Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p058044 Quercus lobata HOM05D002789 ORTHO05D337554 2.1e-54 215.3 99 100.0
Cfa016654 Carpinus fangiana HOM05D002789 ORTHO05D003185 8.3e-19 97.1 81 59.3
QL07p037999 Quercus lobata HOM05D002789 ORTHO05D003185 1.1e-18 96.7 81 58.0
CiPaw.10G013400 Carya illinoinensis HOM05D002789 ORTHO05D003185 2.4e-18 95.5 81 60.5
Haze_19664 Corylus avellana HOM05D002789 ORTHO05D003185 2.4e-18 95.5 81 56.8
QL93p1999_0039 Quercus lobata HOM05D002789 ORTHO05D003185 2.4e-18 95.5 81 58.0
CANSAT64G1713 Cannabis sativa HOM05D002789 ORTHO05D003185 8.6e-16 87.0 82 52.4
MBI17_g11951_MAGBIO Magnolia biondii HOM05D002789 ORTHO05D003185 1.9e-15 85.9 67 59.7
COL.COLO4_29655 Corchorus olitorius HOM05D002789 ORTHO05D003185 2.5e-15 85.5 81 50.6
Duzib093G0355 Durio zibethinus HOM05D002789 ORTHO05D003185 4.3e-15 84.7 81 53.1
Eucgr.B01705 Eucalyptus grandis HOM05D002789 ORTHO05D003185 5.6e-15 84.3 67 58.2
Eucgr.L02100 Eucalyptus grandis HOM05D002789 ORTHO05D003185 5.6e-15 84.3 67 58.2
Eucgr.J00529 Eucalyptus grandis HOM05D002789 ORTHO05D003185 7.3e-15 84.0 67 58.2
Peaxi162Scf00224g00516 Petunia axillaris HOM05D002789 ORTHO05D003185 7.3e-15 84.0 67 59.7
Solyc11g068730.2 Solanum lycopersicum HOM05D002789 ORTHO05D003185 7.3e-15 84.0 67 58.2
Sopen11g027440 Solanum pennellii HOM05D002789 ORTHO05D003185 7.3e-15 84.0 67 58.2
PGSC0003DMG400026329 Solanum tuberosum HOM05D002789 ORTHO05D003185 7.3e-15 84.0 67 58.2
Ah.08g223190 Amaranthus hybridus HOM05D002789 ORTHO05D003185 1.2e-14 83.2 67 58.2
MBI17_g34508_MAGBIO Magnolia biondii HOM05D002789 ORTHO05D003185 1.2e-14 83.2 65 58.5
QL01p011767 Quercus lobata HOM05D002789 ORTHO05D003185 1.2e-14 83.2 67 58.2
CAN.G745.22 Capsicum annuum HOM05D002789 ORTHO05D003185 1.6e-14 82.8 67 56.7
AUR62001530 Chenopodium quinoa HOM05D002789 ORTHO05D003185 1.6e-14 82.8 76 52.6
AUR62020252 Chenopodium quinoa HOM05D002789 ORTHO05D003185 1.6e-14 82.8 76 52.6
unitig_0.g1471 Utricularia gibba HOM05D002789 ORTHO05D003185 1.6e-14 82.8 67 58.2
Cfa009980 Carpinus fangiana HOM05D002789 ORTHO05D003185 2.1e-14 82.4 67 56.7
Haze_23339 Corylus avellana HOM05D002789 ORTHO05D003185 2.1e-14 82.4 67 56.7
Oeu031467.1 Olea europaea HOM05D002789 ORTHO05D003185 2.1e-14 82.4 67 58.2
Phvul.011G096700 Phaseolus vulgaris HOM05D002789 ORTHO05D003185 2.1e-14 82.4 67 56.7
Thecc.05G099000 Theobroma cacao HOM05D002789 ORTHO05D003185 2.1e-14 82.4 67 59.7
VMungo1127G1590 Vigna mungo HOM05D002789 ORTHO05D003185 2.1e-14 82.4 67 56.7
Nitab4.5_0001135g0040 Nicotiana tabacum HOM05D002789 ORTHO05D003185 2.8e-14 82.0 67 56.7
