117.9 73 74.0
Gohir.A05G001832 Gossypium hirsutum HOM05D005327 ORTHO05D006655 4.8e-25 117.9 70 71.4
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 4.8e-25 117.9 73 72.6
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 8.2e-25 117.1 70 74.3
BraA05t22640Z Brassica rapa HOM05D005327 ORTHO05D006655 8.2e-25 117.1 70 74.3
Sed0022639 Sechium edule HOM05D005327 ORTHO05D006655 8.2e-25 117.1 73 71.2
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 1.4e-24 116.3 73 69.9
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 1.4e-24 116.3 73 71.2
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 1.8e-24 115.9 70 72.9
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 1.8e-24 115.9 73 71.2
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 1.8e-24 115.9 76 71.1
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 1.8e-24 115.9 73 67.1
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 2.4e-24 115.5 73 69.9
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 3.1e-24 115.2 73 69.9
Sp3g09020 Schrenkiella parvula HOM05D005327 ORTHO05D006655 3.1e-24 115.2 70 74.3
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 4.1e-24 114.8 70 72.9
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 4.1e-24 114.8 69 73.9
MELO3C017398.2 Cucumis melo HOM05D005327 ORTHO05D006655 4.1e-24 114.8 73 69.9
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 5.3e-24 114.4 73 67.1
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 5.3e-24 114.4 73 71.2
Thhalv10020814m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 6.9e-24 114.0 70 71.4
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 6.9e-24 114.0 73 65.8
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 9.0e-24 113.6 70 71.4
Hma1.2p1_0022F.1_g014810 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 1.2e-23 113.2 76 68.4
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 2.0e-23 112.5 73 68.5
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 2.6e-23 112.1 73 71.2
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 4.5e-23 111.3 70 68.6
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 4.5e-23 111.3 73 65.8
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 5.8e-23 110.9 68 72.1
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 1.0e-22 110.2 70 70.0
SalBow6G3212 Salvia bowleyana HOM05D005327 ORTHO05D006655 1.3e-22 109.8 73 69.9
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 1.7e-22 109.4 74 66.2
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 1.7e-22 109.4 73 68.5
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 2.9e-22 108.6 70 68.6
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 5.0e-22 107.8 75 65.3
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 1.9e-21 105.9 73 65.8
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 1.9e-21 105.9 76 65.8
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 3.2e-21 105.1 68 69.1
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 3.2e-21 105.1 73 67.1
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 5.5e-21 104.4 62 71.0
vmacro20791 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 5.5e-21 104.4 62 71.0
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 7.2e-21 104.0 69 65.2
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 7.2e-21 104.0 69 65.2
unitig_77.g31482 Utricularia gibba HOM05D005327 ORTHO05D006655 7.2e-21 104.0 70 67.1
TPR.G2647 Trifolium pratense HOM05D005327 ORTHO05D006655 9.3e-21 103.6 73 63.0
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 1.6e-20 102.8 73 61.6
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 1.6e-20 102.8 73 60.3
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 1.6e-20 102.8 73 63.0
Ah.11g044360 Amaranthus hybridus HOM05D005327 ORTHO05D006655 2.1e-20 102.4 73 60.3
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 2.7e-20 102.1 72 65.3
Phvul.002G303800 Phaseolus vulgaris HOM05D005327 ORTHO05D006655 2.7e-20 102.1 68 66.2
HPP92_000193 Vanilla planifolia HOM05D005327 ORTHO05D006655 2.7e-20 102.1 73 64.4
HPP92_000244 Vanilla planifolia HOM05D005327 ORTHO05D006655 2.7e-20 102.1 73 64.4
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 3.5e-20 101.7 69 65.2
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 6.1e-20 100.9 68 66.2
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.0e-19 100.1 73 60.3
VMungo0251G1981 Vigna mungo HOM05D005327 ORTHO05D006655 1.0e-19 100.1 73 63.0
Zm00001eb071360 Zea mays HOM05D005327 ORTHO05D006655 1.0e-19 100.1 72 62.5
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 1.3e-19 99.8 73 61.6
Nitab4.5_0000053g0140 Nicotiana tabacum HOM05D005327 ORTHO05D006655 1.3e-19 99.8 79 59.5
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 1.3e-19 99.8 79 59.5
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 1.3e-19 99.8 69 58.0
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 8.7e-19 97.1 73 58.9
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 1.1e-18 96.7 69 63.8
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 1.1e-18 96.7 69 63.8
Os04g0608100 Oryza sativa ssp. japonica HOM05D005327 ORTHO05D006655 1.9e-18 95.9 69 62.3
Pp3c23_15130 Physcomitrium patens HOM05D005327 ORTHO05D006655 7.4e-18 94.0 69 58.0
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 1.3e-17 93.2 98 49.0
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 2.8e-17 92.0 59 69.5
Oeu011821.1 Olea europaea HOM05D005327 ORTHO05D006655 2.8e-17 92.0 56 75.0
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 3.7e-17 91.7 52 78.8
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 3.7e-17 91.7 62 62.9
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 1.8e-16 89.4 52 76.9
Mapoly0128s0021 Marchantia polymorpha HOM05D005327 ORTHO05D006655 5.3e-16 87.8 70 55.7
unitig_749.g14193 Utricularia gibba HOM05D005327 ORTHO05D006655 5.3e-16 87.8 69 62.3
COL.COLO4_23452 Corchorus olitorius HOM05D005327 ORTHO05D006655 1.2e-15 86.7 52 71.2
Sabra18G0112000 Salix brachista HOM05D005327 ORTHO05D006655 1.5e-15 86.3 63 61.9
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 2.6e-15 85.5 56 66.1
SMO356G0298 Selaginella moellendorffii HOM05D005327 ORTHO05D006655 5.0e-14 81.3 78 50.0
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 1.1e-13 80.1 42 83.3
SHI03098 Sapria himalayana HOM05D005327 ORTHO05D006655 5.5e-13 77.8 47 68.1
CBR_g4778 Chara braunii HOM05D005327 ORTHO05D000002 1.8e-11 72.8 55 56.4
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 5.1e-11 71.2 50 62.0
MCO11G047 Micromonas commoda HOM05D005327 ORTHO05D006655 1.2e-07 60.1 42 52.4
arahy.Tifrunner.gnm1.ann1.TSV22Z Arachis hypogaea HOM05D026511 ORTHO05D038857 2.2e-06 55.8 45 60.0


User provided reference genes

Program Settings