Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 3.0e-31 138.3 92 100.0
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 1.0e-15 86.7 83 62.7
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 8.8e-15 83.6 86 60.5
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.2e-14 83.2 78 60.3
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.0e-14 82.4 83 57.8
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 2.0e-14 82.4 88 51.1
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.0e-14 82.4 90 55.6
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 3.4e-14 81.6 83 66.3
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 3.4e-14 81.6 88 60.2
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 4.4e-14 81.3 85 54.1
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 5.7e-14 80.9 83 57.8
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 5.7e-14 80.9 83 57.8
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 5.7e-14 80.9 95 64.2
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 7.5e-14 80.5 87 55.2
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 9.8e-14 80.1 85 54.1
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 9.8e-14 80.1 88 67.0
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 1.3e-13 79.7 96 63.5
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 1.7e-13 79.3 87 59.8
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 1.7e-13 79.3 87 59.8
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.7e-13 79.3 78 66.7
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 2.8e-13 78.6 78 62.8
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 2.8e-13 78.6 76 73.7
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 3.7e-13 78.2 88 53.4
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 4.9e-13 77.8 73 78.1
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 6.3e-13 77.4 79 55.7
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 6.3e-13 77.4 90 54.4
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 6.3e-13 77.4 88 61.4
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 6.3e-13 77.4 85 71.8
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 8.3e-13 77.0 80 57.5
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.1e-12 76.6 87 51.7
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.1e-12 76.6 78 75.6
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.4e-12 76.3 80 72.5
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 1.4e-12 76.3 74 59.5
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 1.4e-12 76.3 81 56.8
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 1.8e-12 75.9 78 56.4
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.4e-12 75.5 78 73.1
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 3.1e-12 75.1 78 56.4
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 3.1e-12 75.1 88 55.7
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 4.1e-12 74.7 73 72.6
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.4e-12 74.3 73 78.1
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 5.4e-12 74.3 79 55.7
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 7.0e-12 73.9 73 58.9
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.0e-12 73.9 78 71.8
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 7.0e-12 73.9 78 71.8
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.0e-12 73.9 73 74.0
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 7.0e-12 73.9 78 52.6
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 7.0e-12 73.9 74 59.5
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 9.2e-12 73.6 77 57.1
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 9.2e-12 73.6 83 62.7
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 9.2e-12 73.6 83 62.7
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 9.2e-12 73.6 78 66.7
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 9.2e-12 73.6 74 59.5
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 9.2e-12 73.6 94 52.1
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 9.2e-12 73.6 78 64.1
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.2e-11 73.2 83 53.0
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.2e-11 73.2 74 59.5
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.2e-11 73.2 73 60.3
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.6e-11 72.8 73 67.1
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.6e-11 72.8 73 76.7
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.6e-11 72.8 73 69.9
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 2.7e-11 72.0 78 64.1
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 2.7e-11 72.0 90 45.6
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.7e-11 72.0 78 56.4
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.5e-11 71.6 78 52.6
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.5e-11 71.6 74 58.1
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.5e-11 71.2 78 69.2
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 4.5e-11 71.2 78 69.2
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 4.5e-11 71.2 73 69.9
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 4.5e-11 71.2 75 56.0
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 4.5e-11 71.2 73 69.9
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 5.9e-11 70.9 87 51.7
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 5.9e-11 70.9 73 67.1
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.9e-11 70.9 87 51.7
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.8e-11 70.5 73 68.5
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.8e-11 70.5 73 71.2
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.0e-10 70.1 86 67.4
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 1.0e-10 70.1 87 54.0
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.3e-10 69.7 80 56.2
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.3e-10 69.7 73 56.2
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 1.3e-10 69.7 78 56.4
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 1.3e-10 69.7 78 56.4
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.3e-10 69.7 78 61.5
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.3e-10 69.7 97 49.5
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 2.3e-10 68.9 85 50.6
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 2.3e-10 68.9 80 51.2
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.3e-10 68.9 73 72.6
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 2.9e-10 68.6 81 51.9
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 2.9e-10 68.6 87 67.8
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 3.8e-10 68.2 79 53.2
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 3.8e-10 68.2 86 46.5
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 3.8e-10 68.2 83 54.2
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 5.0e-10 67.8 80 52.5
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 5.0e-10 67.8 80 61.2
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 5.0e-10 67.8 72 72.2
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 5.0e-10 67.8 83 50.6
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 6.6e-10 67.4 78 52.6
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 8.6e-10 67.0 81 59.3
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 8.6e-10 67.0 81 59.3
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 8.6e-10 67.0 78 52.6
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 1.9e-09 65.9 90 48.9
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 2.5e-09 65.5 73 52.1
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 3.3e-09 65.1 78 50.0
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 3.3e-09 65.1 74 52.7
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 3.3e-09 65.1 78 51.3
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.3e-09 64.7 83 48.2
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 4.3e-09 64.7 87 47.1
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 7.3e-09 63.9 89 42.7
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 1.2e-08 63.2 79 49.4
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.6e-08 62.8 73 52.1
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.6e-08 62.8 74 51.4
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.6e-08 62.8 71 49.3
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.1e-08 62.4 90 44.4
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.1e-08 62.4 73 67.1
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 2.1e-08 62.4 86 47.7
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 2.1e-08 62.4 76 64.5
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 2.8e-08 62.0 100 58.0
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.8e-08 62.0 79 64.6
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 3.6e-08 61.6 76 44.7
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 3.6e-08 61.6 74 54.1
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.0e-07 60.1 88 65.9
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 1.4e-07 59.7 87 56.3
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 3.0e-07 58.5 43 69.8
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 5.2e-07 57.8 79 46.8
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 6.8e-07 57.4 47 66.0
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 8.9e-07 57.0 79 46.8
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 8.9e-07 57.0 87 63.2
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 1.5e-06 56.2 78 46.2
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 2.0e-06 55.8 74 48.6
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 2.6e-06 55.5 74 48.6
Duzib205G0505 Durio zibethinus HOM05D003381 ORTHO05D003880 2.6e-06 55.5 87 60.9
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 2.6e-06 55.5 47 63.8
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.6e-06 55.5 74 45.9
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 3.4e-06 55.1 76 47.4
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 4.4e-06 54.7 85 52.9
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.4e-06 54.7 79 46.8
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 5.7e-06 54.3 85 43.5
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 5.7e-06 54.3 85 43.5
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 5.7e-06 54.3 74 45.9
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 7.5e-06 53.9 74 44.6
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 7.5e-06 53.9 74 45.9
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 9.8e-06 53.5 74 44.6
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 9.8e-06 53.5 74 44.6
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 9.8e-06 53.5 47 61.7


User provided reference genes

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