Potri.006G207700 Populus trichocarpa HOM05D002789 ORTHO05D003185 2.8e-14 82.0 81 54.3
CANSAT25G2714 Cannabis sativa HOM05D002789 ORTHO05D003185 3.6e-14 81.6 67 55.2
CiPaw.13G132500 Carya illinoinensis HOM05D002789 ORTHO05D003185 3.6e-14 81.6 67 56.7
Dinv22806 Davidia involucrata HOM05D002789 ORTHO05D003185 3.6e-14 81.6 67 55.2
ECA240G0368 Erigeron canadensis HOM05D002789 ORTHO05D003185 3.6e-14 81.6 67 55.2
Glyma.11G180900 Glycine max HOM05D002789 ORTHO05D003185 3.6e-14 81.6 67 55.2
Lj3g0013127 Lotus japonicus HOM05D002789 ORTHO05D003185 3.6e-14 81.6 67 56.7
Lj3g0016839 Lotus japonicus HOM05D002789 ORTHO05D003185 3.6e-14 81.6 67 56.7
PGR119G2521 Punica granatum HOM05D002789 ORTHO05D003185 3.6e-14 81.6 67 55.2
QL01p011774 Quercus lobata HOM05D002789 ORTHO05D003185 3.6e-14 81.6 67 56.7
Hund18781 Selenicereus undatus HOM05D002789 ORTHO05D003185 3.6e-14 81.6 67 56.7
TWI77G0963 Tripterygium wilfordii HOM05D002789 ORTHO05D003185 3.6e-14 81.6 65 55.4
Lj2A971G34 Lonicera japonica HOM05D002789 ORTHO05D003185 4.7e-14 81.3 67 55.2
Lalb_Chr03g0028301 Lupinus albus HOM05D002789 ORTHO05D003185 4.7e-14 81.3 67 55.2
Ciclev10028755m.g Citrus clementina HOM05D002789 ORTHO05D003185 6.2e-14 80.9 67 58.2
Lsat_1_v5_gn_3_117240 Lactuca sativa HOM05D002789 ORTHO05D003185 6.2e-14 80.9 67 56.7
TPR.G17206 Trifolium pratense HOM05D002789 ORTHO05D003185 6.2e-14 80.9 67 55.2
Ciclev10020864m.g Citrus clementina HOM05D002789 ORTHO05D003185 8.1e-14 80.5 67 55.2
Dinv22808 Davidia involucrata HOM05D002789 ORTHO05D003185 8.1e-14 80.5 65 55.4
Medtr4g052390 Medicago truncatula HOM05D002789 ORTHO05D003185 8.1e-14 80.5 67 55.2
FAN16G3412 Fragaria x ananassa HOM05D002789 ORTHO05D003185 1.1e-13 80.1 67 55.2
FAN21G3754 Fragaria x ananassa HOM05D002789 ORTHO05D003185 1.1e-13 80.1 67 55.2
Gohir.A07G111450 Gossypium hirsutum HOM05D002789 ORTHO05D003185 1.1e-13 80.1 67 53.7
Gorai.001G123400 Gossypium raimondii HOM05D002789 ORTHO05D003185 1.1e-13 80.1 67 53.7
Psat7g186680 Pisum sativum HOM05D002789 ORTHO05D003185 1.1e-13 80.1 67 53.7
Prupe.6G137600 Prunus persica HOM05D002789 ORTHO05D003185 1.1e-13 80.1 67 53.7
RcHm_v2.0_Chr5g0047031 Rosa chinensis HOM05D002789 ORTHO05D003185 1.1e-13 80.1 67 55.2
Actinidia37069 Actinidia chinensis HOM05D002789 ORTHO05D003185 1.4e-13 79.7 67 53.7
ATR0081G064 Amborella trichopoda HOM05D002789 ORTHO05D003185 1.4e-13 79.7 67 56.7
Duzib150G0663 Durio zibethinus HOM05D002789 ORTHO05D003185 1.4e-13 79.7 67 52.2
Duzib168G1289 Durio zibethinus HOM05D002789 ORTHO05D003185 1.4e-13 79.7 67 53.7
