Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p054086 Quercus lobata HOM05D003050 ORTHO05D030768 7.9e-94 347.1 169 100.0
QL03p011380 Quercus lobata HOM05D003050 ORTHO05D003513 1.5e-47 193.4 96 99.0
CiPaw.08G124500 Carya illinoinensis HOM05D003050 ORTHO05D003513 5.5e-39 164.9 96 85.4
VMungo0720G1669 Vigna mungo HOM05D003050 ORTHO05D003513 2.9e-32 142.5 96 74.0
ClCG03G017950 Citrullus lanatus HOM05D003050 ORTHO05D003513 3.9e-32 142.1 96 71.9
Phvul.007G206700 Phaseolus vulgaris HOM05D003050 ORTHO05D003513 1.9e-31 139.8 96 71.9
Lj5g0014866 Lotus japonicus HOM05D003050 ORTHO05D003513 3.3e-31 139.0 96 70.8
TWI12G0542 Tripterygium wilfordii HOM05D003050 ORTHO05D003513 5.6e-31 138.3 96 70.8
Glyma.10G141500 Glycine max HOM05D003050 ORTHO05D003513 7.3e-31 137.9 96 70.8
Lalb_Chr21g0309971 Lupinus albus HOM05D003050 ORTHO05D003513 9.5e-31 137.5 96 71.9
Lalb_Chr02g0147381 Lupinus albus HOM05D003050 ORTHO05D003513 1.2e-30 137.1 96 70.8
Sed0003328 Sechium edule HOM05D003050 ORTHO05D003513 2.8e-30 136.0 96 69.8
Glyma.20G090100 Glycine max HOM05D003050 ORTHO05D003513 3.6e-30 135.6 96 68.8
arahy.Tifrunner.gnm1.ann1.2YC2I5 Arachis hypogaea HOM05D003050 ORTHO05D003513 2.3e-29 132.9 96 65.6
MELO3C015227.2 Cucumis melo HOM05D003050 ORTHO05D003513 4.0e-29 132.1 96 67.7
Psat6g156560 Pisum sativum HOM05D003050 ORTHO05D003513 5.2e-29 131.7 96 69.8
TWI12G1424 Tripterygium wilfordii HOM05D003050 ORTHO05D003513 6.8e-29 131.3 96 68.8
CANSAT54G0864 Cannabis sativa HOM05D003050 ORTHO05D003513 1.2e-28 130.6 96 65.6
arahy.Tifrunner.gnm1.ann1.U6RQRB Arachis hypogaea HOM05D003050 ORTHO05D003513 1.5e-28 130.2 96 65.6
CsaV3_1G038230 Cucumis sativus L. HOM05D003050 ORTHO05D003513 2.0e-28 129.8 96 66.7
TPR.G34896 Trifolium pratense HOM05D003050 ORTHO05D003513 2.6e-28 129.4 96 69.8
PGR031G2140 Punica granatum HOM05D003050 ORTHO05D003513 7.5e-28 127.9 98 66.3
Medtr1g085150 Medicago truncatula HOM05D003050 ORTHO05D003513 1.3e-27 127.1 96 67.7
Ciclev10000427m.g Citrus clementina HOM05D003050 ORTHO05D003513 3.7e-27 125.6 96 70.8
ClCG01G011110 Citrullus lanatus HOM05D003050 ORTHO05D003513 1.1e-26 124.0 92 67.4
CANSAT21G1713 Cannabis sativa HOM05D003050 ORTHO05D003513 1.4e-26 123.6 96 62.5
Peaxi162Scf01168g00117 Petunia axillaris HOM05D003050 ORTHO05D003513 2.4e-26 122.9 94 59.6
Gorai.011G225600 Gossypium raimondii HOM05D003050 ORTHO05D003513 3.2e-26 122.5 97 62.9
Ca_10216_v3 Cicer arietinum L. HOM05D003050 ORTHO05D003513 4.1e-26 122.1 96 68.8
Gohir.A10G193500 Gossypium hirsutum HOM05D003050 ORTHO05D003513 4.1e-26 122.1 97 62.9
Cc02_g36940 Coffea canephora HOM05D003050 ORTHO05D003513 5.4e-26 121.7 93 66.7
