Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 1.8e-112 409.5 232 100.0
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 7.1e-45 184.9 200 54.0
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.6e-44 183.7 238 50.0
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 3.1e-40 169.5 91 87.9
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 5.3e-40 168.7 116 72.4
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 9.0e-40 167.9 91 83.5
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 2.6e-39 166.4 91 81.3
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.6e-39 166.4 114 73.7
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 2.6e-39 166.4 91 82.4
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 3.4e-39 166.0 91 81.3
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 7.6e-39 164.9 115 71.3
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 7.6e-39 164.9 92 81.5
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 9.9e-39 164.5 92 82.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 2.9e-38 162.9 91 80.2
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 2.9e-38 162.9 91 83.5
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 3.8e-38 162.5 91 80.2
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.9e-38 162.2 116 69.0
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 6.4e-38 161.8 91 82.4
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 6.4e-38 161.8 91 80.2
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 1.9e-37 160.2 91 78.0
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.4e-37 159.8 91 79.1
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.4e-37 159.8 91 79.1
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.6e-36 157.1 91 75.8
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 2.7e-36 156.4 208 52.4
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 3.5e-36 156.0 91 75.8
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.6e-36 155.6 136 64.7
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 6.0e-36 155.2 91 78.0
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 6.0e-36 155.2 87 80.5
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 7.9e-36 154.8 156 57.1
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.8e-35 153.7 91 75.8
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.8e-35 153.7 91 79.1
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.3e-35 153.3 91 78.0
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.3e-35 153.3 92 78.3
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.0e-35 152.9 91 76.9
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.1e-34 151.0 91 78.0
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 5.6e-34 148.7 89 74.2
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 5.6e-34 148.7 91 72.5
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 5.6e-34 148.7 91 72.5
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 9.6e-34 147.9 135 56.3
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 9.6e-34 147.9 92 73.9
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 9.6e-34 147.9 91 78.0
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.3e-33 147.5 92 69.6
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 1.3e-33 147.5 90 76.7
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 1.3e-33 147.5 91 74.7
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.6e-33 147.1 94 74.5
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.8e-33 146.4 91 73.6
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 3.7e-33 146.0 92 73.9
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 3.7e-33 146.0 92 75.0
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 6.2e-33 145.2 91 73.6
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.4e-32 144.1 92 73.9
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 3.1e-32 142.9 92 69.6
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 3.1e-32 142.9 189 49.2
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 4.0e-32 142.5 93 71.0
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.3e-32 142.1 90 71.1
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.3e-32 142.1 90 71.1
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 6.9e-32 141.7 91 70.3
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 9.0e-32 141.4 92 71.7
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 1.2e-31 141.0 91 69.2
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.2e-31 141.0 91 73.6
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 1.5e-31 140.6 88 73.9
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-31 140.6 88 72.7
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.5e-31 140.6 93 71.0
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 2.0e-31 140.2 158 51.9
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.6e-31 139.8 88 72.7
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 4.5e-31 139.0 92 69.6
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 4.5e-31 139.0 92 69.6
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 4.5e-31 139.0 92 69.6
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.8e-31 138.7 79 82.3
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.0e-30 137.9 80 81.2
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.3e-30 137.5 92 69.6
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-30 137.1 88 71.6
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.9e-30 135.6 91 69.2
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 6.5e-30 135.2 105 61.9
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 6.5e-30 135.2 91 70.3
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 6.5e-30 135.2 91 69.2
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 8.4e-30 134.8 92 70.7
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 8.4e-30 134.8 89 68.5
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.4e-29 134.0 123 56.9
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.4e-29 134.0 123 56.9
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 4.2e-29 132.5 79 79.7
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.5e-29 132.1 86 73.3
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 5.5e-29 132.1 104 62.5
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 7.1e-29 131.7 91 68.1
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.6e-28 129.0 88 70.5
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 7.9e-28 128.3 85 70.6
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.0e-27 127.9 110 58.2
