Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 2.9e-89 332.4 241 100.0
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 2.7e-79 299.3 306 69.3
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 1.1e-16 91.3 137 82.5
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 1.6e-15 87.4 147 72.8
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 3.6e-15 86.3 137 83.9
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 4.7e-15 85.9 138 89.1
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 8.0e-15 85.1 137 78.1
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 8.0e-15 85.1 137 85.4
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.3e-14 83.6 137 65.7
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 3.0e-14 83.2 137 84.7
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 3.0e-14 83.2 137 75.9
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 4.0e-14 82.8 138 76.1
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 4.0e-14 82.8 137 81.0
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 5.2e-14 82.4 137 65.0
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 6.7e-14 82.0 137 73.7
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.5e-13 80.9 45 88.9
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 1.5e-13 80.9 137 74.5
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 3.3e-13 79.7 45 88.9
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 5.7e-13 79.0 137 76.6
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 5.7e-13 79.0 45 86.7
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 5.7e-13 79.0 45 86.7
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 5.7e-13 79.0 137 78.1
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 5.7e-13 79.0 137 83.9
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 5.7e-13 79.0 137 80.3
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 5.7e-13 79.0 45 86.7
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 7.5e-13 78.6 45 86.7
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 7.5e-13 78.6 45 86.7
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 7.5e-13 78.6 45 86.7
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 9.7e-13 78.2 138 76.1
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 9.7e-13 78.2 46 84.8
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 9.7e-13 78.2 137 81.8
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 1.3e-12 77.8 45 84.4
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 1.3e-12 77.8 45 84.4
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 1.3e-12 77.8 45 84.4
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.7e-12 77.4 45 86.7
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.7e-12 77.4 45 86.7
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 1.7e-12 77.4 45 86.7
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 2.2e-12 77.0 142 79.6
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 2.8e-12 76.6 137 82.5
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 2.8e-12 76.6 45 82.2
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 2.8e-12 76.6 45 82.2
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 3.7e-12 76.3 45 84.4
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 3.7e-12 76.3 43 88.4
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 3.7e-12 76.3 138 84.1
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 3.7e-12 76.3 137 84.7
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 4.8e-12 75.9 43 88.4
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 4.8e-12 75.9 43 88.4
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 4.8e-12 75.9 43 88.4
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 8.2e-12 75.1 45 82.2
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 8.2e-12 75.1 45 82.2
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 8.2e-12 75.1 137 73.0
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 8.2e-12 75.1 43 86.0
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 8.2e-12 75.1 43 86.0
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.1e-11 74.7 45 82.2
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 1.1e-11 74.7 137 70.1
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 1.1e-11 74.7 132 77.3
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.4e-11 74.3 137 71.5
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 1.4e-11 74.3 45 77.8
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 1.4e-11 74.3 137 80.3
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 1.8e-11 73.9 45 80.0
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 1.8e-11 73.9 137 83.2
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 3.1e-11 73.2 137 85.4
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 3.1e-11 73.2 45 86.7
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 3.1e-11 73.2 45 80.0
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 4.1e-11 72.8 43 81.4
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 4.1e-11 72.8 42 85.7
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 4.1e-11 72.8 137 62.8
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 4.1e-11 72.8 45 80.0
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 5.3e-11 72.4 142 75.4
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 5.3e-11 72.4 137 71.5
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 7.0e-11 72.0 43 83.7
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 7.0e-11 72.0 45 77.8
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 7.0e-11 72.0 45 77.8
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 7.0e-11 72.0 43 83.7
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 9.1e-11 71.6 43 83.7
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 1.2e-10 71.2 45 77.8
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 1.2e-10 71.2 43 81.4
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.6e-10 70.9 141 75.9
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 2.0e-10 70.5 137 65.0
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.0e-10 70.5 43 79.1
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 2.7e-10 70.1 43 79.1
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 2.7e-10 70.1 42 85.7
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 3.5e-10 69.7 137 68.6
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 5.9e-10 68.9 137 70.8
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 5.9e-10 68.9 175 41.7
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 5.9e-10 68.9 44 77.3
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 5.9e-10 68.9 136 82.4
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 7.7e-10 68.6 45 73.3
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 7.7e-10 68.6 43 76.7
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.0e-09 68.2 45 75.6
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 1.0e-09 68.2 44 77.3
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.0e-09 68.2 42 78.6
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.0e-09 68.2 42 78.6
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 1.0e-09 68.2 65 55.4
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.7e-09 67.4 40 82.5
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 2.2e-09 67.0 43 74.4
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 2.2e-09 67.0 43 74.4
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 2.2e-09 67.0 43 74.4
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 2.2e-09 67.0 43 74.4
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 2.2e-09 67.0 43 74.4
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 2.2e-09 67.0 41 80.5
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 2.2e-09 67.0 45 75.6
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 2.2e-09 67.0 45 75.6
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 2.2e-09 67.0 44 75.0
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 2.2e-09 67.0 44 75.0
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 2.2e-09 67.0 41 78.0
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 2.2e-09 67.0 40 82.5
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 2.9e-09 66.6 43 74.4
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 2.9e-09 66.6 41 78.0
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.9e-09 66.6 45 73.3
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.9e-09 66.6 43 76.7
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.8e-09 66.2 40 80.0
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.8e-09 66.2 40 80.0
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 3.8e-09 66.2 42 76.2
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 5.0e-09 65.9 43 72.1
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 5.0e-09 65.9 43 72.1
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 5.0e-09 65.9 43 72.1
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 5.0e-09 65.9 45 73.3
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 6.5e-09 65.5 43 72.1
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 6.5e-09 65.5 134 72.4
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 6.5e-09 65.5 40 77.5
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 8.5e-09 65.1 40 77.5
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 8.5e-09 65.1 40 77.5
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 8.5e-09 65.1 39 79.5
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 1.1e-08 64.7 137 63.5
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.5e-08 64.3 42 73.8
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 1.9e-08 63.9 43 69.8
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 1.9e-08 63.9 44 70.5
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 1.9e-08 63.9 43 69.8
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 1.9e-08 63.9 44 70.5
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 3.2e-08 63.2 43 69.8
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 4.2e-08 62.8 44 70.5
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 7.2e-08 62.0 41 78.0
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 7.2e-08 62.0 38 76.3
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 7.2e-08 62.0 38 76.3
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 9.4e-08 61.6 43 72.1
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 9.4e-08 61.6 38 76.3
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.2e-07 61.2 138 56.5
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 1.4e-06 57.8 38 76.3
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 1.8e-06 57.4 40 67.5
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 1.8e-06 57.4 35 77.1
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 5.2e-06 55.8 39 69.2


User provided reference genes

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