Duzib114G0227 Durio zibethinus HOM05D003050 ORTHO05D003513 5.4e-26 121.7 96 62.5
Gohir.D10G200900 Gossypium hirsutum HOM05D003050 ORTHO05D003513 7.0e-26 121.3 97 61.9
Cpa.g.sc248.3 Carica papaya HOM05D003050 ORTHO05D003513 1.6e-25 120.2 96 63.5
Actinidia07341 Actinidia chinensis HOM05D003050 ORTHO05D003513 2.0e-25 119.8 93 64.5
Hma1.2p1_0157F.1_g069530 Hydrangea macrophylla HOM05D003050 ORTHO05D003513 1.0e-24 117.5 93 63.4
MD04G1184100 Malus domestica HOM05D003050 ORTHO05D003513 1.0e-24 117.5 96 61.5
Nitab4.5_0010734g0030 Nicotiana tabacum HOM05D003050 ORTHO05D003513 2.3e-24 116.3 94 60.6
TAR371G1131 Trochodendron aralioides HOM05D003050 ORTHO05D003513 3.0e-24 115.9 93 61.3
Actinidia21930 Actinidia chinensis HOM05D003050 ORTHO05D003513 3.9e-24 115.5 87 65.5
Gohir.D04G019500 Gossypium hirsutum HOM05D003050 ORTHO05D003513 3.9e-24 115.5 96 60.4
Gorai.012G023300 Gossypium raimondii HOM05D003050 ORTHO05D003513 3.9e-24 115.5 96 60.4
PSO210G7682 Papaver somniferum HOM05D003050 ORTHO05D003513 3.9e-24 115.5 94 63.8
Nitab4.5_0002058g0130 Nicotiana tabacum HOM05D003050 ORTHO05D003513 5.0e-24 115.2 94 59.6
Oeu036211.1 Olea europaea HOM05D003050 ORTHO05D003513 5.0e-24 115.2 93 61.3
Ca_10218_v3 Cicer arietinum L. HOM05D003050 ORTHO05D003513 6.6e-24 114.8 96 66.7
Thecc.05G331200 Theobroma cacao HOM05D003050 ORTHO05D003513 6.6e-24 114.8 99 58.6
TAR362G0842 Trochodendron aralioides HOM05D003050 ORTHO05D003513 6.6e-24 114.8 93 59.1
Atru.chr11.491 Acer truncatum HOM05D003050 ORTHO05D003513 1.1e-23 114.0 96 66.7
Nn5g27909 Nelumbo nucifera HOM05D003050 ORTHO05D003513 1.1e-23 114.0 93 60.2
PSO832G1810 Papaver somniferum HOM05D003050 ORTHO05D003513 1.1e-23 114.0 94 62.8
MD12G1197300 Malus domestica HOM05D003050 ORTHO05D003513 1.5e-23 113.6 96 61.5
Manes.09G182400 Manihot esculenta HOM05D003050 ORTHO05D003513 1.5e-23 113.6 97 59.8
PSO761G0062 Papaver somniferum HOM05D003050 ORTHO05D003513 1.9e-23 113.2 94 63.8
Sopen01g044860 Solanum pennellii HOM05D003050 ORTHO05D003513 1.9e-23 113.2 94 58.5
Gohir.A05G395500 Gossypium hirsutum HOM05D003050 ORTHO05D003513 2.5e-23 112.8 96 59.4
Hund02802 Selenicereus undatus HOM05D003050 ORTHO05D003513 2.5e-23 112.8 85 62.4
Manes.08G106300 Manihot esculenta HOM05D003050 ORTHO05D003513 3.3e-23 112.5 97 57.7
TAR633G1213 Trochodendron aralioides HOM05D003050 ORTHO05D003513 5.6e-23 111.7 93 59.1
COL.COLO4_30058 Corchorus olitorius HOM05D003050 ORTHO05D003513 1.2e-22 110.5 97 57.7
PGSC0003DMG400018234 Solanum tuberosum HOM05D003050 ORTHO05D003513 2.1e-22 109.8 94 57.4