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.0e-27 127.9 79 73.4
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.3e-27 127.5 94 67.0
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.3e-27 127.5 94 67.0
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.8e-27 127.1 91 67.0
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 5.1e-27 125.6 145 50.3
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 8.7e-27 124.8 84 67.9
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 8.7e-27 124.8 79 70.9
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 2.5e-26 123.2 81 74.1
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.6e-25 120.6 191 45.0
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 4.8e-25 119.0 197 47.2
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 6.3e-25 118.6 100 58.0
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 8.2e-25 118.2 97 66.0
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.1e-24 117.9 89 68.5
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.1e-24 117.9 89 58.4
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.3e-24 115.5 64 79.7
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 2.0e-23 113.6 120 50.0
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.3e-22 110.9 65 81.5
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.8e-22 109.4 77 64.9
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 8.5e-22 108.2 77 63.6
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 3.2e-21 106.3 65 76.9
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 5.5e-21 105.5 91 62.6
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 2.7e-20 103.2 62 74.2
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.6e-20 102.8 79 58.2
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 7.9e-20 101.7 92 53.3
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.8e-19 100.5 65 72.3
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 2.3e-19 100.1 92 54.3
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 2.3e-19 100.1 61 72.1
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 3.0e-19 99.8 93 52.7
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.1e-18 97.8 53 84.9
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.1e-18 97.8 85 50.6
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 2.5e-18 96.7 93 50.5
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 1.7e-17 94.0 92 46.7
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 2.2e-17 93.6 92 46.7
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.7e-17 92.8 91 50.5
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.8e-17 92.4 49 87.8
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 8.2e-17 91.7 182 40.7
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.4e-16 90.9 111 45.9
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.4e-16 90.9 85 50.6
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 2.4e-16 90.1 210 36.2
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.4e-16 90.1 79 57.0
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.3e-16 89.0 51 80.4
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 6.9e-16 88.6 63 68.3
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.2e-15 87.8 222 34.2
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.2e-15 87.8 82 54.9
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.5e-15 87.4 92 48.9
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.5e-15 87.4 91 48.4
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 5.9e-15 85.5 49 81.6
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 2.2e-14 83.6 91 49.5
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 2.2e-14 83.6 49 77.6
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.9e-14 83.2 142 44.4
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 2.9e-14 83.2 80 53.8
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.4e-13 80.9 54 70.4
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.9e-13 80.5 77 54.5
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.2e-13 79.7 68 48.5
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 4.2e-13 79.3 78 51.3
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 7.2e-13 78.6 80 50.0
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 7.2e-13 78.6 96 44.8
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 9.4e-13 78.2 65 58.5
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 1.2e-12 77.8 93 44.1
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.6e-12 77.4 86 48.8
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 4.7e-12 75.9 62 56.5
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.4e-11 74.3 65 55.4
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 8.8e-11 71.6 100 41.0
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 5.7e-10 68.9 49 69.4
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 7.4e-10 68.6 42 69.0
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 9.7e-10 68.2 55 67.3
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 2.2e-09 67.0 51 58.8
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.1e-08 64.7 68 44.1
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.4e-08 64.3 60 56.7
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.8e-08 63.9 37 83.8
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.8e-08 63.9 33 90.9
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 2.4e-08 63.5 38 78.9
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.1e-08 63.2 31 93.5
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 9.1e-08 61.6 32 87.5
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 9.1e-08 61.6 32 90.6
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.2e-07 61.2 43 67.4
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 2.0e-07 60.5 41 70.7
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.6e-07 60.1 31 90.3
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 4.5e-07 59.3 46 65.2
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 5.9e-07 58.9 65 38.5
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 7.7e-07 58.5 31 87.1
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 1.7e-06 57.4 65 52.3
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.7e-06 57.4 191 38.7
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 8.5e-06 55.1 55 47.3
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 8.5e-06 55.1 34 73.5


User provided reference genes

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