Glyma.12G092300 Glycine max HOM05D002789 ORTHO05D003185 1.4e-13 79.7 67 55.2
QL01p011757 Quercus lobata HOM05D002789 ORTHO05D003185 1.4e-13 79.7 67 56.7
Rhsim01G0202900 Rhododendron simsii HOM05D002789 ORTHO05D003185 1.4e-13 79.7 67 55.2
Sed0027695 Sechium edule HOM05D002789 ORTHO05D003185 1.4e-13 79.7 67 55.2
FvH4_3g25810 Fragaria vesca HOM05D002789 ORTHO05D003185 1.8e-13 79.3 67 55.2
FAN11G3565 Fragaria x ananassa HOM05D002789 ORTHO05D003185 1.8e-13 79.3 67 55.2
MSTRG.21025 Avicennia marina HOM05D002789 ORTHO05D003185 2.3e-13 79.0 67 56.7
Cc01_g08760 Coffea canephora HOM05D002789 ORTHO05D003185 2.3e-13 79.0 67 55.2
FAN25G2876 Fragaria x ananassa HOM05D002789 ORTHO05D003185 2.3e-13 79.0 67 53.7
Gohir.D07G115200 Gossypium hirsutum HOM05D002789 ORTHO05D003185 2.3e-13 79.0 67 53.7
Prupe.7G100200 Prunus persica HOM05D002789 ORTHO05D003185 2.3e-13 79.0 81 50.6
Hund18782 Selenicereus undatus HOM05D002789 ORTHO05D003185 2.3e-13 79.0 67 56.7
CDE04G3244 Ceratophyllum demersum HOM05D002789 ORTHO05D003185 3.1e-13 78.6 67 59.7
TWI79G0289 Tripterygium wilfordii HOM05D002789 ORTHO05D003185 3.1e-13 78.6 67 52.2
Atru.chr3.3159 Acer truncatum HOM05D002789 ORTHO05D003185 4.0e-13 78.2 67 52.2
arahy.Tifrunner.gnm1.ann1.JG5ZXS Arachis hypogaea HOM05D002789 ORTHO05D003185 4.0e-13 78.2 67 55.2
EL10Ac7g16327 Beta vulgaris HOM05D002789 ORTHO05D003185 4.0e-13 78.2 67 52.2
ClCG01G011750 Citrullus lanatus HOM05D002789 ORTHO05D003185 4.0e-13 78.2 67 53.7
Nn2g15500 Nelumbo nucifera HOM05D002789 ORTHO05D003185 4.0e-13 78.2 67 56.7
Nitab4.5_0003516g0030 Nicotiana tabacum HOM05D002789 ORTHO05D003185 4.0e-13 78.2 67 56.7
THA.LOC104810929 Tarenaya hassleriana HOM05D002789 ORTHO05D003185 4.0e-13 78.2 67 55.2
Thecc.09G277600 Theobroma cacao HOM05D002789 ORTHO05D003185 4.0e-13 78.2 67 52.2
ATR0772G120 Amborella trichopoda HOM05D002789 ORTHO05D003185 5.2e-13 77.8 67 55.2
CSS0027967 Camellia sinensis var. sinensis HOM05D002789 ORTHO05D003185 5.2e-13 77.8 67 55.2
CSS0031098 Camellia sinensis var. sinensis HOM05D002789 ORTHO05D003185 5.2e-13 77.8 67 55.2
Gohir.D04G096000 Gossypium hirsutum HOM05D002789 ORTHO05D003185 5.2e-13 77.8 81 50.6
Gorai.009G398700 Gossypium raimondii HOM05D002789 ORTHO05D003185 5.2e-13 77.8 81 50.6
PSO339G2264 Papaver somniferum HOM05D002789 ORTHO05D003185 5.2e-13 77.8 81 43.2
Potri.016G074200 Populus trichocarpa HOM05D002789 ORTHO05D003185 6.8e-13 77.4 81 51.9
TAR633G2341 Trochodendron aralioides HOM05D002789 ORTHO05D003185 6.8e-13 77.4 67 52.2