Solyc01g102410.3 Solanum lycopersicum HOM05D003050 ORTHO05D003513 3.6e-22 109.0 94 57.4
Prupe.6G302600 Prunus persica HOM05D003050 ORTHO05D003513 4.7e-22 108.6 96 59.4
Ah.02g111050 Amaranthus hybridus HOM05D003050 ORTHO05D003513 8.0e-22 107.8 93 54.8
GSVIVG01031353001 Vitis vinifera HOM05D003050 ORTHO05D003513 8.0e-22 107.8 98 61.2
Potri.005G001200 Populus trichocarpa HOM05D003050 ORTHO05D003513 1.4e-21 107.1 100 59.0
vmacro19804 Vaccinium macrocarpon HOM05D003050 ORTHO05D003513 1.4e-21 107.1 93 55.9
MSTRG.20349 Avicennia marina HOM05D003050 ORTHO05D003513 2.3e-21 106.3 93 52.7
Migut.B00906 Erythranthe guttata HOM05D003050 ORTHO05D003513 3.1e-21 105.9 93 54.8
SGA_v2.0_scaffold279G46767 Striga asiatica HOM05D003050 ORTHO05D003513 3.1e-21 105.9 93 54.8
ATR0796G302 Amborella trichopoda HOM05D003050 ORTHO05D003513 4.0e-21 105.5 94 54.3
BraA02t08908Z Brassica rapa HOM05D003050 ORTHO05D003513 8.9e-21 104.4 95 56.8
Thhalv10003717m.g Eutrema salsugineum HOM05D003050 ORTHO05D003513 1.2e-20 104.0 120 49.2
Potri.013G000400 Populus trichocarpa HOM05D003050 ORTHO05D003513 1.2e-20 104.0 98 57.1
Hund09479 Selenicereus undatus HOM05D003050 ORTHO05D003513 1.2e-20 104.0 93 55.9
Sp2g21350 Schrenkiella parvula HOM05D003050 ORTHO05D003513 2.6e-20 102.8 94 56.4
Aqoxy2G01063 Aquilegia oxysepala HOM05D003050 ORTHO05D003513 3.4e-20 102.4 94 57.4
RcHm_v2.0_Chr3g0459011 Rosa chinensis HOM05D003050 ORTHO05D003513 3.4e-20 102.4 96 56.2
BcaB07g29965 Brassica carinata HOM05D003050 ORTHO05D003513 4.4e-20 102.1 120 48.3
Sabra05G0013500 Salix brachista HOM05D003050 ORTHO05D003513 4.4e-20 102.1 101 57.4
A09p05760 Brassica napus HOM05D003050 ORTHO05D003513 5.8e-20 101.7 94 57.4
Ah.03g141790 Amaranthus hybridus HOM05D003050 ORTHO05D003513 7.5e-20 101.3 97 50.5
A02p39390 Brassica napus HOM05D003050 ORTHO05D003513 7.5e-20 101.3 95 55.8
FAN02G4321 Fragaria x ananassa HOM05D003050 ORTHO05D003513 7.5e-20 101.3 96 55.2
FAN05G3179 Fragaria x ananassa HOM05D003050 ORTHO05D003513 7.5e-20 101.3 96 55.2
Rhsim06G0227500 Rhododendron simsii HOM05D000121 ORTHO05D003513 7.5e-20 101.3 93 57.0
CARHR186940 Cardamine hirsuta HOM05D003050 ORTHO05D003513 9.8e-20 100.9 94 56.4
Dinv24529 Davidia involucrata HOM05D003050 ORTHO05D003513 9.8e-20 100.9 93 59.1
HPP92_024100 Vanilla planifolia HOM05D003050 ORTHO05D003513 9.8e-20 100.9 84 59.5
Lsat_1_v5_gn_7_54881 Lactuca sativa HOM05D003050 ORTHO05D003513 1.3e-19 100.5 125 43.2
AL6G38480 Arabidopsis lyrata HOM05D003050 ORTHO05D003513 1.7e-19 100.1 94 55.3
BcaB04g19725 Brassica carinata HOM05D003050 ORTHO05D003513 1.7e-19 100.1 94 55.3
BraA09t36217Z Brassica rapa HOM05D003050 ORTHO05D003513 1.7e-19 100.1 94 56.4
