Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 9.2e-268 926.8 643 100.0
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 2.8e-256 888.6 648 95.8
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 6.2e-232 807.7 648 84.9
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 3.5e-174 615.9 652 61.7
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.3e-152 544.3 662 57.4
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 6.2e-147 525.4 664 59.3
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 8.1e-131 471.9 667 47.1
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 1.4e-130 471.1 679 45.7
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.7e-128 464.2 689 50.8
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 4.6e-126 456.1 692 46.7
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 3.6e-123 446.4 693 47.6
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 8.1e-123 445.3 593 46.7
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 4.0e-122 443.0 621 51.2
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 6.8e-122 442.2 688 45.5
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 1.2e-121 441.4 689 50.2
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 3.4e-121 439.9 687 52.8
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 1.4e-119 434.5 618 45.6
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 2.4e-119 433.7 654 49.4
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 7.1e-119 432.2 655 45.0
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 3.5e-118 429.9 674 45.4
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 6.0e-118 429.1 646 45.7
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 7.3e-116 422.2 658 47.9
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 2.1e-115 420.6 689 45.4
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 8.1e-115 418.7 693 43.3
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 2.0e-113 414.1 651 48.2
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 2.2e-112 410.6 660 47.6
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.9e-112 410.2 653 45.6
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 6.4e-112 409.1 667 48.4
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 7.9e-110 402.1 644 44.1
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 3.9e-109 399.8 654 43.3
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 2.8e-107 393.7 675 43.6
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 4.8e-107 392.9 669 46.5
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.8e-106 391.0 657 46.4
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 6.9e-106 389.0 664 52.3
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 9.0e-106 388.7 646 48.1
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 3.4e-105 386.7 664 44.7
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.8e-105 386.0 646 45.4
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 1.7e-104 384.4 672 52.1
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 5.5e-103 379.4 656 46.8
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 1.6e-102 377.9 674 43.8
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.0e-101 373.6 452 52.7
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 1.1e-100 371.7 649 41.0
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 9.6e-100 368.6 710 46.1
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 8.1e-99 365.5 424 55.0
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.1e-98 365.2 658 44.2
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 1.3e-93 348.2 697 43.5
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 3.9e-93 346.7 700 44.0
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 6.3e-91 339.3 649 43.8
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 5.3e-90 336.3 691 42.3
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 2.0e-89 334.3 666 42.0
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 2.6e-89 334.0 696 41.1
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 3.4e-89 333.6 645 37.7
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.3e-88 331.6 650 38.0
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 2.9e-88 330.5 680 39.9
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 8.4e-88 328.9 655 44.1
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 1.4e-87 328.2 668 40.3
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.4e-87 328.2 652 48.0
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 4.2e-87 326.6 687 47.3
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.5e-87 326.2 649 47.1
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 2.7e-86 323.9 663 39.2
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 1.0e-85 322.0 700 42.9
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 2.3e-85 320.9 646 37.9
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.2e-83 314.3 696 40.2
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 1.4e-82 311.6 646 44.1
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 1.4e-82 311.6 648 46.6
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 3.1e-82 310.5 645 45.0
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 6.9e-82 309.3 616 43.5
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 6.9e-82 309.3 652 40.8
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 9.0e-82 308.9 692 40.2
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 2.2e-80 304.3 666 39.2
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 2.9e-80 303.9 653 47.6
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.5e-79 300.8 703 39.4
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 1.1e-76 292.0 649 41.9
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 7.4e-76 289.3 662 42.7
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 6.3e-75 286.2 673 49.0
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 8.2e-75 285.8 659 40.7
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 9.1e-74 282.3 634 39.4
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 1.7e-72 278.1 564 43.1
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 8.5e-72 275.8 646 40.7
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 8.5e-72 275.8 681 40.7
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 1.9e-71 274.6 538 44.4
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 1.6e-70 271.6 433 47.1
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 3.6e-70 270.4 667 48.7
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 1.8e-69 268.1 644 36.8
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 6.7e-69 266.2 564 41.3
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 1.5e-68 265.0 641 40.4
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 7.4e-68 262.7 342 50.3
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.8e-67 260.8 653 39.5
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 6.3e-67 259.6 429 47.6
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 2.0e-65 254.6 409 47.4
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.5e-65 253.8 643 40.0
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.9e-64 250.8 445 39.1
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 6.1e-62 243.0 559 41.5
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 6.3e-59 233.0 432 38.0
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 3.1e-58 230.7 441 44.0
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 7.0e-58 229.6 271 55.7
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 7.0e-58 229.6 661 31.2
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 2.7e-57 227.6 442 43.4
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 2.7e-57 227.6 442 43.2
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 5.9e-57 226.5 447 44.7
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.0e-56 225.7 442 43.2
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 8.5e-56 222.6 357 42.9
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 1.9e-55 221.5 437 40.3
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 2.3e-53 214.5 677 31.3
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 3.4e-52 210.7 713 36.0
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 9.1e-50 202.6 612 35.3
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 1.6e-46 191.8 671 32.3
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.3e-45 188.0 671 30.3
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.0e-45 187.6 435 38.4
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 2.0e-44 184.9 680 29.0
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.4e-44 184.1 672 29.8
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 4.1e-42 177.2 344 39.5
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 3.5e-33 147.5 225 41.3
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 1.7e-32 145.2 193 61.7
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 2.3e-29 134.8 570 31.4
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 3.1e-29 134.4 300 42.0
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 2.0e-25 121.7 628 32.6
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 8.6e-24 116.3 399 31.1
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 5.6e-23 113.6 204 44.6
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.1e-22 111.7 163 43.6
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 1.8e-21 108.6 162 48.8
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 2.9e-19 101.3 471 32.1
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 1.2e-17 95.9 409 29.6
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 3.5e-17 94.4 367 34.3
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 7.3e-15 86.7 106 52.8
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.8e-14 84.7 106 51.9
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 1.1e-13 82.8 105 49.5
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 2.3e-13 81.6 132 43.9
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.8e-12 77.0 106 47.2
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 1.1e-10 72.8 89 44.9
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 1.0e-08 66.2 103 39.8


User provided reference genes

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