Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 5.4e-150 534.3 262 100.0
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 7.8e-141 503.8 253 97.2
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.6e-114 416.4 253 79.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 6.9e-113 411.0 253 78.7
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 4.9e-103 378.3 262 75.6
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 6.0e-101 371.3 253 71.9
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 2.5e-91 339.3 254 67.3
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 3.1e-89 332.4 255 63.5
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 2.9e-87 325.9 253 62.5
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 2.1e-85 319.7 253 60.5
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.5e-83 313.5 253 61.3
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.0e-83 313.2 253 60.5
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.0e-83 313.2 253 61.3
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 2.6e-83 312.8 253 60.5
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 4.4e-83 312.0 252 62.3
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 4.4e-83 312.0 253 63.2
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 2.2e-82 309.7 252 61.9
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 2.2e-82 309.7 255 62.7
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.4e-81 307.0 252 63.1
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.8e-81 306.6 252 61.9
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 1.5e-80 303.5 253 60.1
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 4.5e-80 302.0 253 60.5
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.3e-79 300.4 252 60.7
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 6.5e-79 298.1 252 60.3
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 8.5e-79 297.7 254 61.0
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 8.0e-77 291.2 253 60.1
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.3e-76 289.7 257 54.9
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 3.9e-76 288.9 252 59.9
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 6.7e-76 288.1 259 54.8
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 8.8e-76 287.7 259 54.8
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 9.7e-75 284.3 253 56.9
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 6.3e-74 281.6 250 56.8
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 8.2e-74 281.2 254 55.5
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.6e-72 276.9 254 54.3
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 3.5e-72 275.8 253 55.7
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 3.5e-72 275.8 249 57.8
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 5.9e-72 275.0 255 56.1
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 1.3e-71 273.9 253 55.3
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 5.0e-71 271.9 253 53.8
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 5.0e-71 271.9 248 55.6
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 8.5e-71 271.2 251 57.4
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.5e-70 270.4 247 56.7
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.2e-70 269.2 252 53.6
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 3.2e-70 269.2 253 53.0
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 3.2e-70 269.2 248 54.8
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 4.2e-70 268.9 258 53.9
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 4.2e-70 268.9 251 55.0
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.5e-70 268.5 248 56.0
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 5.5e-70 268.5 255 54.5
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 5.5e-70 268.5 141 94.3
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.4e-70 267.7 248 56.5
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.1e-69 266.5 253 53.0
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 6.1e-69 265.0 250 54.4
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 6.1e-69 265.0 248 54.8
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 1.2e-67 260.8 256 56.6
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 7.5e-67 258.1 253 53.4
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 9.7e-67 257.7 255 57.6
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.3e-66 257.3 254 52.0
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.1e-65 254.2 253 51.4
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 5.3e-65 251.9 253 50.6
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 7.0e-65 251.5 253 53.0
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.2e-64 250.8 253 51.8
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 1.0e-63 247.7 253 49.8
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 1.3e-63 247.3 193 63.7
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 1.7e-63 246.9 251 53.4
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 2.9e-63 246.1 253 53.0
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.8e-63 245.7 258 49.6
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 8.5e-63 244.6 255 54.9
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 3.2e-62 242.7 258 49.6
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.2e-61 240.7 254 52.4
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 2.1e-61 240.0 258 48.8
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.1e-61 240.0 258 48.8
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 6.1e-61 238.4 258 48.4
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 6.1e-61 238.4 255 53.7
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 6.1e-61 238.4 247 48.2
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 8.0e-61 238.0 258 49.2
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 1.0e-60 237.7 260 46.9
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 1.4e-60 237.3 254 48.4
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 1.4e-60 237.3 260 48.5
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 3.0e-60 236.1 256 50.0
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.2e-59 234.2 258 48.1
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 2.6e-59 233.0 244 50.4
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 2.2e-58 229.9 239 51.0
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 4.8e-58 228.8 225 52.4
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 6.3e-58 228.4 247 49.4
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 4.1e-57 225.7 244 49.6
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 2.7e-56 223.0 244 48.0
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 4.5e-56 222.2 239 49.8
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 7.7e-56 221.5 244 47.5
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 2.3e-55 219.9 245 46.1
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 2.9e-55 219.5 232 49.1
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 5.0e-55 218.8 232 49.1
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 2.1e-53 213.4 247 45.3
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 4.0e-52 209.1 247 44.5
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 8.9e-52 208.0 257 40.1
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 2.0e-51 206.8 257 40.9
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 2.6e-51 206.5 247 44.5
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 4.4e-51 205.7 247 44.5
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-47 193.7 194 54.1
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 2.9e-47 193.0 246 43.5
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 4.3e-46 189.1 253 43.5
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 7.3e-46 188.3 238 44.1
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 9.5e-46 188.0 236 43.2
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 6.8e-44 181.8 238 43.3
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 3.4e-43 179.5 250 44.4
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.8e-43 177.9 174 55.2
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 2.2e-42 176.8 251 41.0
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 2.6e-35 153.3 132 56.8
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 5.8e-35 152.1 132 56.8
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 9.8e-35 151.4 153 49.7
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.2e-32 144.4 169 51.5
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.1e-32 143.7 152 48.7
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.5e-32 142.9 152 49.3
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 3.1e-28 129.8 241 36.9
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 1.3e-23 114.4 148 44.6
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 1.7e-23 114.0 250 32.4
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.9e-23 112.8 118 47.5
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 8.6e-23 111.7 101 51.5
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-21 107.8 118 44.9
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.7e-18 97.4 108 53.7
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 2.2e-18 97.1 75 65.3
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 3.5e-16 89.7 225 31.1
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.3e-15 87.0 82 58.5
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.3e-15 87.0 89 49.4
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.0e-15 86.7 75 60.0
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.9e-15 86.3 75 60.0
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 2.1e-13 80.5 81 50.6
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.8e-13 79.3 75 56.0
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 4.0e-12 76.3 102 41.2
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.6e-11 73.6 72 56.9
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-10 70.9 73 49.3
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 5.4e-09 65.9 64 46.9
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.6e-08 64.3 70 40.0
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.6e-08 64.3 70 40.0
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 5.1e-07 59.3 63 42.9
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 1.5e-06 57.8 55 50.9


User provided reference genes

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