Aqoxy4G02708 Aquilegia oxysepala HOM05D002789 ORTHO05D003185 8.9e-13 77.0 67 55.2
arahy.Tifrunner.gnm1.ann1.FY23RQ Arachis hypogaea HOM05D002789 ORTHO05D003185 8.9e-13 77.0 67 53.7
MELO3C025585.2 Cucumis melo HOM05D002789 ORTHO05D003185 8.9e-13 77.0 67 52.2
CsaV3_1G015110 Cucumis sativus L. HOM05D002789 ORTHO05D003185 8.9e-13 77.0 67 52.2
Duzib170G0571 Durio zibethinus HOM05D002789 ORTHO05D003185 8.9e-13 77.0 64 53.1
PSO384G4067 Papaver somniferum HOM05D002789 ORTHO05D003185 8.9e-13 77.0 65 50.8
vmacro14336 Vaccinium macrocarpon HOM05D002789 ORTHO05D003185 8.9e-13 77.0 67 52.2
Ca_19445_v3 Cicer arietinum L. HOM05D002789 ORTHO05D003185 1.2e-12 76.6 67 50.7
Migut.D02426 Erythranthe guttata HOM05D002789 ORTHO05D003185 1.2e-12 76.6 67 55.2
HanXRQChr13g0420411 Helianthus annuus HOM05D002789 ORTHO05D003185 1.2e-12 76.6 67 52.2
SalBow6G4975 Salvia bowleyana HOM05D002789 ORTHO05D003185 1.2e-12 76.6 67 50.7
Cpa.g.sc195.34 Carica papaya HOM05D002789 ORTHO05D003185 1.5e-12 76.3 67 53.7
CiPaw.13G132600 Carya illinoinensis HOM05D002789 ORTHO05D003185 1.5e-12 76.3 67 55.2
Sp6g22940 Schrenkiella parvula HOM05D002789 ORTHO05D003185 1.5e-12 76.3 67 56.7
TAR633G2089 Trochodendron aralioides HOM05D002789 ORTHO05D003185 1.5e-12 76.3 67 53.7
GSVIVG01036075001 Vitis vinifera HOM05D002789 ORTHO05D003185 1.5e-12 76.3 67 56.7
HanXRQChr03g0091481 Helianthus annuus HOM05D002789 ORTHO05D003185 2.0e-12 75.9 68 52.9
Aa31LG1G13250 Aethionema arabicum HOM05D002789 ORTHO05D003185 2.6e-12 75.5 67 53.7
Manes.04G000700 Manihot esculenta HOM05D002789 ORTHO05D003185 2.6e-12 75.5 67 53.7
TWI75G0194 Tripterygium wilfordii HOM05D002789 ORTHO05D003185 2.6e-12 75.5 67 52.2
Nn2g14241 Nelumbo nucifera HOM05D002789 ORTHO05D003185 3.4e-12 75.1 81 45.7
Nitab4.5_0001135g0050 Nicotiana tabacum HOM05D002789 ORTHO05D003185 3.4e-12 75.1 79 48.1
Sabra16G0076800 Salix brachista HOM05D002789 ORTHO05D003185 3.4e-12 75.1 81 49.4
Sabra16G0079900 Salix brachista HOM05D002789 ORTHO05D003185 3.4e-12 75.1 81 49.4
AL6G33310 Arabidopsis lyrata HOM05D002789 ORTHO05D003185 4.4e-12 74.7 67 53.7
CARHR191250 Cardamine hirsuta HOM05D002789 ORTHO05D003185 4.4e-12 74.7 67 55.2
PSO339G2912 Papaver somniferum HOM05D002789 ORTHO05D003185 4.4e-12 74.7 69 55.1
Thhalv10013949m.g Eutrema salsugineum HOM05D002789 ORTHO05D003185 7.5e-12 73.9 67 52.2
Potri.004G199600 Populus trichocarpa HOM05D002789 ORTHO05D003185 7.5e-12 73.9 67 52.2
Carub.0006s2004 Capsella rubella HOM05D002789 ORTHO05D003185 1.3e-11 73.2 67 52.2
PSO384G1444 Papaver somniferum HOM05D002789 ORTHO05D003185 1.3e-11 73.2 69 55.1
