Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 6.4e-188 660.6 335 100.0
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 1.2e-186 656.4 335 99.1
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 8.7e-145 517.3 332 80.4
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 9.6e-144 513.8 337 79.5
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 2.0e-141 506.1 336 77.7
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 7.6e-141 504.2 334 80.5
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 2.2e-140 502.7 337 77.2
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 1.4e-139 500.0 337 76.0
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.4e-139 500.0 338 77.2
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 9.3e-139 497.3 286 85.3
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 2.3e-137 492.7 319 76.5
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 1.9e-136 489.6 307 80.8
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 2.2e-135 486.1 343 73.8
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 4.8e-135 485.0 283 83.0
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.3e-135 484.6 317 77.3
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 6.3e-135 484.6 315 76.5
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 6.3e-135 484.6 336 73.2
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 8.2e-135 484.2 317 77.0
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 8.2e-135 484.2 317 75.7
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.1e-134 483.8 283 83.7
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.4e-134 483.4 317 76.7
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 1.8e-134 483.0 329 74.8
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 5.3e-134 481.5 281 82.9
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 6.9e-134 481.1 312 77.6
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 6.9e-134 481.1 309 78.0
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 9.1e-134 480.7 344 73.3
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.2e-133 480.3 283 83.7
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.5e-133 479.9 319 75.2
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 3.4e-133 478.8 323 75.9
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.0e-132 477.2 317 75.4
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 1.3e-132 476.9 306 78.1
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.7e-132 476.5 302 79.5
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.7e-132 476.5 326 73.6
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.8e-132 475.3 330 74.5
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.8e-132 475.3 326 74.5
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 8.5e-132 474.2 302 77.5
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.5e-131 472.6 308 77.3
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 2.5e-131 472.6 301 78.1
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.5e-131 472.6 313 75.1
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 3.2e-131 472.2 283 81.3
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 3.2e-131 472.2 326 73.9
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 4.2e-131 471.9 275 82.2
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.2e-131 471.9 275 82.9
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 4.2e-131 471.9 275 82.9
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 5.5e-131 471.5 275 82.2
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 5.5e-131 471.5 275 82.2
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 7.2e-131 471.1 302 76.8
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 7.2e-131 471.1 275 82.9
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 7.2e-131 471.1 306 77.5
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 9.4e-131 470.7 287 80.5
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.2e-130 470.3 275 81.8
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 1.2e-130 470.3 275 82.2
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 1.2e-130 470.3 275 82.2
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.6e-130 469.9 304 76.3
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 2.1e-130 469.5 275 81.5
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.6e-130 468.4 311 75.2
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.8e-129 466.5 333 71.8
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 2.3e-129 466.1 275 81.5
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 2.3e-129 466.1 275 81.1
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 3.9e-129 465.3 309 75.4
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 3.9e-129 465.3 321 71.7
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 5.1e-129 464.9 275 81.1
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 6.7e-129 464.5 275 81.5
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 6.7e-129 464.5 275 80.7
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 8.8e-129 464.2 273 81.0
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.5e-128 463.4 318 72.6
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.5e-128 463.4 275 80.4
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 3.3e-128 462.2 273 80.6
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 3.3e-128 462.2 330 70.9
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 4.4e-128 461.8 331 70.4
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 4.4e-128 461.8 307 74.6
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 5.7e-128 461.5 333 70.9
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 7.4e-128 461.1 334 74.6
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 1.3e-127 460.3 271 81.9
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 1.7e-127 459.9 273 80.2
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.7e-127 459.9 332 71.4
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.2e-127 459.5 330 72.1
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 3.7e-127 458.8 275 79.6
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 4.8e-127 458.4 284 79.6
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 6.3e-127 458.0 331 71.0
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 6.3e-127 458.0 314 72.9
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 6.3e-127 458.0 307 73.9
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 8.2e-127 457.6 329 70.2
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.4e-126 456.8 333 70.0
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 2.4e-126 456.1 331 70.1
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 2.4e-126 456.1 313 73.8
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 2.4e-126 456.1 336 69.6
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 3.1e-126 455.7 333 70.6