CDE07G0190 Ceratophyllum demersum HOM05D003050 ORTHO05D003513 1.7e-19 100.1 94 51.1
AUR62008072 Chenopodium quinoa HOM05D003050 ORTHO05D003513 1.7e-19 100.1 93 54.8
AUR62028653 Chenopodium quinoa HOM05D003050 ORTHO05D003513 1.7e-19 100.1 94 54.3
Os01g0271200 Oryza sativa ssp. japonica HOM05D003050 ORTHO05D003513 1.7e-19 100.1 93 51.6
C09p06360 Brassica napus HOM05D003050 ORTHO05D003513 2.2e-19 99.8 96 57.3
Eucgr.H01345 Eucalyptus grandis HOM05D003050 ORTHO05D003513 2.2e-19 99.8 96 56.2
BcaC04g23627 Brassica carinata HOM05D003050 ORTHO05D003513 2.9e-19 99.4 97 56.7
FAN14G0147 Fragaria x ananassa HOM05D003050 ORTHO05D003513 2.9e-19 99.4 96 53.1
Aa31LG6G6800 Aethionema arabicum HOM05D003050 ORTHO05D003513 3.7e-19 99.0 94 56.4
Aqoxy1G00889 Aquilegia oxysepala HOM05D003050 ORTHO05D003513 3.7e-19 99.0 94 53.2
AT5G26710 Arabidopsis thaliana HOM05D003050 ORTHO05D003513 3.7e-19 99.0 94 54.3
FAN23G0425 Fragaria x ananassa HOM05D003050 ORTHO05D003513 3.7e-19 99.0 96 54.2
BolC9t53555H Brassica oleracea HOM05D003050 ORTHO05D003513 4.9e-19 98.6 95 56.8
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 6.4e-19 98.2 88 58.0
C02p59120 Brassica napus HOM05D003050 ORTHO05D003513 6.4e-19 98.2 94 55.3
BolC2t11967H Brassica oleracea HOM05D003050 ORTHO05D003513 6.4e-19 98.2 94 55.3
MBI18_g03866_MAGBIO Magnolia biondii HOM05D003050 ORTHO05D003513 6.4e-19 98.2 94 54.3
BcaC03g17873 Brassica carinata HOM05D003050 ORTHO05D003513 1.1e-18 97.4 94 55.3
FAN04G0100 Fragaria x ananassa HOM05D003050 ORTHO05D003513 1.1e-18 97.4 96 53.1
FAN13G3161 Fragaria x ananassa HOM05D003050 ORTHO05D003513 1.1e-18 97.4 96 54.2
FAN18G1855 Fragaria x ananassa HOM05D003050 ORTHO05D003513 1.1e-18 97.4 96 54.2
BraA01t01749Z Brassica rapa HOM05D003050 ORTHO05D003513 2.4e-18 96.3 89 59.6
FvH4_5g29940 Fragaria vesca HOM05D003050 ORTHO05D003513 2.4e-18 96.3 96 53.1
FvH4_6g08750 Fragaria vesca HOM05D003050 ORTHO05D003513 2.4e-18 96.3 96 52.1
SGA_v2.0_scaffold131G34491 Striga asiatica HOM05D003050 ORTHO05D003513 7.0e-18 94.7 93 53.8
BcaC09g50627 Brassica carinata HOM05D003050 ORTHO05D003513 9.2e-18 94.4 88 58.0
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 9.2e-18 94.4 88 58.0
THA.LOC104818766 Tarenaya hassleriana HOM05D003050 ORTHO05D003513 1.2e-17 94.0 94 54.3
Carub.0006s1562 Capsella rubella HOM05D003050 ORTHO05D003513 3.5e-17 92.4 94 53.2
Os10g0369000 Oryza sativa ssp. japonica HOM05D003050 ORTHO05D003513 4.6e-17 92.0 93 53.8
Zm00001eb402830 Zea mays HOM05D003050 ORTHO05D003513 6.0e-17 91.7 100 49.0
Mapoly0023s0025 Marchantia polymorpha HOM05D003050 ORTHO05D003513 1.0e-16 90.9 95 44.2
