Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.3e-58 229.6 120 100.0
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.6e-56 222.6 120 97.5
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 5.7e-54 214.2 119 94.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.4e-52 209.5 120 92.5
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 4.1e-52 208.0 120 92.5
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.9e-50 201.8 120 87.5
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 3.8e-50 201.4 116 89.7
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 6.5e-50 200.7 119 88.2
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 8.5e-50 200.3 119 87.4
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.9e-49 199.1 120 89.2
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.9e-49 199.1 121 86.8
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 2.5e-49 198.7 119 87.4
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 4.2e-49 198.0 116 90.5
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 5.5e-49 197.6 118 88.1
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 9.4e-49 196.8 120 85.8
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 2.1e-48 195.7 119 86.6
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.7e-48 195.3 119 88.2
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.7e-48 195.3 119 88.2
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 6.1e-48 194.1 119 86.6
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.0e-47 193.4 119 87.4
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.0e-47 193.4 120 85.8
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.4e-47 193.0 119 84.9
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.4e-47 193.0 120 85.8
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-47 192.6 119 85.7
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 2.3e-47 192.2 117 84.6
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.3e-47 192.2 119 87.4
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 2.3e-47 192.2 119 85.7
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 3.9e-47 191.4 120 86.7
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 3.9e-47 191.4 120 86.7
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 5.1e-47 191.0 119 84.0
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 5.1e-47 191.0 120 85.0
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 6.7e-47 190.7 119 85.7
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.1e-46 189.9 119 85.7
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 2.5e-46 188.7 115 86.1
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-46 188.3 119 83.2
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.3e-46 188.0 116 85.3
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 5.7e-46 187.6 122 79.5
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 5.7e-46 187.6 119 84.0
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 5.7e-46 187.6 118 85.6
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 7.4e-46 187.2 119 84.9
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 7.4e-46 187.2 126 80.2
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 9.7e-46 186.8 116 86.2
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-45 186.4 119 83.2
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.3e-45 186.4 117 86.3
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 2.8e-45 185.3 112 85.7
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 8.2e-45 183.7 120 79.2
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 8.2e-45 183.7 112 84.8
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.4e-44 183.0 120 80.8
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.1e-44 181.8 122 80.3
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 3.1e-44 181.8 121 80.2
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 6.9e-44 180.6 122 79.5
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 6.9e-44 180.6 120 81.7
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 9.1e-44 180.3 111 84.7
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-43 179.9 122 80.3
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-43 179.9 118 82.2
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-43 179.9 118 82.2
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.2e-43 179.9 120 78.3
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-43 179.1 121 79.3
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 2.0e-43 179.1 121 79.3
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 2.0e-43 179.1 119 82.4
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.0e-43 179.1 111 83.8
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 2.0e-43 179.1 120 80.8
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.6e-43 178.7 120 80.0
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 2.6e-43 178.7 120 78.3
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-43 178.3 112 83.0
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 4.5e-43 177.9 112 82.1
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 5.9e-43 177.6 121 79.3
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 5.9e-43 177.6 111 82.9
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.7e-43 177.2 101 89.1
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.0e-42 176.8 111 82.9
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.0e-42 176.8 111 82.9
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.0e-42 176.8 122 78.7
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 1.3e-42 176.4 120 80.0
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.7e-42 176.0 123 78.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 2.2e-42 175.6 115 80.9
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 2.2e-42 175.6 100 89.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.2e-42 175.6 100 89.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.2e-42 175.6 100 89.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.2e-42 175.6 100 89.0
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 3.8e-42 174.9 114 77.2
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 8.5e-42 173.7 100 88.0
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.1e-41 173.3 121 78.5
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.1e-41 173.3 120 75.8
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.4e-41 172.9 105 84.8
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 4.2e-41 171.4 106 83.0
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 5.5e-41 171.0 101 87.1
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 5.5e-41 171.0 114 79.8
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 7.2e-41 170.6 112 75.9
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.2e-40 169.9 105 83.8
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.2e-40 169.9 119 76.5
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.6e-40 169.5 104 85.6
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.1e-40 169.1 117 77.8
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 4.7e-40 167.9 104 83.7
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.7e-40 167.9 116 77.6
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.7e-40 167.9 116 77.6
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 4.7e-40 167.9 125 73.6
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.0e-39 166.8 111 78.4
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.0e-39 166.8 102 82.4
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 1.0e-39 166.8 116 75.9
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 1.0e-39 166.8 116 75.9
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.0e-39 166.8 121 75.2
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.4e-39 166.4 113 76.1
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.3e-39 165.6 116 75.9
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 3.0e-39 165.2 118 75.4
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 5.1e-39 164.5 103 80.6
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.5e-38 162.9 110 80.0
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 2.0e-38 162.5 118 72.0
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 2.6e-38 162.2 116 76.7
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 3.3e-38 161.8 121 71.9
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.7e-37 159.5 98 80.6
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.8e-37 158.7 119 70.6
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 2.8e-37 158.7 119 70.6
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 3.7e-37 158.3 103 84.5
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 8.2e-37 157.1 111 76.6
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.4e-36 156.4 109 70.6
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 5.3e-36 154.5 111 75.7
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 3.5e-35 151.8 96 79.2
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.1e-33 146.7 85 87.1
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.9e-33 146.0 120 65.0
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 3.6e-32 141.7 104 74.0
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 3.6e-32 141.7 101 74.3
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 8.0e-32 140.6 107 68.2
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.9e-31 138.3 85 87.1
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-30 136.7 87 82.8
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.6e-27 126.3 116 60.3
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 4.5e-27 124.8 110 59.1
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 4.2e-25 118.2 91 71.4
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 4.2e-25 118.2 91 71.4
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.4e-23 113.2 67 83.6
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 8.8e-23 110.5 70 80.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.2e-22 110.2 64 79.7
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.0e-22 109.4 69 79.7
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 3.3e-22 108.6 68 79.4
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 7.5e-22 107.5 69 79.7
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.3e-21 106.7 98 54.1
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 4.5e-19 98.2 121 54.5
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 6.5e-18 94.4 74 68.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 4.2e-17 91.7 85 62.4
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-16 89.4 73 67.1
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 2.1e-16 89.4 56 80.4
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.0e-15 87.0 57 78.9
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 3.0e-15 85.5 87 56.3
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.2e-15 84.7 68 69.1
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 6.8e-15 84.3 114 44.7
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 7.5e-14 80.9 103 45.6
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.4e-12 75.9 82 56.1
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 5.4e-12 74.7 50 80.0
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 3.5e-11 72.0 60 58.3
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 3.8e-10 68.6 53 66.0
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.5e-09 66.6 84 53.6
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.5e-09 66.6 62 59.7
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 4.2e-09 65.1 113 36.3
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 5.5e-09 64.7 52 65.4
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 9.5e-09 63.9 44 72.7
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 6.1e-08 61.2 74 50.0
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-07 60.5 38 78.9
Sabra14G0106600 Salix brachista HOM05D001997 ORTHO05D005560 2.6e-06 55.8 48 68.8
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 5.7e-06 54.7 46 65.2
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 7.5e-06 54.3 44 61.4


User provided reference genes

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