Sabra04G0134800 Salix brachista HOM05D002789 ORTHO05D003185 1.3e-11 73.2 67 50.7
Sc12g0004710 Simmondsia chinensis HOM05D002789 ORTHO05D003185 1.3e-11 73.2 81 42.0
HPP92_012650 Vanilla planifolia HOM05D002789 ORTHO05D003185 1.3e-11 73.2 67 53.7
AT5G22300 Arabidopsis thaliana HOM05D002789 ORTHO05D003185 1.7e-11 72.8 67 52.2
CDE07G0890 Ceratophyllum demersum HOM05D002789 ORTHO05D003185 1.7e-11 72.8 67 56.7
Manes.11G164700 Manihot esculenta HOM05D002789 ORTHO05D003185 1.7e-11 72.8 67 53.7
BcaB05g22734 Brassica carinata HOM05D002789 ORTHO05D003185 2.2e-11 72.4 67 53.7
BcaC03g13874 Brassica carinata HOM05D002789 ORTHO05D003185 2.2e-11 72.4 67 53.7
BNapus_Darmor_BZH_scaffold_38p00740 Brassica napus HOM05D002789 ORTHO05D003185 2.2e-11 72.4 67 53.7
C02p10810 Brassica napus HOM05D002789 ORTHO05D003185 2.2e-11 72.4 67 53.7
BolC2t07149H Brassica oleracea HOM05D002789 ORTHO05D003185 2.2e-11 72.4 67 53.7
BraA02t05651Z Brassica rapa HOM05D002789 ORTHO05D003185 2.2e-11 72.4 67 53.7
Lj3g0020064 Lotus japonicus HOM05D002789 ORTHO05D003185 2.2e-11 72.4 67 52.2
Os02g0635200 Oryza sativa ssp. japonica HOM05D002789 ORTHO05D003185 2.9e-11 72.0 64 54.7
Aqoxy2G01042 Aquilegia oxysepala HOM05D002789 ORTHO05D003185 3.7e-11 71.6 81 45.7
MD03G1150700 Malus domestica HOM05D002789 ORTHO05D003185 3.7e-11 71.6 67 53.7
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 3.7e-11 71.6 67 49.3
Mapoly0069s0046 Marchantia polymorpha HOM05D002789 ORTHO05D003185 6.4e-11 70.9 68 54.4
Nitab4.5_0003516g0040 Nicotiana tabacum HOM05D002789 ORTHO05D003185 6.4e-11 70.9 67 52.2
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.1e-10 70.1 67 55.2
vmacro14337 Vaccinium macrocarpon HOM05D002789 ORTHO05D003185 1.1e-10 70.1 68 52.9
Nn6g34793 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.4e-10 69.7 65 46.2
Sc06g0007140 Simmondsia chinensis HOM05D002789 ORTHO05D003185 1.4e-10 69.7 68 47.1
Cpa.g.sc104.84 Carica papaya HOM05D002789 ORTHO05D003185 3.2e-10 68.6 81 48.1
Manes.09G051000 Manihot esculenta HOM05D002789 ORTHO05D003185 3.2e-10 68.6 81 46.9
Sc06g0007130 Simmondsia chinensis HOM05D002789 ORTHO05D003185 3.2e-10 68.6 62 56.5
Medtr4g052380 Medicago truncatula HOM05D002789 ORTHO05D003185 5.4e-10 67.8 61 52.5
Os02g0635000 Oryza sativa ssp. japonica HOM05D002789 ORTHO05D003185 7.1e-10 67.4 61 54.1
SMO114G0037 Selaginella moellendorffii HOM05D002789 ORTHO05D003185 7.1e-10 67.4 67 49.3
Pp3c21_15520 Physcomitrium patens HOM05D002789 ORTHO05D003185 9.2e-10 67.0 68 52.9
Zm00001eb185550 Zea mays HOM05D002789 ORTHO05D003185 1.2e-09 66.6 61 54.1
