Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 2.3e-103 379.0 208 100.0
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 2.0e-91 339.3 208 86.5
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 7.2e-89 330.9 208 82.7
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 1.6e-88 329.7 208 81.7
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 1.5e-86 323.2 210 82.9
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 7.4e-86 320.9 209 84.2
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 4.8e-85 318.2 208 80.3
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.8e-84 316.2 208 79.8
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 2.4e-84 315.8 210 80.5
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 7.7e-83 310.8 208 78.8
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 7.7e-83 310.8 207 78.3
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 3.8e-82 308.5 211 80.6
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 6.5e-82 307.8 208 77.4
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 4.2e-81 305.1 208 77.9
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 7.2e-81 304.3 208 77.4
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 9.4e-81 303.9 208 78.4
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 1.6e-80 303.1 208 76.9
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 1.6e-80 303.1 211 77.7
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 3.6e-80 302.0 207 78.3
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 3.6e-80 302.0 208 76.9
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.8e-79 299.7 200 80.0
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.3e-79 299.3 208 76.0
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 3.0e-79 298.9 208 76.4
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 2.0e-78 296.2 209 75.6
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 2.6e-78 295.8 206 75.2
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 3.3e-78 295.4 211 76.8
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 2.2e-77 292.7 207 74.4
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 2.8e-77 292.4 203 77.3
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 3.7e-77 292.0 207 74.9
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 6.3e-77 291.2 208 74.5
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 8.2e-77 290.8 206 74.3
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 1.1e-76 290.4 209 73.7
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.4e-76 290.0 208 73.1
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 1.8e-76 289.7 205 73.2
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 1.6e-75 286.6 206 72.8
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 2.9e-74 282.3 209 75.6
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 5.0e-74 281.6 208 73.1
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 3.2e-73 278.9 208 73.1
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 4.2e-73 278.5 207 71.5
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 7.2e-73 277.7 209 73.7
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.6e-72 276.6 181 79.0
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 1.6e-72 276.6 208 70.2
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 2.7e-72 275.8 208 69.7
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 6.1e-72 274.6 207 70.0
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 5.2e-71 271.6 208 69.2
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 2.2e-69 266.2 205 71.2
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 3.1e-68 262.3 207 68.6
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 1.0e-66 257.3 209 65.6
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 2.9e-66 255.8 207 63.8
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 2.5e-65 252.7 198 69.7
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 7.2e-65 251.1 207 68.6
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 3.6e-64 248.8 206 65.0
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 3.6e-64 248.8 208 63.0
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.4e-63 246.9 169 76.3
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 6.8e-63 244.6 208 65.9
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 2.0e-62 243.0 208 65.4
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 2.0e-59 233.0 159 74.8
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 5.9e-59 231.5 207 63.8
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 1.9e-57 226.5 208 61.1
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 6.0e-51 204.9 184 61.4
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 6.8e-47 191.4 217 54.8
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 1.7e-45 186.8 203 53.7
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 1.1e-44 184.1 202 52.5
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 4.7e-40 168.7 208 47.6
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 2.0e-38 163.3 105 79.0
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 2.6e-38 162.9 105 78.1
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 1.1e-28 131.0 105 61.9
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 3.2e-28 129.4 127 58.3
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.1e-25 120.9 111 61.3
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 1.6e-24 117.1 207 39.6
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 6.9e-23 111.7 84 67.9
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 3.4e-22 109.4 92 62.0
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 3.5e-19 99.4 114 43.0
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 2.5e-17 93.2 201 35.3
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 8.1e-16 88.2 188 36.7
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 6.9e-15 85.1 165 40.6
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.2e-11 74.3 54 68.5
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 5.6e-09 65.5 184 31.5
Mapoly0038s0092 Marchantia polymorpha HOM05D016812 ORTHO05D010187 9.6e-09 64.7 187 31.0
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 4.8e-08 62.4 120 37.5
Pp3c10_8870 Physcomitrium patens HOM05D016812 ORTHO05D024947 4.0e-07 59.3 206 26.7
CBR_g8990 Chara braunii HOM05D016812 ORTHO05D024947 1.5e-06 57.4 188 26.6


User provided reference genes

Program Settings