Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 0.0e+00 1356.7 708 100.0
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 4.4e-239 831.6 717 63.2
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 1.9e-202 709.9 626 62.5
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.8e-179 633.6 721 50.3
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 1.3e-174 617.5 715 49.7
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 1.5e-170 604.0 728 51.5
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 2.8e-161 573.2 681 51.4
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.4e-155 554.3 713 47.0
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 3.4e-154 549.7 723 48.1
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.7e-151 540.0 713 46.4
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 3.5e-151 539.7 725 48.1
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 4.4e-146 522.7 730 44.5
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 2.3e-139 500.4 700 44.3
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 6.8e-139 498.8 709 44.1
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 2.0e-138 497.3 717 43.4
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.0e-138 497.3 716 44.3
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 4.4e-138 496.1 706 43.6
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 1.7e-137 494.2 695 44.2
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 8.3e-137 491.9 702 45.0
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 1.6e-135 487.6 714 43.8
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 2.0e-135 487.3 719 42.6
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 7.8e-135 485.3 682 46.5
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 2.3e-134 483.8 718 42.3
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 5.0e-134 482.6 730 45.9
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 4.3e-133 479.6 719 42.3
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.2e-132 475.7 717 43.1
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 8.0e-132 475.3 713 42.8
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 1.3e-129 468.0 704 42.9
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 2.9e-129 466.8 693 42.0
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 5.0e-126 456.1 722 42.7
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 1.9e-125 454.1 716 41.8
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 2.5e-125 453.8 725 39.7
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 2.1e-124 450.7 678 43.2
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 5.2e-123 446.0 707 41.6
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 6.8e-123 445.7 712 40.2
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 9.8e-122 441.8 708 42.4
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 1.1e-120 438.3 715 42.7
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 1.1e-120 438.3 715 42.7
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.9e-120 437.6 698 40.7
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 2.4e-120 437.2 725 39.7
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 5.4e-120 436.0 722 41.8
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 2.1e-119 434.1 708 41.4
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 3.5e-119 433.3 698 40.5
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 6.0e-119 432.6 722 39.5
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 1.7e-118 431.0 714 41.2
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 1.9e-117 427.6 719 40.8
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 4.3e-117 426.4 727 40.0
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 5.6e-117 426.0 674 41.8
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 2.1e-116 424.1 704 39.2
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 1.1e-115 421.8 698 40.1
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 8.9e-115 418.7 738 40.7
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.5e-114 417.9 688 41.4
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 1.3e-113 414.8 593 44.0
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 8.4e-113 412.1 722 41.3
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.3e-110 404.8 735 37.8
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 8.6e-110 402.1 709 40.5
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 3.4e-106 390.2 702 37.3
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 9.9e-106 388.7 655 39.5
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 6.0e-103 379.4 535 44.3
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 1.3e-102 378.3 714 36.7
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 1.3e-102 378.3 617 40.4
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 4.3e-101 373.2 728 37.5
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 1.6e-100 371.3 729 36.9
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 1.8e-99 367.9 749 35.4
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 3.1e-99 367.1 635 38.4
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.0e-99 366.7 409 50.4
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 5.3e-99 366.3 717 36.5
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 4.5e-98 363.2 717 36.8
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 5.8e-98 362.8 618 39.8
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 8.4e-97 359.0 728 36.4
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 4.2e-96 356.7 731 35.4
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.0e-94 352.1 660 35.3
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.3e-94 351.7 727 34.4
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.6e-92 344.7 693 35.6
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 3.7e-92 343.6 702 35.5
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 3.7e-92 343.6 740 33.9
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 3.7e-92 343.6 654 36.9
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 4.5e-90 336.7 728 34.5
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 4.9e-89 333.2 704 35.8
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 6.4e-89 332.8 590 42.9
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 6.4e-89 332.8 693 35.2
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 1.4e-88 331.6 590 42.7
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 5.1e-86 323.2 717 35.7
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 7.4e-85 319.3 737 33.8
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 2.0e-82 311.2 691 35.3
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 3.4e-82 310.5 642 35.8
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 3.3e-77 293.9 670 34.3
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 1.6e-76 291.6 670 33.4
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 2.1e-76 291.2 689 31.3
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 4.1e-75 287.0 670 33.7
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 6.9e-75 286.2 296 54.4
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.5e-74 285.0 614 36.5
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 6.3e-68 263.1 424 40.8
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.1e-67 262.3 339 43.7
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.7e-61 240.0 570 35.4
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 9.1e-59 232.6 425 38.1
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 3.4e-58 230.7 716 28.4
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.0e-57 229.2 291 46.7
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 2.9e-57 227.6 412 37.9
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 1.5e-53 215.3 711 28.3
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 2.6e-53 214.5 681 29.4
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 1.8e-51 208.4 382 36.4
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.0e-41 173.7 373 36.7
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 1.7e-36 158.7 705 24.7
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 1.3e-33 149.1 428 29.2
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 3.2e-32 144.4 418 28.9
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.1e-27 129.4 391 30.9
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 1.2e-26 125.9 404 29.0
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.7e-20 105.5 234 33.8
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 1.4e-19 102.4 347 26.2
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 7.0e-19 100.1 257 28.4
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.5e-16 92.4 95 47.4
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 4.9e-12 77.4 331 25.7
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 4.1e-11 74.3 127 36.2
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 2.3e-09 68.6 58 51.7
Pp3c1_41270 Physcomitrium patens HOM05D026854 ORTHO05D008189 3.3e-08 64.7 318 23.3
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 1.6e-07 62.4 89 41.6


User provided reference genes

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