Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p002886 Quercus lobata HOM05D000184 ORTHO05D037909 1.6e-48 195.7 93 100.0
Haze_16162 Corylus avellana HOM05D000184 ORTHO05D000032 1.3e-21 106.3 70 78.6
CiPaw.02G129600 Carya illinoinensis HOM05D000184 ORTHO05D000032 1.4e-20 102.8 69 76.8
QL05p089057 Quercus lobata HOM05D000184 ORTHO05D000032 1.9e-20 102.4 69 78.3
Cfa003443 Carpinus fangiana HOM05D000184 ORTHO05D000032 1.6e-19 99.4 70 74.3
RcHm_v2.0_Chr2g0148421 Rosa chinensis HOM05D000184 ORTHO05D000032 1.2e-16 89.7 67 68.7
FAN09G2960 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.1e-15 86.7 67 65.7
FvH4_6g36430 Fragaria vesca HOM05D000184 ORTHO05D000032 3.1e-15 85.1 67 64.2
FAN14G0750 Fragaria x ananassa HOM05D000184 ORTHO05D000032 3.1e-15 85.1 67 64.2
FAN05G1546 Fragaria x ananassa HOM05D000184 ORTHO05D000032 4.0e-15 84.7 67 64.2
FAN02G0533 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.2e-14 83.2 67 62.7
TAR626G1815 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.5e-14 82.8 67 64.2
Actinidia38819 Actinidia chinensis HOM05D000184 ORTHO05D000032 2.0e-14 82.4 68 64.7
Sabra07G0002300 Salix brachista HOM05D000184 ORTHO05D000032 2.0e-14 82.4 69 63.8
Manes.06G178000 Manihot esculenta HOM05D000184 ORTHO05D000032 2.6e-14 82.0 67 68.7
MD17G1157800 Malus domestica HOM05D000184 ORTHO05D000032 3.4e-14 81.6 68 64.7
Prupe.3G027400 Prunus persica HOM05D000184 ORTHO05D000032 4.4e-14 81.3 67 65.7
Cpa.g.sc10.14 Carica papaya HOM05D000184 ORTHO05D000032 9.9e-14 80.1 69 62.3
Potri.014G000700 Populus trichocarpa HOM05D000184 ORTHO05D000032 1.3e-13 79.7 66 63.6
Duzib192G0349 Durio zibethinus HOM05D000184 ORTHO05D000032 1.7e-13 79.3 59 67.8
Gohir.A10G001000 Gossypium hirsutum HOM05D000184 ORTHO05D000032 2.9e-13 78.6 62 67.7
Gohir.D10G001200 Gossypium hirsutum HOM05D000184 ORTHO05D000032 2.9e-13 78.6 62 67.7
Gorai.011G001500 Gossypium raimondii HOM05D000184 ORTHO05D000032 2.9e-13 78.6 62 67.7
CiPaw.01G209400 Carya illinoinensis HOM05D000184 ORTHO05D000032 3.8e-13 78.2 72 62.5
Atru.chr3.4092 Acer truncatum HOM05D000184 ORTHO05D037909 4.9e-13 77.8 52 76.9
Gohir.D05G116900 Gossypium hirsutum HOM05D000184 ORTHO05D000032 8.4e-13 77.0 60 61.7
GSVIVG01029458001 Vitis vinifera HOM05D000184 ORTHO05D000032 8.4e-13 77.0 70 62.9
Gohir.A05G116080 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.4e-12 76.3 60 61.7
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 1.9e-12 75.9 67 59.7
Thecc.06G050900 Theobroma cacao HOM05D000184 ORTHO05D000032 2.4e-12 75.5 63 68.3
MD09G1169000 Malus domestica HOM05D000184 ORTHO05D000032 3.2e-12 75.1 67 62.7
COL.COLO4_26819 Corchorus olitorius HOM05D000184 ORTHO05D000032 5.4e-12 74.3 63 61.9
Gorai.009G120900 Gossypium raimondii HOM05D000184 ORTHO05D000032 7.1e-12 73.9 60 60.0
