Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 5.4e-47 190.7 97 100.0
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 8.4e-24 113.6 106 63.2
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 1.1e-23 113.2 101 61.4
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.3e-21 106.3 97 59.8
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 3.0e-21 105.1 98 60.2
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 3.9e-21 104.8 100 57.0
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 6.7e-21 104.0 101 55.4
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 1.1e-20 103.2 98 57.1
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.5e-20 102.8 97 59.8
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.9e-20 102.4 97 60.8
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 2.5e-20 102.1 97 57.7
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 5.6e-20 100.9 105 56.2
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 1.3e-19 99.8 103 56.3
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 1.6e-19 99.4 102 52.0
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 3.7e-19 98.2 106 52.8
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 3.7e-19 98.2 97 57.7
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 4.8e-19 97.8 101 55.4
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.1e-18 96.7 102 53.9
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.4e-18 96.3 102 51.0
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 1.4e-18 96.3 98 54.1
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 3.1e-18 95.1 98 55.1
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 9.0e-18 93.6 84 56.0
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 1.2e-17 93.2 106 49.1
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 3.4e-17 91.7 66 66.7
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 4.5e-17 91.3 97 55.7
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 7.6e-17 90.5 97 50.5
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 1.3e-16 89.7 97 52.6
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.9e-16 87.8 106 47.2
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.9e-16 87.8 106 47.2
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 6.5e-16 87.4 101 52.5
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 8.4e-16 87.0 101 52.5
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 8.4e-16 87.0 97 53.6
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 8.4e-16 87.0 106 49.1
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.1e-15 86.7 107 47.7
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 1.9e-15 85.9 83 53.0
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 1.9e-15 85.9 97 50.5
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 2.5e-15 85.5 107 45.8
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.5e-15 85.5 107 45.8
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 2.5e-15 85.5 97 52.6
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 9.3e-15 83.6 106 46.2
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.6e-14 82.8 72 62.5
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 1.6e-14 82.8 82 54.9
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 2.7e-14 82.0 105 47.6
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 2.7e-14 82.0 76 60.5
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 7.9e-14 80.5 73 58.9
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 7.9e-14 80.5 101 48.5
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.0e-13 80.1 58 67.2
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 1.0e-13 80.1 101 49.5
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 1.3e-13 79.7 103 43.7
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 1.3e-13 79.7 102 44.1
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.8e-13 79.3 76 51.3
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 2.3e-13 79.0 107 46.7
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 3.0e-13 78.6 107 43.9
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 3.9e-13 78.2 110 45.5
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 5.1e-13 77.8 58 62.1
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 5.1e-13 77.8 73 56.2
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 6.7e-13 77.4 108 45.4
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 6.7e-13 77.4 94 48.9
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 8.7e-13 77.0 97 48.5
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 1.1e-12 76.6 97 46.4
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 1.9e-12 75.9 68 61.8
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 1.9e-12 75.9 94 53.2
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 2.5e-12 75.5 97 45.4
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 5.7e-12 74.3 108 41.7
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 5.7e-12 74.3 94 52.1
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 7.4e-12 73.9 107 41.1
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 9.7e-12 73.6 104 42.3
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 9.7e-12 73.6 78 52.6
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 1.6e-11 72.8 75 56.0
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 2.2e-11 72.4 59 62.7
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 2.8e-11 72.0 52 65.4
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 3.7e-11 71.6 49 71.4
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 3.7e-11 71.6 95 49.5
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 3.7e-11 71.6 57 59.6
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 3.7e-11 71.6 57 59.6
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 6.3e-11 70.9 97 44.3
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 6.3e-11 70.9 54 66.7
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 8.2e-11 70.5 64 59.4
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 1.1e-10 70.1 107 38.3
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 1.1e-10 70.1 107 38.3
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 1.8e-10 69.3 100 45.0
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 5.3e-10 67.8 45 64.4
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 9.0e-10 67.0 102 41.2
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 2.6e-09 65.5 54 61.1
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 2.6e-09 65.5 54 61.1
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 4.5e-09 64.7 110 34.5
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 5.9e-09 64.3 60 55.0
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 5.9e-09 64.3 60 55.0
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 7.6e-09 63.9 42 71.4
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.3e-08 63.2 60 53.3
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.3e-08 63.2 60 53.3
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 1.7e-08 62.8 48 64.6
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 3.2e-07 58.5 42 59.5


User provided reference genes

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