Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 2.0e-115 419.1 210 100.0
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 2.5e-89 332.4 250 72.4
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.6e-88 329.7 193 85.5
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.3e-85 320.1 180 87.8
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 4.6e-83 311.6 199 78.9
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 3.9e-82 308.5 193 80.8
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.5e-81 306.6 194 80.4
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 3.6e-80 302.0 193 77.2
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.4e-79 300.1 208 72.6
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 6.8e-79 297.7 208 71.2
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 5.8e-78 294.7 199 74.4
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.3e-77 293.5 210 70.5
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.2e-77 292.7 193 74.1
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.4e-76 290.0 208 70.2
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 1.9e-76 289.7 199 74.9
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 2.4e-76 289.3 193 74.1
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 4.6e-75 285.0 199 69.3
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 6.0e-75 284.6 208 69.7
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.0e-74 283.9 199 67.8
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.3e-74 282.7 208 68.8
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.3e-74 282.7 208 68.8
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 3.9e-74 282.0 201 70.1
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 6.6e-74 281.2 193 69.9
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 6.6e-74 281.2 208 69.2
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 6.6e-74 281.2 193 73.1
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 2.5e-73 279.3 193 72.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.5e-73 279.3 193 71.0
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 4.3e-73 278.5 193 71.5
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 4.3e-73 278.5 199 68.3
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 5.6e-73 278.1 193 72.0
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 7.3e-73 277.7 193 71.5
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 7.3e-73 277.7 203 68.0
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 9.5e-73 277.3 199 66.8
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 1.2e-72 276.9 208 67.8
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 1.6e-72 276.6 199 70.4
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 2.8e-72 275.8 193 69.9
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 3.6e-72 275.4 203 67.5
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 3.6e-72 275.4 195 70.3
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 4.7e-72 275.0 193 71.5
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 8.1e-72 274.2 193 70.5
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.8e-71 273.1 193 70.5
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.8e-71 273.1 193 71.0
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 5.2e-71 271.6 193 69.4
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 6.8e-71 271.2 193 68.9
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 8.9e-71 270.8 195 70.3
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 8.9e-71 270.8 195 70.3
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 2.0e-70 269.6 199 65.3
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.6e-70 269.2 199 65.8
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.6e-70 269.2 199 65.8
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 3.4e-70 268.9 207 64.7
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.4e-70 268.5 200 66.0
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 9.9e-70 267.3 200 66.0
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 9.9e-70 267.3 193 67.4
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-69 266.9 199 64.8
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 2.2e-69 266.2 217 62.2
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.7e-69 265.4 200 65.5
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 3.7e-69 265.4 199 66.8
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 8.3e-69 264.2 207 63.3
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 8.3e-69 264.2 208 63.9
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 8.3e-69 264.2 193 68.4
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.1e-68 263.8 203 65.5
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 1.1e-68 263.8 199 65.8
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 1.4e-68 263.5 193 66.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.9e-68 263.1 203 65.5
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 2.4e-68 262.7 203 64.5
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 4.1e-68 261.9 199 65.8
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 5.4e-68 261.5 202 65.3
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 5.4e-68 261.5 193 68.4
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 7.1e-68 261.2 189 70.4
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 7.1e-68 261.2 193 66.3
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 9.2e-68 260.8 200 64.5
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 9.2e-68 260.8 193 68.4
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.2e-67 260.4 202 64.4
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 1.2e-67 260.4 209 63.2
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 1.6e-67 260.0 194 66.5
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 1.6e-67 260.0 193 66.8
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 2.1e-67 259.6 193 68.4
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 3.5e-67 258.8 202 64.9
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 3.5e-67 258.8 199 64.8
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 3.5e-67 258.8 200 64.5
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 3.5e-67 258.8 193 66.3
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 3.5e-67 258.8 193 65.3
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 4.6e-67 258.5 193 67.4
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 4.6e-67 258.5 199 62.8
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 6.0e-67 258.1 199 63.3
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 7.8e-67 257.7 200 64.5
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 8.6e-66 254.2 199 63.3
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.1e-65 253.8 169 75.7
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.2e-64 250.4 242 56.2
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.5e-62 243.4 193 63.7
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.3e-61 240.4 201 60.2
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 3.8e-61 238.8 193 61.1
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 4.6e-59 231.9 157 79.6
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 5.1e-58 228.4 208 54.8
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 8.7e-58 227.6 208 55.3
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 3.1e-55 219.2 193 57.5
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 4.2e-52 208.8 173 59.0
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 6.2e-48 194.9 142 66.2
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.1e-44 184.1 131 70.2
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 7.1e-44 181.4 204 47.5
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.6e-40 170.2 195 46.7
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.7e-40 169.1 205 42.9
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 5.3e-39 165.2 200 43.5
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 6.9e-39 164.9 116 72.4
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.0e-34 151.0 243 35.8
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 2.4e-31 139.8 116 62.9
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.0e-29 134.4 171 47.4
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 6.1e-27 125.2 182 40.7
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 1.5e-25 120.6 284 28.2
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 9.7e-25 117.9 85 67.1
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 5.5e-20 102.1 126 46.8
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 3.9e-18 95.9 294 24.5
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 2.5e-17 93.2 62 69.4
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 9.1e-15 84.7 64 73.4
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-13 80.9 54 74.1
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 2.5e-12 76.6 65 63.1
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 6.7e-10 68.6 58 51.7


User provided reference genes

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