Zm00001eb003350 Zea mays HOM05D003050 ORTHO05D003513 1.0e-16 90.9 99 49.5
AL1G54410 Arabidopsis lyrata HOM05D003050 ORTHO05D003513 1.3e-16 90.5 86 52.3
Carub.0006s2425 Capsella rubella HOM05D003050 ORTHO05D003513 1.3e-16 90.5 94 52.1
Sc17g0001590 Simmondsia chinensis HOM05D003050 ORTHO05D003513 1.3e-16 90.5 93 50.5
EL10Ac5g10592 Beta vulgaris HOM05D003050 ORTHO05D003513 2.3e-16 89.7 93 51.6
HanXRQChr03g0071281 Helianthus annuus HOM05D003050 ORTHO05D003513 2.3e-16 89.7 94 44.7
A01p17940 Brassica napus HOM05D003050 ORTHO05D003513 5.1e-16 88.6 94 53.2
Lsat_1_v5_gn_3_137140 Lactuca sativa HOM05D003050 ORTHO05D003513 8.6e-16 87.8 96 44.8
FAN08G3470 Fragaria x ananassa HOM05D003050 ORTHO05D003513 5.6e-15 85.1 104 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3140 Anthoceros agrestis HOM05D003050 ORTHO05D003513 4.7e-14 82.0 97 43.3
Peaxi162Scf00194g00519 Petunia axillaris HOM05D003050 ORTHO05D003513 6.2e-14 81.6 94 47.9
AagrBONN_evm.TU.Sc2ySwM_117.1521 Anthoceros agrestis HOM05D003050 ORTHO05D003513 8.1e-14 81.3 96 42.7
EL10Ac8g19499 Beta vulgaris HOM05D003050 ORTHO05D003513 3.1e-13 79.3 85 43.5
DCAR_025145 Daucus carota HOM05D003050 ORTHO05D003513 4.0e-13 79.0 125 38.4
Rhsim05G0125800 Rhododendron simsii HOM05D003050 ORTHO05D030768 4.0e-13 79.0 65 60.0
SMO270G0106 Selaginella moellendorffii HOM05D003050 ORTHO05D003513 5.2e-13 78.6 92 42.4
Oeu016867.2 Olea europaea HOM05D003050 ORTHO05D003513 4.9e-11 72.0 49 57.1
Lj5A313G75 Lonicera japonica HOM05D003050 ORTHO05D003513 8.3e-11 71.2 49 65.3
Lj6A155G23 Lonicera japonica HOM05D003050 ORTHO05D003513 3.2e-10 69.3 49 65.3
A06p36840 Brassica napus HOM05D008255 ORTHO05D011943 7.1e-10 68.2 50 66.0
BraA06t26610Z Brassica rapa HOM05D008255 ORTHO05D011943 7.1e-10 68.2 50 66.0
HanXRQChr01g0006301 Helianthus annuus HOM05D003050 ORTHO05D003513 2.7e-09 66.2 90 37.8
unitig_21.g20715 Utricularia gibba HOM05D003050 ORTHO05D003513 3.5e-09 65.9 99 38.4
Atru.chr1.409 Acer truncatum HOM05D003050 ORTHO05D030768 7.8e-09 64.7 62 62.9
AUR62014111 Chenopodium quinoa HOM05D003050 ORTHO05D003513 8.6e-08 61.2 50 56.0
Prupe.8G045400 Prunus persica HOM05D003050 ORTHO05D003513 7.3e-07 58.2 49 57.1
Cfa018133 Carpinus fangiana HOM05D000061 ORTHO05D000050 8.1e-06 54.7 52 57.7
Lsat_1_v5_gn_3_136520 Lactuca sativa HOM05D003050 ORTHO05D003513 8.1e-06 54.7 93 35.5
MCO01G376 Micromonas commoda HOM05D003050 ORTHO05D003513 8.1e-06 54.7 98 34.7
MCO01G377 Micromonas commoda HOM05D003050 ORTHO05D003513 8.1e-06 54.7 98 34.7


User provided reference genes

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