Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 3.4e-261 904.4 449 100.0
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 6.8e-177 624.4 453 70.9
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 3.2e-174 615.5 480 66.9
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 1.4e-166 590.1 452 68.1
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 3.2e-166 589.0 454 66.3
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.2e-165 587.0 448 67.2
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 2.1e-165 586.3 452 67.5
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 3.9e-164 582.0 450 67.1
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 2.5e-163 579.3 450 66.9
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 1.2e-162 577.0 448 65.0
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.2e-162 577.0 448 66.5
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 4.7e-162 575.1 450 64.9
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 1.1e-161 573.9 452 65.0
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.2e-160 570.5 450 67.1
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.7e-159 566.6 448 63.4
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 2.2e-159 566.2 448 66.1
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 1.9e-158 563.1 448 64.5
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 2.7e-157 559.3 448 64.1
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 7.8e-157 557.8 451 63.6
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 1.7e-156 556.6 450 65.6
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 5.1e-156 555.1 464 62.7
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.5e-155 553.5 449 62.6
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.5e-155 552.7 450 64.9
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-154 550.4 450 63.6
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.2e-154 550.4 448 63.8
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.6e-154 550.1 450 63.8
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.2e-154 548.1 450 63.3
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-153 547.4 450 63.1
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.4e-153 547.0 451 63.0
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 1.4e-153 547.0 448 63.6
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.8e-153 546.6 474 62.0
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 3.1e-153 545.8 448 63.6
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 1.5e-152 543.5 449 61.9
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 2.0e-152 543.1 454 62.3
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 2.0e-152 543.1 450 61.8
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 2.6e-152 542.7 473 61.7
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.4e-152 542.3 438 64.8
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 4.4e-152 542.0 451 62.5
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 7.6e-152 541.2 448 61.6
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.3e-151 540.4 451 62.7
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 2.2e-151 539.7 450 62.2
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 3.8e-151 538.9 448 60.7
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 3.2e-150 535.8 528 55.9
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.2e-150 535.8 448 61.6
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 4.2e-150 535.4 451 62.1
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 4.2e-150 535.4 448 62.5
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 4.2e-150 535.4 447 61.5
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.6e-149 533.5 451 61.9
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 2.7e-149 532.7 449 60.8
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 4.6e-149 531.9 449 61.7
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 2.3e-148 529.6 451 61.4
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 3.9e-148 528.9 416 65.9
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 3.9e-148 528.9 448 60.5
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 5.1e-148 528.5 448 60.5
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 8.7e-148 527.7 448 59.8
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 8.7e-148 527.7 485 60.0
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 8.7e-148 527.7 448 61.4
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.1e-147 527.3 448 60.9
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 7.3e-147 524.6 449 61.2
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 9.6e-147 524.2 449 59.0
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 3.6e-146 522.3 451 61.0
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.7e-146 521.9 485 59.2
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 8.1e-146 521.2 449 60.4
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 4.0e-145 518.8 451 59.6
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.6e-144 516.2 466 57.7
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 2.6e-144 516.2 451 59.4
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 2.6e-144 516.2 447 60.0
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 5.8e-144 515.0 452 59.3
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 8.4e-143 511.1 448 59.4
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 2.4e-142 509.6 448 59.8
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 3.2e-142 509.2 443 58.5
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 5.4e-142 508.4 438 62.6
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 7.1e-142 508.1 449 59.5
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 2.3e-140 503.1 426 60.8
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 5.1e-140 501.9 439 58.1
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.1e-139 500.7 451 58.1
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.1e-139 500.7 448 58.0
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 7.3e-139 498.0 438 61.0
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 2.1e-138 496.5 451 57.9
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.1e-129 467.6 499 53.1
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 7.6e-128 461.5 560 47.3
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 3.8e-127 459.1 387 61.8
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 1.1e-126 457.6 416 58.9
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.8e-124 450.3 489 53.0
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 4.0e-121 439.1 448 51.8
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.3e-115 419.1 447 51.5
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 8.2e-114 414.8 448 50.4
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 7.7e-112 408.3 370 55.7
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.4e-108 397.5 354 62.1
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 4.8e-106 389.0 407 50.1
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 8.5e-103 378.3 329 60.5
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.0e-100 369.8 331 58.3
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 3.0e-100 369.8 340 57.6
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 8.8e-100 368.2 257 71.2
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 3.1e-97 359.8 453 45.3
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 2.1e-93 347.1 461 42.5
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 6.1e-93 345.5 235 72.3
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.1e-89 333.2 459 41.4
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 4.1e-89 332.8 250 72.4
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 5.3e-89 332.4 349 50.4
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 2.8e-82 310.1 238 63.0
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 7.0e-81 305.4 454 40.1
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 3.6e-77 293.1 277 56.7
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 2.0e-75 287.3 483 37.1
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.7e-66 256.5 430 35.3
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 7.0e-65 252.3 140 92.9
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 6.8e-60 235.7 376 36.4
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 5.0e-55 219.5 146 71.2
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 1.8e-52 211.1 113 90.3
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 1.3e-39 168.3 540 27.6
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 3.3e-38 163.7 113 74.3
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-34 151.4 121 66.1
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-34 151.4 121 66.1
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-34 151.4 121 66.1
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.9e-34 149.8 121 65.3
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.4e-34 149.1 121 65.3
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.4e-34 149.1 121 63.6
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.9e-33 147.9 94 75.5
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.7e-32 144.1 94 74.5
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.9e-31 140.2 94 71.3
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 6.9e-28 129.4 85 69.4
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 4.9e-26 123.2 80 76.2
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 6.4e-26 122.9 73 80.8
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 4.2e-25 120.2 228 36.0
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.6e-24 118.2 71 80.3
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.6e-24 118.2 79 72.2
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 4.3e-22 110.2 141 48.2
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.6e-22 109.0 64 81.2
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.6e-22 109.0 64 81.2
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.6e-21 108.2 64 81.2
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 2.4e-20 104.4 75 66.7
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.6e-19 100.9 64 78.1
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 2.6e-19 100.9 239 31.8
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 5.8e-19 99.8 123 46.3
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.2e-18 97.8 64 73.4
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 2.2e-18 97.8 69 65.2
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.5e-16 90.5 94 52.1
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.6e-16 90.1 60 75.0
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 6.7e-15 86.3 54 75.9
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 9.6e-14 82.4 65 64.6
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 2.5e-09 67.8 42 76.2
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 4.2e-09 67.0 80 41.2
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-08 65.5 115 33.9
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 3.3e-06 57.4 32 78.1


User provided reference genes

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