Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 7.1e-74 280.4 132 100.0
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 5.6e-71 270.8 132 96.2
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.0e-40 170.2 80 97.5
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 9.3e-34 147.1 146 54.1
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 9.7e-31 137.1 120 59.2
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.7e-25 119.0 105 55.2
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 8.8e-24 114.0 116 50.0
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 2.6e-23 112.5 132 46.2
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 4.4e-23 111.7 117 50.4
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 4.4e-23 111.7 128 46.1
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 4.4e-23 111.7 116 48.3
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 7.4e-23 110.9 129 47.3
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 9.7e-23 110.5 132 45.5
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.3e-22 110.2 117 44.4
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 4.8e-22 108.2 120 45.8
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 6.3e-22 107.8 117 49.6
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 6.3e-22 107.8 116 47.4
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.4e-21 106.7 116 47.4
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 2.4e-21 105.9 136 42.6
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.1e-21 105.5 135 42.2
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 3.1e-21 105.5 116 45.7
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 5.3e-21 104.8 116 46.6
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 9.1e-21 104.0 116 45.7
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 9.1e-21 104.0 113 48.7
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.2e-20 103.6 116 44.8
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.2e-20 103.6 115 45.2
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.2e-20 103.6 116 45.7
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.6e-20 102.4 136 41.2
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 3.4e-20 102.1 116 44.8
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 4.5e-20 101.7 116 47.4
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 5.9e-20 101.3 120 42.5
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 5.9e-20 101.3 115 45.2
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.0e-19 100.5 118 44.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 1.0e-19 100.5 119 44.5
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.0e-19 100.5 119 44.5
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.0e-19 100.5 119 44.5
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.3e-19 100.1 116 44.0
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.2e-19 99.4 114 45.6
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 2.9e-19 99.0 117 46.2
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 2.9e-19 99.0 127 44.1
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.9e-19 99.0 116 43.1
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 2.9e-19 99.0 116 43.1
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 2.9e-19 99.0 128 43.0
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 3.8e-19 98.6 116 44.8
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 3.8e-19 98.6 119 43.7
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 5.0e-19 98.2 116 44.0
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 5.0e-19 98.2 114 46.5
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 5.0e-19 98.2 125 40.8
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 5.0e-19 98.2 115 45.2
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 6.5e-19 97.8 116 41.4
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 8.5e-19 97.4 116 44.0
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 8.5e-19 97.4 127 43.3
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 1.1e-18 97.1 116 43.1
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.1e-18 97.1 132 40.2
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.1e-18 97.1 116 43.1
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.9e-18 96.3 111 46.8
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.9e-18 96.3 114 43.9
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.9e-18 96.3 114 43.9
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 2.5e-18 95.9 112 42.9
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 2.5e-18 95.9 112 42.9
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 2.5e-18 95.9 116 44.0
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 2.5e-18 95.9 116 44.0
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 2.5e-18 95.9 116 44.0
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 5.5e-18 94.7 114 43.0
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 5.5e-18 94.7 115 42.6
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 5.5e-18 94.7 114 43.0
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 7.2e-18 94.4 113 44.2
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 7.2e-18 94.4 116 41.4
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 7.2e-18 94.4 117 42.7
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 9.4e-18 94.0 116 41.4
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 9.4e-18 94.0 115 43.5
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 9.4e-18 94.0 116 43.1
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 9.4e-18 94.0 115 42.6
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 1.2e-17 93.6 109 45.9
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.2e-17 93.6 116 41.4
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.6e-17 93.2 113 44.2
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 2.1e-17 92.8 112 42.9
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.1e-17 92.8 114 42.1
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 2.1e-17 92.8 116 43.1
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 2.1e-17 92.8 114 42.1
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 2.7e-17 92.4 110 44.5
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 3.6e-17 92.0 108 43.5
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 3.6e-17 92.0 114 42.1
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 4.7e-17 91.7 116 39.7
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 4.7e-17 91.7 113 43.4
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.7e-17 91.7 114 40.4
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.1e-17 91.3 108 41.7
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 8.0e-17 90.9 112 42.0
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 8.0e-17 90.9 116 41.4
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.0e-16 90.5 111 42.3
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.4e-16 90.1 119 38.7
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.4e-16 90.1 108 44.4
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.8e-16 89.7 111 40.5
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.3e-16 89.4 114 40.4
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 3.0e-16 89.0 115 41.7
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 5.2e-16 88.2 116 39.7
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 6.7e-16 87.8 112 41.1
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.7e-16 87.8 146 35.6
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 6.7e-16 87.8 111 40.5
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 8.8e-16 87.4 116 41.4
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.1e-15 87.0 110 41.8
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.1e-15 87.0 114 39.5
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 1.1e-15 87.0 114 39.5
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 4.4e-15 85.1 111 38.7
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.7e-15 84.7 135 36.3
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 7.4e-15 84.3 112 40.2
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.3e-14 83.6 123 36.6
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.3e-14 83.6 138 37.0
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.3e-14 83.6 114 39.5
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.8e-14 81.6 97 43.3
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.1e-13 80.5 110 38.2
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.8e-13 79.7 98 43.9
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 7.0e-13 77.8 110 34.5
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.6e-12 76.6 108 37.0
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.0e-11 73.9 45 68.9
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 3.8e-11 72.0 92 40.2
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 5.0e-11 71.6 109 35.8
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 8.5e-11 70.9 43 67.4
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 8.5e-11 70.9 109 34.9
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.9e-10 69.7 47 61.7
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 4.7e-09 65.1 43 62.8
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 6.1e-09 64.7 43 62.8
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.8e-08 63.2 93 39.8
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.3e-08 62.8 108 32.4
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.2e-08 61.6 82 41.5
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 6.7e-08 61.2 107 32.7
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 1.7e-06 56.6 113 31.9
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.8e-06 55.8 29 72.4


User provided reference genes

Program Settings