Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 0.0e+00 1154.4 564 100.0
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.1e-146 523.5 477 58.7
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 1.0e-129 468.0 486 52.7
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.2e-125 454.5 270 85.6
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.3e-124 451.1 484 52.7
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 3.0e-121 439.9 490 50.4
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 8.1e-119 431.8 498 48.6
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.7e-116 424.1 487 49.5
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 6.0e-114 415.6 491 47.9
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 3.0e-113 413.3 485 47.6
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 9.0e-110 401.7 483 49.1
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 5.8e-109 399.1 486 48.6
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 8.4e-108 395.2 487 48.3
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 1.4e-107 394.4 482 44.2
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 3.2e-107 393.3 458 49.1
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 5.5e-107 392.5 458 49.1
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 5.5e-107 392.5 481 46.8
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 9.3e-107 391.7 483 44.7
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 9.3e-107 391.7 483 45.3
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.7e-106 390.2 481 45.3
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 3.0e-105 386.7 490 47.8
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 5.1e-105 386.0 486 45.9
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 1.9e-104 384.0 483 44.5
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 4.3e-104 382.9 489 44.4
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 5.6e-104 382.5 483 44.7
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.8e-103 380.2 481 44.9
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 8.2e-103 378.6 490 46.9
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 1.8e-102 377.5 502 43.8
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 3.1e-102 376.7 489 45.0
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 6.9e-102 375.6 486 45.5
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 9.0e-102 375.2 505 43.4
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.0e-101 374.0 494 44.3
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 2.0e-101 374.0 491 44.2
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.6e-101 373.6 491 45.6
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 4.5e-101 372.9 481 45.7
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 1.4e-99 367.9 486 43.2
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.5e-98 363.2 523 41.3
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 3.5e-98 363.2 498 42.4
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 1.0e-97 361.7 284 64.4
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.0e-97 361.7 483 44.5
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.5e-96 357.8 293 63.1
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 2.5e-96 357.1 495 45.1
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 4.3e-96 356.3 491 43.8
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.1e-94 350.1 482 40.2
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 4.1e-94 349.7 476 43.5
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 2.0e-93 347.4 493 40.6
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.6e-93 347.1 479 41.1
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.7e-93 345.5 486 41.8
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.0e-92 345.1 429 44.3
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 5.0e-92 342.8 495 40.6
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.4e-91 341.3 490 39.4
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 1.2e-90 338.2 483 43.5
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 8.8e-89 332.0 489 40.3
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.5e-88 331.3 509 39.3
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 9.7e-88 328.6 483 40.2
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 1.7e-87 327.8 496 39.9
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.7e-87 327.8 280 57.5
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 4.8e-87 326.2 487 39.6
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 1.1e-86 325.1 507 40.4
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.1e-86 323.6 483 41.6
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 4.1e-86 323.2 497 39.2
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 4.1e-86 323.2 497 39.2
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 4.1e-86 323.2 490 39.8
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.2e-85 321.6 497 39.0
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 3.4e-85 320.1 507 40.4
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.3e-84 318.2 495 40.6
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.7e-84 317.8 382 50.5
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.1e-82 310.8 436 41.3
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 7.9e-82 308.9 286 55.9
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 5.7e-80 302.8 291 56.4
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.3e-79 301.6 497 36.6
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 1.1e-78 298.5 484 37.2
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 4.1e-78 296.6 294 51.0
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.6e-77 293.9 264 59.5
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 6.5e-76 289.3 284 55.3
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 6.5e-76 289.3 482 38.0
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 6.5e-76 289.3 279 55.9
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.8e-73 281.2 269 55.8
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.3e-73 280.8 487 37.0
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 4.8e-71 273.1 258 57.4
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 8.2e-71 272.3 503 37.4
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 4.1e-70 270.0 266 56.0
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 7.0e-70 269.2 288 49.0
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.3e-68 265.0 244 58.2
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.9e-68 263.8 244 57.8
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 3.2e-67 260.4 257 55.3
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.2e-67 260.4 411 39.2
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 4.2e-67 260.0 249 56.6
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 7.2e-67 259.2 499 35.1
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 2.3e-65 254.2 491 34.4
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.7e-63 248.1 301 48.2
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.8e-63 247.3 327 44.6
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.4e-62 245.0 249 52.2
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.1e-62 243.8 255 52.9
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 7.0e-62 242.7 170 70.6
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.6e-61 241.5 255 51.8
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 2.0e-61 241.1 491 32.8
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.0e-61 241.1 199 57.8
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.0e-61 241.1 248 54.0
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 3.5e-61 240.4 250 52.8
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 5.9e-61 239.6 255 52.5
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.3e-60 238.4 328 43.3
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.5e-59 234.2 251 51.0
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 5.5e-59 233.0 214 56.5
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 2.1e-58 231.1 244 51.2
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 3.4e-56 223.8 243 52.7
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 7.5e-56 222.6 258 49.2
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 3.7e-55 220.3 241 51.9
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 6.3e-55 219.5 257 48.2
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 8.3e-55 219.2 251 47.4
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.8e-54 218.0 489 31.5
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 2.4e-54 217.6 254 48.8
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.6e-53 214.9 253 48.2
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 2.0e-53 214.5 206 57.8
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 2.7e-53 214.2 253 48.2
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.7e-53 214.2 251 48.6
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 7.7e-53 212.6 253 47.4
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.7e-52 211.5 252 47.6
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.3e-52 211.1 252 47.6
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.3e-52 211.1 210 52.9
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.6e-52 209.5 256 48.0
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 4.2e-51 206.8 253 47.4
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 5.5e-51 206.5 253 47.8
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 6.3e-47 193.0 314 38.2
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 3.2e-46 190.7 186 50.5
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.7e-45 187.6 268 42.2
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 4.5e-45 186.8 360 35.0
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.9e-45 186.4 199 51.3
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 9.5e-43 179.1 273 37.7
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 6.1e-42 176.4 213 44.6
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 2.6e-40 171.0 285 37.2
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 6.0e-37 159.8 172 47.1
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 6.6e-36 156.4 152 55.3
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 2.5e-35 154.5 218 41.3
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 2.5e-35 154.5 196 44.9
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 1.1e-30 139.0 159 50.9
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.9e-30 138.3 162 46.3
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 1.9e-27 128.3 262 35.1
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 2.9e-23 114.4 65 83.1
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 3.5e-21 107.5 55 81.8
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 5.2e-17 93.6 177 37.9
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 4.9e-15 87.0 110 48.2
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.3e-12 79.0 124 40.3
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 1.3e-12 79.0 47 68.1
QL01p028728 Quercus lobata HOM05D001295 ORTHO05D005319 2.3e-12 78.2 51 78.4
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 8.7e-12 76.3 82 45.1
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-11 75.9 79 46.8
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 5.6e-11 73.6 55 63.6
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 2.0e-08 65.1 150 34.0
MBI07_g05950_MAGBIO Magnolia biondii HOM05D003063 ORTHO05D003242 5.4e-06 57.0 59 45.8
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 5.4e-06 57.0 140 29.3


User provided reference genes

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