Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 3.0e-54 214.9 107 100.0
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.5e-53 212.6 107 99.1
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 9.5e-53 209.9 107 98.1
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 3.1e-51 204.9 107 91.6
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 4.0e-51 204.5 107 92.5
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 8.9e-51 203.4 107 91.6
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 9.9e-50 199.9 106 90.6
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.7e-49 198.0 107 88.8
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 6.4e-49 197.2 107 87.9
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 8.3e-49 196.8 107 89.7
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.4e-48 196.1 107 88.8
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 3.2e-48 194.9 107 87.9
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 3.2e-48 194.9 107 88.8
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 4.1e-48 194.5 103 93.2
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 5.4e-48 194.1 107 90.7
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 7.1e-48 193.7 107 87.9
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 9.2e-48 193.4 103 91.3
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 9.2e-48 193.4 108 88.9
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.2e-47 193.0 107 86.9
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.1e-47 192.2 107 86.0
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.1e-47 192.2 107 86.0
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 2.7e-47 191.8 107 86.9
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 2.7e-47 191.8 106 87.7
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.5e-47 191.4 101 92.1
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 3.5e-47 191.4 104 90.4
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 3.5e-47 191.4 104 90.4
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.5e-47 191.4 106 88.7
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 4.6e-47 191.0 106 88.7
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 4.6e-47 191.0 107 86.9
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 4.6e-47 191.0 106 87.7
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.0e-47 190.7 107 86.0
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 6.0e-47 190.7 107 88.8
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 6.0e-47 190.7 106 87.7
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 7.8e-47 190.3 107 86.0
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.8e-47 190.3 107 86.0
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.8e-47 190.3 107 86.0
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.8e-47 190.3 107 86.0
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 7.8e-47 190.3 107 88.8
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 7.8e-47 190.3 107 86.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 1.0e-46 189.9 106 86.8
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 1.0e-46 189.9 107 86.0
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 1.0e-46 189.9 104 89.4
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 1.0e-46 189.9 104 89.4
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.0e-46 189.9 106 84.9
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 1.3e-46 189.5 107 85.0
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.7e-46 189.1 106 85.8
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 2.3e-46 188.7 107 86.0
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.0e-46 188.3 106 84.0
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 3.9e-46 188.0 106 85.8
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 5.1e-46 187.6 103 87.4
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 5.1e-46 187.6 107 84.1
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 6.6e-46 187.2 106 85.8
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.1e-45 186.4 106 84.9
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.1e-45 186.4 106 84.9
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 1.5e-45 186.0 107 85.0
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.5e-45 186.0 107 85.0
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.5e-45 186.0 107 84.1
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 1.5e-45 186.0 107 86.9
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 1.9e-45 185.7 104 85.6
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.9e-45 185.7 107 85.0
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.5e-45 185.3 104 87.5
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.3e-45 184.9 107 83.2
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 5.6e-45 184.1 107 84.1
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 5.6e-45 184.1 107 84.1
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 5.6e-45 184.1 106 83.0
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 5.6e-45 184.1 103 86.4
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 7.3e-45 183.7 107 82.2
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 7.3e-45 183.7 107 84.1
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.2e-44 183.0 104 86.5
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.2e-44 183.0 106 84.0
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.6e-44 182.6 107 82.2
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 1.6e-44 182.6 107 80.4
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.6e-44 182.6 106 82.1
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.1e-44 182.2 100 87.0
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 2.1e-44 182.2 106 82.1
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 2.1e-44 182.2 105 82.9
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.8e-44 181.8 107 82.2
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 2.8e-44 181.8 104 83.7
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 4.7e-44 181.0 106 84.0
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 4.7e-44 181.0 105 81.9
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 8.1e-44 180.3 103 84.5
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.4e-43 179.5 98 86.7
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.4e-43 179.5 104 82.7
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 1.4e-43 179.5 103 83.5
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 4.0e-43 177.9 100 85.0
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 4.0e-43 177.9 107 79.4
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 6.8e-43 177.2 98 87.8
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 2.6e-42 175.3 108 83.3
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 5.8e-42 174.1 99 85.9
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 5.8e-42 174.1 98 84.7
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.3e-41 172.9 107 77.6
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 2.2e-41 172.2 98 84.7
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 4.9e-41 171.0 107 77.6
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 8.4e-41 170.2 104 76.0
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.9e-40 169.1 104 76.0
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.9e-40 169.1 100 78.0
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.9e-40 169.1 107 76.6
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.9e-40 169.1 107 76.6
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.4e-40 168.7 107 72.9
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 3.2e-40 168.3 98 81.6
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 3.2e-40 168.3 106 77.4
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 7.1e-40 167.2 107 73.8
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 9.2e-40 166.8 107 76.6
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 9.2e-40 166.8 107 74.8
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 9.2e-40 166.8 95 87.4
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 2.7e-39 165.2 107 76.6
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 6.0e-39 164.1 107 75.7
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 6.0e-39 164.1 110 75.5
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.7e-38 162.5 98 79.6
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.7e-38 162.5 106 74.5
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 3.0e-38 161.8 102 78.4
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.5e-37 159.5 107 77.6
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.2e-36 156.4 98 76.5
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 4.0e-35 151.4 107 67.3
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 9.0e-35 150.2 107 66.4
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-34 149.8 107 66.4
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 1.2e-34 149.8 107 66.4
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 1.5e-34 149.4 105 67.6
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 3.4e-34 148.3 107 66.4
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 3.4e-34 148.3 107 65.4
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 3.4e-34 148.3 107 65.4
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 3.4e-34 148.3 107 65.4
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 5.8e-34 147.5 107 67.3
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 2.2e-33 145.6 102 65.7
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 2.9e-33 145.2 107 64.5
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 3.8e-33 144.8 107 64.5
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 6.4e-33 144.1 87 81.6
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 8.4e-33 143.7 107 65.4
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 8.4e-33 143.7 108 64.8
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 8.4e-33 143.7 108 64.8
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 8.4e-33 143.7 108 64.8
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 8.4e-33 143.7 108 64.8
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.1e-32 143.3 107 64.5
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 1.4e-32 142.9 99 68.7
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-31 139.8 107 71.0
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.6e-31 139.4 107 63.6
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.5e-31 138.3 103 64.1
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 4.6e-31 137.9 92 78.3
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 4.8e-28 127.9 66 90.9
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 4.8e-28 127.9 98 60.2
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 9.9e-26 120.2 81 69.1
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 9.9e-26 120.2 91 65.9
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 6.4e-25 117.5 65 86.2
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 6.4e-25 117.5 93 64.5
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.9e-24 115.9 91 62.6
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 4.2e-24 114.8 96 61.5
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 9.3e-24 113.6 96 61.5
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 9.3e-24 113.6 75 77.3
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.3e-22 109.8 88 61.4
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.5e-21 105.5 97 55.7
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 2.8e-20 102.1 56 83.9
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 2.4e-19 99.0 94 55.3
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 4.0e-19 98.2 56 83.9
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 5.3e-19 97.8 57 86.0
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.0e-18 95.9 58 84.5
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.4e-18 95.1 79 63.3
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 1.3e-17 93.2 57 77.2
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.9e-16 89.4 107 48.6
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 3.7e-12 75.1 86 46.5
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 2.4e-11 72.4 44 79.5
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.4e-08 63.2 83 43.4


User provided reference genes

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