GSVIVG01036073001 Vitis vinifera HOM05D002789 ORTHO05D003185 2.1e-09 65.9 57 56.1
Eucgr.J00530 Eucalyptus grandis HOM05D002789 ORTHO05D003185 2.7e-09 65.5 61 49.2
SGA_v2.0_scaffold7G03993 Striga asiatica HOM05D002789 ORTHO05D003185 2.7e-09 65.5 61 45.9
Mapoly0150s0021 Marchantia polymorpha HOM05D002789 ORTHO05D003185 6.0e-09 64.3 67 52.2
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 7.8e-09 63.9 60 56.7
Zm00001eb248290 Zea mays HOM05D002789 ORTHO05D003185 1.3e-08 63.2 61 54.1
Nitab4.5_0004370g0060 Nicotiana tabacum HOM05D002789 ORTHO05D003185 3.0e-08 62.0 55 50.9
PGR119G0094 Punica granatum HOM05D002789 ORTHO05D003185 3.0e-08 62.0 62 51.6
GSVIVG01022690001 Vitis vinifera HOM05D002789 ORTHO05D003185 1.5e-07 59.7 68 42.6
Sp5g16960 Schrenkiella parvula HOM05D002789 ORTHO05D003185 3.3e-07 58.5 67 47.8
GSVIVG01011519001 Vitis vinifera HOM05D002789 ORTHO05D003185 3.3e-07 58.5 67 41.8
GSVIVG01022705001 Vitis vinifera HOM05D002789 ORTHO05D003185 4.3e-07 58.2 67 43.3
GSVIVG01022720001 Vitis vinifera HOM05D002789 ORTHO05D003185 4.3e-07 58.2 67 43.3
SalBow3G2689 Salvia bowleyana HOM05D002789 ORTHO05D003185 7.3e-07 57.4 67 41.8
GSVIVG01022699001 Vitis vinifera HOM05D002789 ORTHO05D003185 7.3e-07 57.4 67 41.8
GSVIVG01022702001 Vitis vinifera HOM05D002789 ORTHO05D003185 7.3e-07 57.4 67 41.8
GSVIVG01022712001 Vitis vinifera HOM05D002789 ORTHO05D003185 7.3e-07 57.4 67 41.8
GSVIVG01022714001 Vitis vinifera HOM05D002789 ORTHO05D003185 7.3e-07 57.4 67 41.8
GSVIVG01022715001 Vitis vinifera HOM05D002789 ORTHO05D003185 9.5e-07 57.0 67 43.3
GSVIVG01022723001 Vitis vinifera HOM05D002789 ORTHO05D003185 9.5e-07 57.0 67 43.3
AL5G22460 Arabidopsis lyrata HOM05D002789 ORTHO05D003185 2.1e-06 55.8 62 46.8
AT3G44310 Arabidopsis thaliana HOM05D002789 ORTHO05D003185 2.1e-06 55.8 67 46.3
AT3G44320 Arabidopsis thaliana HOM05D002789 ORTHO05D003185 2.1e-06 55.8 62 46.8
AL5G22430 Arabidopsis lyrata HOM05D002789 ORTHO05D003185 2.8e-06 55.5 67 44.8
AL5G22450 Arabidopsis lyrata HOM05D002789 ORTHO05D003185 4.7e-06 54.7 67 44.8
AT3G44300 Arabidopsis thaliana HOM05D002789 ORTHO05D003185 4.7e-06 54.7 67 46.3
Carub.0007s2680 Capsella rubella HOM05D002789 ORTHO05D003185 4.7e-06 54.7 67 44.8
CARHR164570 Cardamine hirsuta HOM05D002789 ORTHO05D003185 4.7e-06 54.7 67 46.3
SalBow3G4101 Salvia bowleyana HOM05D002789 ORTHO05D003185 6.2e-06 54.3 64 43.8
Carub.0005s1003 Capsella rubella HOM05D002789 ORTHO05D003185 8.1e-06 53.9 62 45.2


User provided reference genes

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