Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p002688 Quercus lobata HOM05D004597 ORTHO05D005629 3.8e-76 288.1 147 100.0
QL11p002680 Quercus lobata HOM05D004597 ORTHO05D005629 4.0e-70 268.1 146 93.8
Cfa002950 Carpinus fangiana HOM05D004597 ORTHO05D005629 1.8e-62 242.7 146 87.7
Haze_26057 Corylus avellana HOM05D004597 ORTHO05D005629 5.3e-62 241.1 146 88.4
CiPaw.03G201900 Carya illinoinensis HOM05D004597 ORTHO05D005629 1.4e-59 233.0 146 84.2
Potri.006G137500 Populus trichocarpa HOM05D004597 ORTHO05D005629 3.3e-56 221.9 146 81.5
Dinv42426 Davidia involucrata HOM05D004597 ORTHO05D005629 4.3e-56 221.5 147 79.6
Sabra06G0107600 Salix brachista HOM05D004597 ORTHO05D005629 9.7e-56 220.3 146 78.8
Potri.018G063300 Populus trichocarpa HOM05D004597 ORTHO05D005629 1.7e-55 219.5 146 80.1
Dinv25516 Davidia involucrata HOM05D004597 ORTHO05D005629 1.8e-54 216.1 147 80.3
Peaxi162Scf00191g00102 Petunia axillaris HOM05D004597 ORTHO05D005629 1.8e-54 216.1 147 78.9
Nitab4.5_0001699g0010 Nicotiana tabacum HOM05D004597 ORTHO05D005629 2.6e-53 212.2 147 78.2
Atru.chr7.1756 Acer truncatum HOM05D004597 ORTHO05D005629 4.5e-53 211.5 146 78.8
COL.COLO4_21219 Corchorus olitorius HOM05D004597 ORTHO05D005629 7.7e-53 210.7 145 77.9
TWI32G1285 Tripterygium wilfordii HOM05D004597 ORTHO05D005629 7.7e-53 210.7 146 78.1
Thecc.09G071400 Theobroma cacao HOM05D004597 ORTHO05D005629 1.7e-52 209.5 144 78.5
GSVIVG01015027001 Vitis vinifera HOM05D004597 ORTHO05D005629 5.0e-52 208.0 146 78.1
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 6.5e-52 207.6 146 74.0
Sabra18G0056100 Salix brachista HOM05D004597 ORTHO05D005629 8.5e-52 207.2 146 76.7
vmacro17088 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 1.1e-51 206.8 148 75.0
Prupe.7G193200 Prunus persica HOM05D004597 ORTHO05D005629 1.4e-51 206.5 146 74.7
Manes.16G091900 Manihot esculenta HOM05D004597 ORTHO05D005629 1.9e-51 206.1 146 74.7
CSS0048779 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 1.2e-50 203.4 151 72.8
Glyma.17G046500 Glycine max HOM05D004597 ORTHO05D005629 3.6e-50 201.8 146 74.0
RcHm_v2.0_Chr2g0095781 Rosa chinensis HOM05D004597 ORTHO05D005629 3.6e-50 201.8 146 75.3
EL10Ac8g18994 Beta vulgaris HOM05D004597 ORTHO05D005629 7.9e-50 200.7 147 73.5
Eucgr.C00774 Eucalyptus grandis HOM05D004597 ORTHO05D005629 1.8e-49 199.5 149 72.5
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 3.0e-49 198.7 148 74.3
Glyma.13G113200 Glycine max HOM05D004597 ORTHO05D005629 3.9e-49 198.4 146 73.3
Nitab4.5_0007540g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 3.9e-49 198.4 147 74.8
Actinidia30251 Actinidia chinensis HOM05D004597 ORTHO05D005629 5.1e-49 198.0 146 73.3
Ciclev10009453m.g Citrus clementina HOM05D004597 ORTHO05D005629 5.1e-49 198.0 146 76.0