Potri.007G003200 Populus trichocarpa HOM05D000184 ORTHO05D000032 9.3e-12 73.6 69 60.9
Ciclev10030185m.g Citrus clementina HOM05D000184 ORTHO05D000032 1.2e-11 73.2 68 57.4
TWI75G1407 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 3.5e-11 71.6 67 64.2
TWI12G0722 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 1.3e-10 69.7 67 61.2
Eucgr.F04055 Eucalyptus grandis HOM05D000184 ORTHO05D000032 3.0e-10 68.6 68 50.0
AL3G24750 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 1.1e-09 66.6 69 52.2
Sp3g11190 Schrenkiella parvula HOM05D000184 ORTHO05D000032 2.5e-09 65.5 69 50.7
PSO063G6017 Papaver somniferum HOM05D000184 ORTHO05D000032 4.3e-09 64.7 51 62.7
Carub.0003s1236 Capsella rubella HOM05D000184 ORTHO05D000032 5.6e-09 64.3 69 50.7
EL10Ac7g18107 Beta vulgaris HOM05D000184 ORTHO05D000032 7.3e-09 63.9 68 50.0
CARHR087600 Cardamine hirsuta HOM05D000184 ORTHO05D000032 9.6e-09 63.5 69 49.3
AT3G13040 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 2.1e-08 62.4 69 52.2
A01p40480 Brassica napus HOM05D000184 ORTHO05D000032 2.1e-08 62.4 69 50.7
BraA01t04083Z Brassica rapa HOM05D000184 ORTHO05D000032 2.1e-08 62.4 69 50.7
Hma1.2p1_0073F.1_g038430 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 2.1e-08 62.4 70 54.3
Aa31LG8G260 Aethionema arabicum HOM05D000184 ORTHO05D000032 2.8e-08 62.0 69 50.7
A03p37970 Brassica napus HOM05D000184 ORTHO05D000032 4.8e-08 61.2 70 51.4
C01p52070 Brassica napus HOM05D000184 ORTHO05D000032 4.8e-08 61.2 69 49.3
BraA03t12951Z Brassica rapa HOM05D000184 ORTHO05D000032 4.8e-08 61.2 70 51.4
BolC1t05150H Brassica oleracea HOM05D000184 ORTHO05D000032 6.2e-08 60.8 69 49.3
MBI13_g45276_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 6.2e-08 60.8 68 54.4
PSO170G1752 Papaver somniferum HOM05D000184 ORTHO05D000032 8.1e-08 60.5 51 58.8
C03p46070 Brassica napus HOM05D000184 ORTHO05D000032 1.1e-07 60.1 70 50.0
BcaC09g48291 Brassica carinata HOM05D000184 ORTHO05D000032 1.4e-07 59.7 69 47.8
AUR62001307 Chenopodium quinoa HOM05D000184 ORTHO05D000032 3.1e-07 58.5 68 47.1
AUR62025689 Chenopodium quinoa HOM05D000184 ORTHO05D000032 3.1e-07 58.5 68 44.1
BcaNung06038 Brassica carinata HOM05D000184 ORTHO05D000032 4.0e-07 58.2 66 48.5
Aa31LG10G210 Aethionema arabicum HOM05D000184 ORTHO05D000032 1.2e-06 56.6 70 45.7
BolC3t16879H Brassica oleracea HOM05D000184 ORTHO05D000032 1.2e-06 56.6 69 49.3
THA.LOC104810280 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 1.5e-06 56.2 67 49.3
Ah.15g094240 Amaranthus hybridus HOM05D000184 ORTHO05D000032 4.4e-06 54.7 67 44.8
MBI12_g00582_MAGBIO Magnolia biondii HOM05D004970 ORTHO05D000032 4.4e-06 54.7 68 51.5
Thhalv10020738m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 9.9e-06 53.5 66 43.9


User provided reference genes

Program Settings