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 3.1e-126 455.7 318 72.6
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 3.1e-126 455.7 275 79.3
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 5.3e-126 454.9 325 72.0
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.5e-125 453.4 333 70.0
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 2.0e-125 453.0 275 80.0
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.0e-125 453.0 330 70.3
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 2.6e-125 452.6 315 71.7
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 2.6e-125 452.6 271 82.3
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 3.4e-125 452.2 336 68.2
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 5.9e-125 451.4 273 79.9
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 7.7e-125 451.1 300 74.7
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.3e-124 450.3 316 72.5
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.9e-123 446.4 337 68.5
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 1.9e-123 446.4 338 67.5
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 2.5e-123 446.0 335 67.5
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 3.2e-123 445.7 310 71.9
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 7.2e-123 444.5 275 79.3
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.2e-122 443.7 313 72.2
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.7e-122 442.6 319 71.5
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 7.9e-122 441.0 289 75.1
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.4e-121 440.3 283 75.3
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 2.3e-121 439.5 271 78.6
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 6.7e-121 438.0 333 66.4
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 6.7e-121 438.0 321 70.7
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 1.5e-120 436.8 273 78.4
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 5.7e-120 434.9 264 79.5
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 3.7e-119 432.2 275 77.1
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 6.3e-119 431.4 283 73.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 4.1e-118 428.7 301 70.4
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 4.1e-118 428.7 315 68.9
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 7.0e-118 427.9 319 69.3
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.6e-117 426.8 311 69.5
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.0e-116 424.1 280 72.5
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 8.5e-116 421.0 331 66.8
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.1e-115 420.6 325 67.1
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.6e-114 416.8 319 70.5
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 6.7e-113 411.4 311 66.2
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.0e-112 409.8 322 65.8
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 4.8e-111 405.2 270 74.4
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.1e-110 404.1 302 67.5
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 2.4e-110 402.9 303 64.7
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.7e-108 396.7 306 66.3
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 2.2e-108 396.4 296 67.6
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 8.5e-108 394.4 274 69.7
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 3.2e-107 392.5 285 69.1
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.2e-107 391.3 291 70.1
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 7.2e-107 391.3 278 71.2
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 3.4e-104 382.5 319 60.2
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.0e-100 370.9 224 78.6
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.7e-95 353.6 276 62.3
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.7e-95 353.6 274 60.6
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.7e-92 343.6 305 55.4
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 5.2e-89 332.0 185 87.0
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 7.5e-88 328.2 238 72.7
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 9.5e-83 311.2 317 53.9
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 8.9e-81 304.7 226 69.0
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.5e-80 303.9 242 66.9
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 5.8e-80 302.0 274 52.2
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.4e-78 296.6 323 49.5
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 3.0e-76 289.7 288 54.2
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.6e-69 267.3 239 62.8
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 3.3e-67 259.6 217 65.4
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 6.2e-66 255.4 174 76.4
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.1e-62 244.6 220 62.3
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 8.1e-58 228.4 158 72.8
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 4.4e-56 222.6 122 87.7
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 1.3e-55 221.1 253 52.6
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 2.5e-51 206.8 160 62.5
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 3.1e-49 199.9 175 59.4
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.0e-44 183.3 185 54.1
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 8.4e-39 165.2 89 89.9
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 7.1e-38 162.2 137 62.8
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 5.3e-33 146.0 76 90.8
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 5.5e-30 136.0 283 31.8
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.8e-28 131.0 80 81.2
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 4.3e-27 126.3 89 68.5
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 4.3e-27 126.3 152 50.7
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.4e-25 120.6 68 86.8
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.8e-23 113.2 163 43.6
QL06p036545 Quercus lobata HOM05D001237 ORTHO05D050623 8.5e-23 112.1 74 79.7
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 5.1e-20 102.8 66 81.8
QL05p043656 Quercus lobata HOM05D004037 ORTHO05D050623 2.2e-18 97.4 55 89.1
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.0e-16 90.9 83 57.8
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 3.7e-10 70.1 181 29.3
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 4.8e-10 69.7 81 48.1
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 1.4e-06 58.2 59 45.8
Nn1g07592 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.2e-06 55.8 30 90.0


User provided reference genes

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