Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 6.8e-262 906.7 443 100.0
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.8e-198 696.0 443 76.7
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.5e-192 676.4 476 71.6
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 4.6e-186 654.8 443 69.1
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 5.1e-185 651.4 443 69.8
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 8.2e-183 644.0 443 68.8
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 9.0e-182 640.6 443 67.7
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 2.9e-180 635.6 445 69.2
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 3.8e-180 635.2 443 69.3
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 6.5e-180 634.4 443 67.9
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 8.5e-180 634.0 443 68.2
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 9.4e-179 630.6 428 72.0
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 9.4e-179 630.6 443 67.7
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 1.6e-178 629.8 443 66.6
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 1.6e-178 629.8 443 67.5
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.7e-178 629.0 445 68.1
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 6.1e-178 627.9 443 68.4
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 7.9e-178 627.5 443 65.9
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 6.7e-177 624.4 443 68.4
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 4.3e-176 621.7 441 68.3
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 1.4e-174 616.7 443 66.1
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.4e-174 616.7 443 67.0
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 2.4e-174 615.9 443 66.1
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 5.3e-174 614.8 444 67.8
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.5e-173 613.2 443 67.7
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.6e-173 612.5 443 67.3
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 3.4e-173 612.1 455 64.0
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.5e-173 611.7 443 67.9
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.4e-171 606.7 442 67.0
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.9e-171 606.3 443 66.4
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 4.2e-171 605.1 442 64.9
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 4.2e-171 605.1 443 65.5
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 4.7e-170 601.7 443 65.0
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 6.1e-170 601.3 442 64.3
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 7.9e-170 600.9 443 63.4
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.0e-169 600.5 444 66.4
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.4e-169 600.1 444 66.4
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 2.3e-169 599.4 443 63.0
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 6.7e-169 597.8 442 64.9
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 8.8e-169 597.4 488 61.5
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.5e-168 596.7 440 69.5
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.0e-168 596.3 444 66.2
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.3e-168 595.5 444 65.8
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 5.7e-168 594.7 441 63.7
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 7.4e-168 594.3 445 65.4
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.3e-167 593.6 445 63.6
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.3e-167 593.6 443 65.7
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 2.2e-167 592.8 443 64.3
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 4.1e-166 588.6 444 64.6
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 4.1e-166 588.6 443 65.9
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 7.0e-166 587.8 441 63.7
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.5e-165 586.6 441 62.8
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 2.0e-165 586.3 443 63.2
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 5.9e-165 584.7 443 65.0
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.8e-164 582.0 443 64.3
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.1e-163 580.5 443 63.4
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.4e-163 580.1 442 62.0
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 2.1e-162 576.2 443 62.8
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 6.1e-162 574.7 443 63.0
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.3e-161 572.8 420 64.5
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 3.0e-161 572.4 445 62.2
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.5e-160 570.1 443 64.3
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 5.7e-160 568.2 446 61.9
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 2.2e-159 566.2 443 61.9
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 6.3e-159 564.7 443 61.9
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 3.1e-158 562.4 444 61.3
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 4.1e-158 562.0 443 61.6
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 4.1e-158 562.0 443 62.1
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.2e-157 560.5 443 61.6
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 5.9e-157 558.1 444 60.8
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 2.5e-155 552.7 443 62.1
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 3.2e-155 552.4 364 73.6
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 6.8e-153 544.7 443 61.4
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 6.8e-153 544.7 364 71.2
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 2.6e-152 542.7 443 60.5
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 2.6e-152 542.7 443 60.5
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 2.6e-152 542.7 446 59.9
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 3.4e-152 542.3 418 62.9
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 7.5e-152 541.2 441 59.0
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 7.5e-152 541.2 443 59.4
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 9.7e-152 540.8 444 60.4
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 9.7e-152 540.8 444 60.4
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.2e-149 533.9 401 65.1
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 2.0e-149 533.1 458 58.5
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 8.5e-148 527.7 383 67.9
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.9e-147 526.6 441 59.2
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 8.0e-146 521.2 440 57.3
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.0e-145 519.2 441 58.0
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.4e-144 515.4 443 58.5
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 4.8e-143 511.9 368 69.6
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.4e-142 509.6 443 59.8
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.7e-141 506.1 438 60.5
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.3e-140 503.1 443 55.1
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.2e-139 498.8 382 63.9
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.0e-137 494.2 386 60.9
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.2e-136 490.7 381 61.7
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 1.5e-136 490.3 444 55.2
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 1.3e-135 487.3 405 59.0
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.8e-134 483.4 441 55.8
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 6.6e-132 474.9 446 53.6
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.1e-131 474.2 443 55.3
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 9.5e-131 471.1 444 53.6
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.0e-129 467.6 313 71.6
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 4.0e-129 465.7 444 54.7
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 4.0e-129 465.7 444 54.7
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 4.0e-129 465.7 444 54.7
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 3.7e-127 459.1 462 51.7
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 3.9e-124 449.1 458 51.3
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.3e-123 446.0 232 91.4
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.6e-120 436.4 444 53.2
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.0e-116 422.9 417 53.0
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.9e-115 420.2 448 51.3
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.1e-113 414.5 437 50.6
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 2.6e-104 383.3 308 60.4
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.1e-99 367.9 308 60.1
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 4.8e-98 362.5 445 47.0
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 5.3e-97 359.0 371 52.6
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 5.8e-96 355.5 442 43.9
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.8e-95 352.8 438 42.9
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 9.3e-94 348.2 442 41.2
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 5.3e-89 332.4 440 42.5
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 5.8e-88 328.9 426 41.5
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 4.2e-86 322.8 382 47.4
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 7.9e-85 318.5 446 43.9
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.8e-84 317.4 245 60.4
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 3.0e-84 316.6 444 41.7
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.3e-82 311.2 183 82.5
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.2e-71 273.9 267 55.1
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 4.3e-67 259.6 311 47.3
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.2e-61 241.5 517 32.3
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 3.6e-61 240.0 479 33.8
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.0e-60 238.4 146 76.7
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 2.1e-53 214.2 146 69.2
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.8e-36 157.9 492 29.5
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.3e-36 157.5 136 57.4
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 3.2e-30 137.1 102 61.8
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 9.4e-30 135.6 92 72.8
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 3.3e-22 110.5 89 57.3
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 1.6e-21 108.2 72 65.3
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 3.6e-13 80.5 330 25.2
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 9.8e-11 72.4 69 55.1
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.2e-08 65.5 140 35.7
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 1.6e-08 65.1 140 36.4
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.7e-08 64.3 117 34.2
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.7e-08 64.3 140 35.0
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.3e-07 61.2 96 36.5
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 6.6e-07 59.7 33 84.8


User provided reference genes

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