FvH4_1g09250 Fragaria vesca HOM05D004597 ORTHO05D005629 8.8e-49 197.2 146 74.7
FAN19G2435 Fragaria x ananassa HOM05D004597 ORTHO05D005629 8.8e-49 197.2 146 74.7
FAN23G2914 Fragaria x ananassa HOM05D004597 ORTHO05D005629 8.8e-49 197.2 146 74.7
FAN26G0325 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.1e-48 196.8 146 74.0
FAN26G3440 Fragaria x ananassa HOM05D004597 ORTHO05D005629 3.3e-48 195.3 146 73.3
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 4.4e-48 194.9 147 74.1
Gohir.A08G246600 Gossypium hirsutum HOM05D004597 ORTHO05D005629 9.7e-48 193.7 145 71.0
AUR62028306 Chenopodium quinoa HOM05D004597 ORTHO05D005629 1.3e-47 193.4 146 70.5
Migut.J00892 Erythranthe guttata HOM05D004597 ORTHO05D005629 1.3e-47 193.4 147 72.8
Gohir.D08G267800 Gossypium hirsutum HOM05D004597 ORTHO05D005629 1.7e-47 193.0 145 71.0
Gorai.004G285400 Gossypium raimondii HOM05D004597 ORTHO05D005629 1.7e-47 193.0 145 71.0
Duzib150G0058 Durio zibethinus HOM05D004597 ORTHO05D005629 2.2e-47 192.6 146 72.6
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 2.8e-47 192.2 147 73.5
Rhsim08G0029600 Rhododendron simsii HOM05D004597 ORTHO05D005629 3.7e-47 191.8 146 71.9
Cc06_g12610 Coffea canephora HOM05D004597 ORTHO05D005629 6.3e-47 191.0 148 70.3
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 8.2e-47 190.7 147 72.8
Lalb_Chr13g0299261 Lupinus albus HOM05D004597 ORTHO05D005629 1.4e-46 189.9 147 68.7
Ah.09g229020 Amaranthus hybridus HOM05D004597 ORTHO05D005629 1.8e-46 189.5 146 71.2
CAN.G210.7 Capsicum annuum HOM05D004597 ORTHO05D005629 1.8e-46 189.5 146 72.6
Rhsim08G0029700 Rhododendron simsii HOM05D004597 ORTHO05D005629 2.4e-46 189.1 147 72.1
SalBow6G0240 Salvia bowleyana HOM05D004597 ORTHO05D005629 7.0e-46 187.6 147 71.4
Phvul.003G128266 Phaseolus vulgaris HOM05D004597 ORTHO05D005629 9.1e-46 187.2 146 70.5
Nitab4.5_0001092g0070 Nicotiana tabacum HOM05D004597 ORTHO05D005629 1.5e-45 186.4 148 70.3
SGA_v2.0_scaffold281G46915 Striga asiatica HOM05D004597 ORTHO05D005629 1.5e-45 186.4 145 70.3
Hund08871 Selenicereus undatus HOM05D004597 ORTHO05D005629 2.0e-45 186.0 146 69.2
VMungo1215G0896 Vigna mungo HOM05D004597 ORTHO05D005629 4.5e-45 184.9 146 69.2
Oeu028117.1 Olea europaea HOM05D004597 ORTHO05D005629 5.9e-45 184.5 147 69.4
PSO421G0482 Papaver somniferum HOM05D004597 ORTHO05D005629 2.9e-44 182.2 148 71.6
PGR119G0607 Punica granatum HOM05D004597 ORTHO05D005629 2.9e-44 182.2 149 69.1
CsaV3_6G002530 Cucumis sativus L. HOM05D004597 ORTHO05D005629 3.8e-44 181.8 146 69.2
MD15G1222600 Malus domestica HOM05D004597 ORTHO05D005629 3.8e-44 181.8 147 68.0
arahy.Tifrunner.gnm1.ann1.4N6INR Arachis hypogaea HOM05D004597 ORTHO05D005629 5.0e-44 181.4 147 68.0
