Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 4.4e-112 407.9 198 100.0
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 2.2e-103 379.0 262 75.6
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 1.9e-94 349.4 253 72.3
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.5e-72 276.6 253 57.7
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 6.4e-71 271.2 253 56.5
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 7.6e-64 247.7 253 53.0
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 1.0e-55 220.7 253 48.6
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 3.2e-54 215.7 253 45.5
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 3.0e-52 209.1 235 48.5
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 3.0e-52 209.1 255 45.1
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 1.3e-50 203.8 252 45.6
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 4.1e-49 198.7 253 43.1
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 9.0e-49 197.6 253 45.1
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 2.0e-48 196.4 252 43.7
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 2.0e-48 196.4 253 42.7
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.0e-48 196.4 253 42.7
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 4.5e-48 195.3 252 44.8
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 4.5e-48 195.3 253 43.1
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.3e-47 193.7 253 42.7
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 2.2e-47 193.0 255 44.3
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 5.0e-47 191.8 252 44.4
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.1e-46 190.7 252 44.0
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.1e-46 190.7 252 44.0
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.1e-46 190.7 227 48.0
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.4e-46 190.3 256 40.2
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 2.5e-46 189.5 254 44.9
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.5e-46 189.5 258 40.3
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 4.2e-46 188.7 258 40.3
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 5.1e-44 181.8 254 39.8
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 8.8e-44 181.0 253 41.5
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 2.0e-43 179.9 252 43.3
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 4.3e-43 178.7 252 42.9
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 9.7e-43 177.6 252 42.1
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 9.7e-43 177.6 253 41.9
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 2.2e-42 176.4 254 39.4
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 1.1e-41 174.1 178 51.1
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.4e-41 173.7 246 41.5
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 1.4e-41 173.7 247 41.7
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.8e-41 173.3 253 38.3
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 1.8e-41 173.3 250 40.4
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 3.1e-41 172.6 253 38.7
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 3.1e-41 172.6 247 42.1
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 5.3e-41 171.8 248 41.9
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 9.1e-41 171.0 255 41.2
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 2.6e-40 169.5 254 43.3
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.6e-40 169.5 247 41.3
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 5.9e-40 168.3 250 40.4
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 5.9e-40 168.3 247 41.3
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-39 167.2 247 41.3
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 1.7e-39 166.8 250 40.0
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 1.7e-39 166.8 250 41.6
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 2.9e-39 166.0 253 39.9
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 5.0e-39 165.2 253 39.5
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 8.5e-39 164.5 253 38.3
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 1.4e-38 163.7 254 41.7
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 3.2e-38 162.5 253 37.2
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 4.2e-38 162.2 253 38.7
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 9.4e-38 161.0 253 37.5
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.2e-37 160.6 252 37.7
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.6e-37 160.2 253 38.7
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 1.6e-37 160.2 253 39.9
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 2.7e-37 159.5 177 46.9
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 7.9e-37 157.9 255 41.6
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 7.9e-37 157.9 250 39.2
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 7.9e-37 157.9 246 40.2
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.0e-36 157.5 254 37.8
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 1.0e-36 157.5 211 45.5
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.8e-36 156.8 255 38.4
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 6.7e-36 154.8 258 36.4
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 4.4e-35 152.1 247 36.4
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 9.7e-35 151.0 260 36.9
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 1.7e-34 150.2 260 35.0
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 2.2e-34 149.8 258 35.7
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.8e-34 149.4 258 36.0
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 3.7e-34 149.1 258 35.7
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 6.3e-34 148.3 258 35.3
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 8.2e-34 147.9 253 34.4
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 1.4e-33 147.1 253 34.8
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 7.0e-33 144.8 258 35.7
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 7.0e-33 144.8 258 35.3
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 2.9e-31 139.4 224 37.9
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 1.1e-30 137.5 244 36.1
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 1.5e-30 137.1 256 35.9
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 1.9e-30 136.7 172 45.9
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 7.2e-30 134.8 175 42.9
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 7.2e-30 134.8 172 44.8
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 1.2e-29 134.0 190 42.6
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 8.0e-29 131.3 244 33.6
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 1.8e-28 130.2 190 41.1
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 1.8e-28 130.2 176 41.5
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 3.0e-28 129.4 176 41.5
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 7.5e-27 124.8 173 42.2
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 1.3e-26 124.0 166 40.4
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 2.2e-26 123.2 166 40.4
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 1.1e-25 120.9 166 40.4
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 1.8e-25 120.2 257 28.4
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 1.8e-25 120.2 257 29.6
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 3.1e-25 119.4 166 39.8
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 5.3e-25 118.6 245 31.8
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.6e-24 117.1 232 32.8
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 2.7e-24 116.3 141 50.4
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 6.5e-23 111.7 101 51.5
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 1.1e-22 110.9 173 38.7
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.5e-22 108.6 113 46.9
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 2.1e-21 106.7 247 30.8
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 2.7e-21 106.3 233 30.9
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 4.7e-21 105.5 235 30.2
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-20 103.6 113 44.2
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.2e-19 100.9 181 38.1
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.5e-19 98.2 115 43.5
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 7.5e-19 98.2 143 44.8
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-18 97.4 110 45.5
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-18 96.7 193 35.2
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.0e-15 87.8 143 40.6
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.4e-14 81.3 173 34.1
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-13 80.5 126 42.9
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 4.7e-13 79.0 150 33.3
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 3.0e-12 76.3 102 41.2
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.8e-12 74.7 81 46.9
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 3.7e-10 69.3 90 41.1
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 1.1e-09 67.8 76 48.7
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 4.1e-09 65.9 64 46.9
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.2e-08 64.3 70 40.0
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.2e-08 64.3 70 40.0
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 3.8e-07 59.3 63 42.9
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.6e-07 58.5 65 46.2
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-06 57.4 47 61.7
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-06 57.0 47 61.7
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.5e-06 56.6 71 49.3
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 3.3e-06 56.2 47 59.6
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 3.3e-06 56.2 54 50.0
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 5.6e-06 55.5 116 32.8


User provided reference genes

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