Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 1.1e-125 453.4 228 100.0
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.5e-97 358.6 271 74.2
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.1e-63 247.3 227 63.0
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.1e-61 240.7 241 58.5
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 2.5e-58 229.6 298 49.7
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 6.7e-56 221.5 226 55.8
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 8.8e-56 221.1 227 58.6
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 3.3e-55 219.2 228 55.3
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.3e-54 217.2 233 56.2
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.1e-53 214.2 227 57.7
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.2e-52 210.7 222 56.3
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.2e-52 210.7 227 53.3
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.0e-52 209.9 242 52.5
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 3.5e-52 209.1 225 56.0
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 5.9e-52 208.4 175 64.6
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 7.7e-52 208.0 228 56.6
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.0e-51 207.6 228 57.0
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.2e-51 206.5 193 61.1
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.2e-51 206.5 228 54.8
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.5e-50 203.8 228 51.3
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.2e-49 200.7 234 52.1
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.2e-49 200.7 192 58.3
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 2.1e-49 199.9 233 51.9
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.7e-49 199.5 223 53.4
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.0e-48 197.6 229 52.8
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 5.2e-48 195.3 228 48.7
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 6.8e-48 194.9 222 53.6
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 6.8e-48 194.9 234 51.3
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 5.7e-47 191.8 232 52.2
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.7e-46 190.3 201 54.7
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 6.3e-46 188.3 154 65.6
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.1e-45 187.6 234 50.0
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.8e-45 186.8 229 52.8
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.8e-45 186.8 229 52.8
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 3.1e-45 186.0 235 49.8
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 9.1e-45 184.5 229 52.4
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 2.0e-44 183.3 187 55.1
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 5.9e-44 181.8 225 49.8
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 3.8e-43 179.1 156 62.2
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 5.0e-43 178.7 216 52.3
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 8.5e-43 177.9 156 59.6
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.5e-42 177.2 222 47.7
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.2e-42 175.6 181 55.2
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 5.5e-42 175.3 162 59.3
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 7.2e-42 174.9 187 52.4
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 9.4e-42 174.5 176 54.5
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 6.1e-41 171.8 156 57.7
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 3.0e-40 169.5 166 57.2
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.0e-39 166.8 202 52.0
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 3.4e-39 166.0 183 50.8
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 4.4e-39 165.6 157 59.9
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 7.5e-39 164.9 179 52.0
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.7e-38 163.7 180 54.4
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.7e-38 163.7 166 56.6
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 6.3e-38 161.8 165 55.2
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.1e-37 161.0 178 51.1
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.1e-37 161.0 133 65.4
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 1.4e-37 160.6 155 58.1
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 2.4e-37 159.8 155 55.5
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 9.1e-37 157.9 177 50.3
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 1.2e-36 157.5 177 50.3
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.6e-36 157.1 161 52.2
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 2.7e-36 156.4 181 50.3
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 4.5e-36 155.6 177 50.3
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 7.7e-36 154.8 177 49.7
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.3e-35 153.3 226 42.0
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 6.6e-35 151.8 155 54.2
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 8.6e-35 151.4 201 44.3
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 1.9e-34 150.2 172 50.0
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 5.5e-34 148.7 172 48.8
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.8e-32 143.7 148 52.7
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 4.4e-31 139.0 232 42.7
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 7.5e-31 138.3 164 47.6
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 9.8e-31 137.9 164 47.6
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 8.6e-27 124.8 149 45.0
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.6e-25 120.6 110 60.0
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.3e-24 116.7 189 38.6
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 6.8e-24 115.2 156 41.0
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 4.4e-23 112.5 76 72.4
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.7e-22 110.5 76 72.4
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.4e-21 106.7 135 51.1
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.5e-18 97.4 134 45.5
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 5.6e-18 95.5 135 44.4
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 9.5e-18 94.7 80 62.5
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 9.5e-18 94.7 175 31.4
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.2e-17 94.4 200 27.0
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.8e-17 93.2 80 61.2
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.8e-16 90.5 131 35.9
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.3e-16 90.1 130 36.9
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 5.2e-16 89.0 166 33.1
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.2e-15 87.8 185 29.2
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.5e-15 87.4 127 39.4
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.5e-15 87.4 183 31.1
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 2.0e-15 87.0 158 31.6
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 2.0e-15 87.0 163 31.9
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 3.4e-15 86.3 116 48.3
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 5.8e-15 85.5 175 32.6
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 5.8e-15 85.5 181 30.9
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 7.5e-15 85.1 179 31.3
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 7.5e-15 85.1 183 30.6
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 9.8e-15 84.7 180 31.7
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 9.8e-15 84.7 138 33.3
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 9.8e-15 84.7 138 33.3
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.3e-14 84.3 132 32.6
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.7e-14 84.0 164 26.2
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.7e-14 84.0 215 30.7
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.2e-14 83.6 194 29.4
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 2.2e-14 83.6 136 33.1
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 3.7e-14 82.8 133 33.1
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 3.7e-14 82.8 131 32.1
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 8.3e-14 81.6 142 33.1
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 8.3e-14 81.6 132 33.3
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 8.3e-14 81.6 133 36.1
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 8.3e-14 81.6 132 33.3
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 8.3e-14 81.6 187 26.2
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.1e-13 81.3 177 31.1
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.1e-13 81.3 134 35.8
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 1.1e-13 81.3 167 30.5
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.1e-13 81.3 170 30.6
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.9e-13 80.5 132 32.6
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 2.4e-13 80.1 132 31.8
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.4e-13 80.1 131 35.9
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 2.4e-13 80.1 165 30.9
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 3.2e-13 79.7 168 29.8
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 3.2e-13 79.7 137 31.4
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 3.2e-13 79.7 168 30.4
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.2e-13 79.7 69 56.5
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 3.2e-13 79.7 131 31.3
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 3.2e-13 79.7 132 34.1
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.1e-13 79.3 170 30.0
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 4.1e-13 79.3 170 30.0
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 4.1e-13 79.3 173 30.1
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 5.4e-13 79.0 170 30.0
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 7.1e-13 78.6 159 30.8
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 7.1e-13 78.6 204 25.5
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 9.2e-13 78.2 167 28.7
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 9.2e-13 78.2 130 33.8
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 6.0e-12 75.5 213 29.1
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 6.0e-12 75.5 126 34.9
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 1.7e-11 73.9 167 29.3
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.7e-11 73.9 132 35.6
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.7e-11 73.9 129 31.0
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.3e-11 73.6 132 30.3
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 3.0e-11 73.2 137 33.6
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 3.0e-11 73.2 133 27.8
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 3.9e-11 72.8 121 33.1
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 3.9e-11 72.8 133 29.3
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 5.1e-11 72.4 165 31.5
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.1e-10 71.2 156 27.6
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 5.6e-10 68.9 185 29.2
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.6e-09 67.4 162 25.9
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 6.2e-09 65.5 58 56.9
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 2.3e-08 63.5 107 32.7
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 8.9e-08 61.6 72 38.9
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.2e-07 61.2 144 29.2
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.2e-07 61.2 93 33.3
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 1.5e-07 60.8 35 82.9
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 3.4e-07 59.7 74 41.9
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 7.6e-07 58.5 92 31.5
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.3e-06 57.8 136 28.7
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.7e-06 57.4 131 27.5


User provided reference genes

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