arahy.Tifrunner.gnm1.ann1.4YLW35 Arachis hypogaea HOM05D004597 ORTHO05D005629 5.0e-44 181.4 147 68.0
MSTRG.19433 Avicennia marina HOM05D004597 ORTHO05D005629 6.5e-44 181.0 147 69.4
Oeu055329.1 Olea europaea HOM05D004597 ORTHO05D005629 1.1e-43 180.3 147 69.4
PSO104G0043 Papaver somniferum HOM05D004597 ORTHO05D005629 1.4e-43 179.9 150 68.0
Cpa.g.sc82.76 Carica papaya HOM05D004597 ORTHO05D005629 2.5e-43 179.1 147 68.0
Ca_21333_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 3.2e-43 178.7 143 67.1
Ca_30964_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 3.2e-43 178.7 143 67.1
Sc18g0002790 Simmondsia chinensis HOM05D004597 ORTHO05D005629 3.2e-43 178.7 146 67.1
PSO421G0191 Papaver somniferum HOM05D004597 ORTHO05D005629 4.2e-43 178.3 147 70.1
Nitab4.5_0000400g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 5.5e-43 177.9 148 68.9
MSTRG.26494 Avicennia marina HOM05D004597 ORTHO05D005629 7.2e-43 177.6 147 68.0
MD02G1099800 Malus domestica HOM05D004597 ORTHO05D005629 7.2e-43 177.6 147 66.7
Hund26094 Selenicereus undatus HOM05D004597 ORTHO05D005629 7.2e-43 177.6 146 65.1
Sed0000155 Sechium edule HOM05D004597 ORTHO05D005629 9.4e-43 177.2 146 65.8
Peaxi162Scf00418g00113 Petunia axillaris HOM05D004597 ORTHO05D005629 1.2e-42 176.8 147 68.7
FAN28G1763 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.6e-42 176.4 171 62.0
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 2.1e-42 176.0 146 66.4
Aqoxy7G00987 Aquilegia oxysepala HOM05D004597 ORTHO05D005629 2.7e-42 175.6 147 66.0
Medtr4g124790 Medicago truncatula HOM05D004597 ORTHO05D005629 3.6e-42 175.3 146 65.8
Aa31LG4G13040 Aethionema arabicum HOM05D004597 ORTHO05D005629 6.1e-42 174.5 145 65.5
HanXRQChr12g0354281 Helianthus annuus HOM05D004597 ORTHO05D005629 6.1e-42 174.5 155 67.1
arahy.Tifrunner.gnm1.ann1.SJ1504 Arachis hypogaea HOM05D004597 ORTHO05D005629 1.4e-41 173.3 148 66.2
DCAR_024773 Daucus carota HOM05D004597 ORTHO05D005629 1.4e-41 173.3 147 66.7
ClCG08G002020 Citrullus lanatus HOM05D004597 ORTHO05D005629 3.0e-41 172.2 156 63.5
TPR.G12546 Trifolium pratense HOM05D004597 ORTHO05D005629 3.0e-41 172.2 141 68.8
arahy.Tifrunner.gnm1.ann1.2G0Z8B Arachis hypogaea HOM05D004597 ORTHO05D005629 3.9e-41 171.8 148 66.2
CDE05G1003 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 8.8e-41 170.6 135 68.1
Lalb_Chr13g0299251 Lupinus albus HOM05D004597 ORTHO05D005629 4.4e-40 168.3 149 65.1
CDE11G0438 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 5.7e-40 167.9 135 67.4
Lj4g0020079 Lotus japonicus HOM05D004597 ORTHO05D005629 5.7e-40 167.9 109 78.9
Lsat_1_v5_gn_5_139160 Lactuca sativa HOM05D004597 ORTHO05D005629 1.7e-39 166.4 155 65.8
THA.LOC104815073 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 2.8e-39 165.6 145 62.1
