Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 4.1e-212 741.1 372 100.0
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.5e-166 589.7 372 83.1
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.1e-147 526.2 371 74.4
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 1.1e-140 503.8 371 71.7
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.6e-139 500.0 371 69.8
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.6e-139 500.0 371 69.8
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 2.1e-139 499.6 371 71.2
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 3.6e-139 498.8 372 71.5
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 1.0e-138 497.3 371 70.1
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 1.4e-138 496.9 366 71.6
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 2.3e-138 496.1 371 70.1
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 3.9e-138 495.4 371 69.0
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 2.6e-137 492.7 371 69.0
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 3.3e-137 492.3 371 70.1
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 4.4e-137 491.9 371 69.5
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 5.7e-137 491.5 371 70.1
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 2.8e-136 489.2 283 85.5
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 4.8e-136 488.4 371 68.2
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 4.8e-136 488.4 371 69.5
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 8.2e-136 487.6 371 69.0
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.4e-135 486.9 371 69.0
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 3.1e-135 485.7 373 69.2
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 7.0e-135 484.6 371 68.7
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 1.2e-134 483.8 371 68.2
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 1.2e-134 483.8 372 69.4
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.6e-134 483.4 372 68.3
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.0e-134 483.0 302 80.8
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 7.7e-134 481.1 363 69.7
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.2e-133 479.6 373 68.1
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 2.9e-133 479.2 371 67.4
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 6.5e-133 478.0 388 67.0
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.1e-132 477.2 282 84.0
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.5e-132 476.9 376 67.3
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 1.9e-132 476.5 363 68.9
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 1.9e-132 476.5 372 66.9
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 5.5e-132 474.9 373 66.5
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 7.2e-132 474.6 363 69.1
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.6e-131 472.2 391 64.7
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 2.3e-130 469.5 371 67.4
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 2.3e-130 469.5 373 66.2
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 6.7e-130 468.0 282 82.3
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 8.8e-130 467.6 283 82.0
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.5e-129 466.8 281 82.6
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.5e-129 466.8 283 82.0
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 3.3e-129 465.7 406 64.0
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 5.7e-129 464.9 373 66.5
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.7e-128 463.4 283 80.6
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 2.2e-128 463.0 371 66.0
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.8e-128 462.6 371 66.0
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 2.8e-128 462.6 374 66.6
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 2.8e-128 462.6 333 73.0
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 4.8e-128 461.8 366 65.0
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 4.8e-128 461.8 373 65.4
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 8.2e-128 461.1 363 66.1
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 1.4e-127 460.3 283 80.9
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 5.3e-127 458.4 371 65.2
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 5.3e-127 458.4 283 80.6
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 7.0e-127 458.0 374 65.8
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 7.0e-127 458.0 283 79.2
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 7.0e-127 458.0 283 79.9
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 9.1e-127 457.6 373 64.9
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 1.2e-126 457.2 283 80.2
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 2.7e-126 456.1 301 76.7
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 3.5e-126 455.7 283 80.2
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 4.5e-126 455.3 283 77.4
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 5.9e-126 454.9 283 78.4
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.0e-125 454.1 283 77.4
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.3e-125 453.8 310 74.5
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 2.2e-125 453.0 376 64.4
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 8.5e-125 451.1 285 77.9
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 8.5e-125 451.1 373 65.4
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 1.1e-124 450.7 358 65.9
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 1.9e-124 449.9 284 77.8
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 4.2e-124 448.7 278 80.9
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 5.5e-124 448.4 367 62.7
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 7.2e-124 448.0 282 76.6
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 2.7e-123 446.0 283 75.6
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 2.3e-122 443.0 371 64.4
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 6.8e-122 441.4 320 70.6
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 1.2e-121 440.7 349 65.9
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 3.4e-121 439.1 357 65.3
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 5.7e-121 438.3 288 77.1
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 2.2e-120 436.4 283 74.6
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 3.1e-119 432.6 283 75.3
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 9.1e-119 431.0 283 73.5
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 2.0e-118 429.9 278 77.3
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.0e-117 427.6 283 73.1
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 1.3e-117 427.2 283 72.8
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 2.2e-117 426.4 283 73.1
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 3.2e-116 422.5 283 71.7
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 4.2e-116 422.2 283 72.4
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.6e-115 420.2 283 72.1
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 2.1e-115 419.9 249 84.7
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.0e-114 417.5 284 71.5
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 1.4e-114 417.2 281 71.9
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 1.8e-114 416.8 283 71.0
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 1.8e-114 416.8 284 71.8
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 2.3e-114 416.4 284 71.8
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 2.3e-114 416.4 284 71.8
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 6.8e-114 414.8 284 71.8
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 8.8e-114 414.5 284 70.8
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 4.4e-113 412.1 284 71.1
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 5.7e-113 411.8 286 67.5
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 4.1e-111 405.6 249 80.7
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 6.6e-109 398.3 284 69.7
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 7.3e-108 394.8 250 78.4
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 9.5e-108 394.4 249 79.5
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.4e-106 390.6 371 59.0
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 4.9e-104 382.1 279 69.9
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.3e-100 369.4 254 74.4
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 8.0e-99 364.8 374 55.6
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 8.9e-98 361.3 371 56.1
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.1e-95 352.4 254 71.7
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.7e-93 347.1 283 60.1
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 4.1e-87 325.9 226 73.0
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 7.1e-87 325.1 235 72.8
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 4.4e-81 305.8 181 82.9
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 7.3e-76 288.5 208 71.6
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 7.6e-73 278.5 190 74.7
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 5.4e-71 272.3 185 72.4
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 1.2e-70 271.2 320 46.6
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 2.0e-57 227.3 290 47.2
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 1.3e-56 224.6 189 66.1
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-55 220.7 142 77.5
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.4e-50 204.5 222 52.7
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-47 194.9 170 61.2
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.4e-47 194.5 146 71.2
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.4e-47 194.5 301 39.5
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 7.9e-38 162.2 111 75.7
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 1.3e-37 161.4 116 69.0
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 1.9e-36 157.5 100 78.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-29 135.2 90 76.7
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-25 121.7 176 43.8
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 2.9e-24 117.1 78 76.9
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 6.5e-24 115.9 84 73.8
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 4.2e-23 113.2 69 78.3
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 2.6e-20 104.0 72 75.0
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 1.0e-13 82.0 53 79.2
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-12 78.6 83 49.4
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 2.6e-12 77.4 56 67.9


User provided reference genes

Program Settings