Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 7.7e-148 527.3 306 100.0
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 2.2e-78 296.6 306 69.3
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 2.9e-22 110.2 202 56.9
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 3.7e-17 93.2 55 89.1
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 4.9e-17 92.8 65 78.5
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 1.1e-16 91.7 59 84.7
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 9.1e-16 88.6 70 64.3
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.2e-15 88.2 61 75.4
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 3.5e-15 86.7 63 71.4
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 4.5e-15 86.3 59 79.7
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 4.5e-15 86.3 56 80.4
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 5.9e-15 85.9 58 81.0
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 5.9e-15 85.9 58 81.0
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 5.9e-15 85.9 54 83.3
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.7e-14 84.3 48 89.6
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 2.9e-14 83.6 58 77.6
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 8.6e-14 82.0 53 83.0
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 1.9e-13 80.9 48 87.5
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.9e-13 80.9 48 87.5
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 1.9e-13 80.9 52 80.8
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.9e-13 80.9 50 86.0
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.9e-13 80.9 50 86.0
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 1.9e-13 80.9 50 86.0
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 1.9e-13 80.9 58 74.1
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.9e-13 80.9 52 82.7
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 1.9e-13 80.9 50 84.0
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 1.9e-13 80.9 51 82.4
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 3.3e-13 80.1 55 76.4
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 4.2e-13 79.7 56 78.6
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 4.2e-13 79.7 56 78.6
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 4.2e-13 79.7 50 84.0
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 4.2e-13 79.7 48 85.4
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 4.2e-13 79.7 204 52.9
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 5.5e-13 79.3 51 82.4
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 5.5e-13 79.3 61 68.9
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 7.2e-13 79.0 49 83.7
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.5e-13 78.6 65 72.3
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 9.5e-13 78.6 50 84.0
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 9.5e-13 78.6 45 88.9
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.2e-12 78.2 55 80.0
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.2e-12 78.2 49 81.6
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 1.2e-12 78.2 51 80.4
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 1.2e-12 78.2 51 84.3
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 1.2e-12 78.2 57 75.4
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 2.1e-12 77.4 48 83.3
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 2.1e-12 77.4 48 83.3
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 2.8e-12 77.0 59 71.2
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.6e-12 76.6 54 79.6
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 3.6e-12 76.6 62 69.4
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 3.6e-12 76.6 45 86.7
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 4.7e-12 76.3 48 81.2
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 4.7e-12 76.3 48 81.2
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 4.7e-12 76.3 49 83.7
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 8.0e-12 75.5 50 78.0
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 8.0e-12 75.5 45 84.4
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 8.0e-12 75.5 48 81.2
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.8e-11 74.3 48 79.2
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.8e-11 74.3 46 84.8
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 1.8e-11 74.3 45 82.2
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 2.3e-11 73.9 50 80.0
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 2.3e-11 73.9 43 88.4
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.0e-11 73.6 43 88.4
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 3.0e-11 73.6 43 88.4
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 5.2e-11 72.8 42 90.5
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 5.2e-11 72.8 78 60.3
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 5.2e-11 72.8 43 86.0
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 6.8e-11 72.4 48 79.2
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 8.9e-11 72.0 47 78.7
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 1.2e-10 71.6 52 78.8
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 1.2e-10 71.6 47 78.7
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 1.5e-10 71.2 52 75.0
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 2.0e-10 70.9 48 77.1
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 2.6e-10 70.5 51 72.5
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 3.4e-10 70.1 52 76.9
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 4.4e-10 69.7 43 83.7
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 5.7e-10 69.3 48 75.0
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 9.8e-10 68.6 55 69.1
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 1.3e-09 68.2 39 84.6
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 1.3e-09 68.2 47 76.6
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 1.3e-09 68.2 42 85.7
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.3e-09 68.2 43 79.1
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 2.9e-09 67.0 203 50.7
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 2.9e-09 67.0 44 77.3
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 3.7e-09 66.6 47 76.6
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 3.7e-09 66.6 55 67.3
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 3.7e-09 66.6 55 67.3
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.7e-09 66.6 50 72.0
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 3.7e-09 66.6 47 74.5
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 3.7e-09 66.6 65 55.4
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 4.9e-09 66.2 52 69.2
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 4.9e-09 66.2 42 78.6
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 4.9e-09 66.2 42 78.6
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 4.9e-09 66.2 46 73.9
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 4.9e-09 66.2 46 73.9
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 4.9e-09 66.2 43 76.7
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 6.3e-09 65.9 40 82.5
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 6.3e-09 65.9 50 72.0
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 6.3e-09 65.9 41 80.5
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 6.3e-09 65.9 41 78.0
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 6.3e-09 65.9 47 76.6
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 6.3e-09 65.9 43 76.7
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 8.3e-09 65.5 41 78.0
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 8.3e-09 65.5 43 76.7
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 8.3e-09 65.5 50 72.0
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 8.3e-09 65.5 46 73.9
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 8.3e-09 65.5 40 82.5
Lalb_Chr23g0275001 Lupinus albus HOM05D004131 ORTHO05D004778 1.1e-08 65.1 58 63.8
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-08 64.7 43 74.4
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-08 64.7 43 74.4
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 1.4e-08 64.7 43 74.4
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.4e-08 64.7 40 80.0
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.4e-08 64.7 40 80.0
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.8e-08 64.3 50 70.0
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.8e-08 64.3 43 74.4
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 1.8e-08 64.3 43 74.4
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.8e-08 64.3 43 74.4
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.8e-08 64.3 42 76.2
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 2.4e-08 63.9 66 56.1
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 2.4e-08 63.9 40 77.5
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 2.4e-08 63.9 39 79.5
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 3.2e-08 63.5 43 72.1
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.2e-08 63.5 40 77.5
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.2e-08 63.5 40 77.5
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 4.1e-08 63.2 54 64.8
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 4.1e-08 63.2 49 69.4
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 7.0e-08 62.4 54 64.8
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 7.0e-08 62.4 70 54.3
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 7.0e-08 62.4 42 73.8
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 1.2e-07 61.6 82 46.3
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 1.2e-07 61.6 63 58.7
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 1.6e-07 61.2 44 70.5
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 1.6e-07 61.2 46 69.6
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 1.6e-07 61.2 44 70.5
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.6e-07 61.2 39 79.5
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.6e-07 61.2 38 76.3
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.6e-07 61.2 38 76.3
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 2.0e-07 60.8 43 69.8
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 2.0e-07 60.8 38 76.3
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 2.7e-07 60.5 40 75.0
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 2.9e-06 57.0 35 77.1
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 8.6e-06 55.5 53 58.5
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 8.6e-06 55.5 48 62.5


User provided reference genes

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