Psat4g018640 Pisum sativum HOM05D004597 ORTHO05D005629 8.2e-39 164.1 145 63.4
Sed0006126 Sechium edule HOM05D004597 ORTHO05D005629 4.1e-38 161.8 146 63.7
MELO3C025034.2 Cucumis melo HOM05D004597 ORTHO05D005629 7.0e-38 161.0 183 55.2
Thhalv10021501m.g Eutrema salsugineum HOM05D004597 ORTHO05D005629 9.1e-38 160.6 146 61.6
CARHR147050 Cardamine hirsuta HOM05D004597 ORTHO05D005629 1.6e-37 159.8 145 61.4
ATR0681G150 Amborella trichopoda HOM05D004597 ORTHO05D005629 3.5e-37 158.7 147 63.9
ECA234G4331 Erigeron canadensis HOM05D004597 ORTHO05D005629 3.2e-35 152.1 100 76.0
SEGI_12051 Sequoiadendron giganteum HOM05D004597 ORTHO05D005629 4.2e-35 151.8 146 55.5
Lj4A919T43 Lonicera japonica HOM05D004597 ORTHO05D005629 7.2e-35 151.0 77 90.9
Zm00001eb278510 Zea mays HOM05D004597 ORTHO05D005629 1.2e-34 150.2 134 59.7
HPP92_019114 Vanilla planifolia HOM05D004597 ORTHO05D005629 2.7e-34 149.1 77 89.6
CSS0005573 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 6.1e-34 147.9 74 90.5
AT3G26060 Arabidopsis thaliana HOM05D004597 ORTHO05D005629 1.0e-33 147.1 145 57.9
Carub.0005s0392 Capsella rubella HOM05D004597 ORTHO05D005629 1.8e-33 146.4 146 58.9
Hma1.2p1_0169F.1_g074350 Hydrangea macrophylla HOM05D004597 ORTHO05D005629 4.0e-33 145.2 119 66.4
Lsat_1_v5_gn_6_72620 Lactuca sativa HOM05D004597 ORTHO05D005629 4.0e-33 145.2 79 86.1
AL5G14740 Arabidopsis lyrata HOM05D004597 ORTHO05D005629 5.2e-33 144.8 145 57.2
Sp5g18690 Schrenkiella parvula HOM05D004597 ORTHO05D005629 5.2e-33 144.8 146 58.2
vmacro17086 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 5.2e-33 144.8 120 67.5
BcaB02g10783 Brassica carinata HOM05D004597 ORTHO05D005629 1.5e-32 143.3 138 56.5
Lsat_1_v5_gn_3_58180 Lactuca sativa HOM05D004597 ORTHO05D005629 1.5e-32 143.3 90 76.7
A06p23440 Brassica napus HOM05D004597 ORTHO05D005629 3.3e-32 142.1 138 58.0
AUR62025300 Chenopodium quinoa HOM05D004597 ORTHO05D005629 5.7e-32 141.4 77 83.1
BcaC01g02171 Brassica carinata HOM05D004597 ORTHO05D005629 2.8e-31 139.0 138 57.2
C03p67930 Brassica napus HOM05D004597 ORTHO05D005629 2.8e-31 139.0 138 57.2
Lsat_1_v5_gn_7_82541 Lactuca sativa HOM05D004597 ORTHO05D005629 3.7e-31 138.7 123 62.6
BraA06t25436Z Brassica rapa HOM05D004597 ORTHO05D005629 8.2e-31 137.5 139 57.6
Os06g0196300 Oryza sativa ssp. japonica HOM05D004597 ORTHO05D005629 4.1e-30 135.2 140 55.0
BolC3t19018H Brassica oleracea HOM05D004597 ORTHO05D005629 7.0e-30 134.4 139 56.8
Mapoly0033s0151 Marchantia polymorpha HOM05D004597 ORTHO05D005629 1.6e-29 133.3 112 60.7
SMO146G0055 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 2.7e-26 122.5 79 67.1
Pp3c10_380 Physcomitrium patens HOM05D004597 ORTHO05D005629 3.6e-26 122.1 77 68.8
Pp3c2_15400 Physcomitrium patens HOM05D004597 ORTHO05D005629 3.4e-24 115.5 109 55.0
Pp3c25_1840 Physcomitrium patens HOM05D004597 ORTHO05D005629 7.5e-24 114.4 147 44.2
SMO239G0145 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 2.7e-21 105.9 78 61.5
THA.LOC104815153 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 2.7e-21 105.9 149 43.6
MELO3C030723.2 Cucumis melo HOM05D004597 ORTHO05D005629 9.5e-19 97.4 80 63.8
Lsat_1_v5_gn_5_125061 Lactuca sativa HOM05D004597 ORTHO05D005629 8.9e-17 90.9 57 73.7
Prupe.1G206600 Prunus persica HOM05D004597 ORTHO05D005629 1.7e-15 86.7 81 61.7
Ca_28838_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 4.9e-15 85.1 69 53.6
Cre10.g422300 Chlamydomonas reinhardtii HOM05D004597 ORTHO05D005629 5.4e-14 81.6 65 56.9
PRCOL_00006100 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 5.4e-14 81.6 77 53.2
unitig_22.g6577 Utricularia gibba HOM05D004597 ORTHO05D005629 4.5e-13 78.6 111 47.7
Oeu055331.1 Olea europaea HOM05D004597 ORTHO05D005629 4.3e-11 72.0 111 45.9
AagrBONN_evm.TU.Sc2ySwM_344.1889 Anthoceros agrestis HOM05D004597 ORTHO05D005629 2.1e-10 69.7 112 38.4
vmacro17087 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 1.8e-09 66.6 32 93.8
EL10Ac7g16812 Beta vulgaris HOM05D003127 ORTHO05D003709 3.4e-08 62.4 128 35.2
Cre06.g257601 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 7.5e-08 61.2 86 37.2
TPR.G7463 Trifolium pratense HOM05D004597 ORTHO05D005629 9.8e-08 60.8 30 93.3
Cc06_g06390 Coffea canephora HOM05D003127 ORTHO05D003709 2.9e-07 59.3 145 36.6
CAN.G574.32 Capsicum annuum HOM05D003127 ORTHO05D003709 3.7e-07 58.9 142 35.9
Hund19871 Selenicereus undatus HOM05D003127 ORTHO05D003709 4.9e-07 58.5 148 34.5
Actinidia39624 Actinidia chinensis HOM05D004597 ORTHO05D005629 6.4e-07 58.2 73 56.2
Lsat_1_v5_gn_5_40881 Lactuca sativa HOM05D004597 ORTHO05D005629 8.3e-07 57.8 35 77.1
Aqoxy4G02679 Aquilegia oxysepala HOM05D003127 ORTHO05D003709 1.9e-06 56.6 137 34.3
Oeu044715.1 Olea europaea HOM05D003127 ORTHO05D003709 1.9e-06 56.6 122 35.2
COL.COLO4_22132 Corchorus olitorius HOM05D004597 ORTHO05D005629 2.4e-06 56.2 31 83.9
COL.COLO4_36227 Corchorus olitorius HOM05D004597 ORTHO05D005629 2.4e-06 56.2 30 86.7
MCO10G030 Micromonas commoda HOM05D003127 ORTHO05D003709 2.4e-06 56.2 75 38.7
Duzib106G1688 Durio zibethinus HOM05D003127 ORTHO05D003709 5.4e-06 55.1 139 32.4
PRCOL_00002734 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 7.0e-06 54.7 75 40.0
TPR.G24405 Trifolium pratense HOM05D004597 ORTHO05D005629 7.0e-06 54.7 31 83.9
Ah.15g090500 Amaranthus hybridus HOM05D003127 ORTHO05D003709 9.2e-06 54.3 107 35.5
Sc20g0006650 Simmondsia chinensis HOM05D003127 ORTHO05D003709 9.2e-06 54.3 148 32.4


User provided reference genes

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