Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 2.1e-100 369.0 184 100.0
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 4.3e-69 265.0 198 72.2
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 8.1e-68 260.8 188 73.9
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 3.9e-62 241.9 193 68.4
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 4.8e-60 235.0 187 66.3
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.2e-58 230.3 189 66.7
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 7.6e-58 227.6 190 63.7
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.3e-57 226.9 191 65.4
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 2.4e-56 222.6 189 63.5
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 4.2e-56 221.9 189 62.4
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 7.9e-55 217.6 190 62.6
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 1.9e-53 213.0 174 65.5
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 4.3e-53 211.8 192 62.5
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 5.3e-51 204.9 199 63.3
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.5e-50 203.4 186 60.2
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 8.4e-49 197.6 190 60.5
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 1.1e-48 197.2 197 62.4
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 3.2e-48 195.7 186 58.1
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 5.1e-46 188.3 200 52.5
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.1e-45 187.2 201 51.7
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 9.6e-45 184.1 202 51.0
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 1.3e-44 183.7 208 53.4
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.1e-44 183.0 183 56.8
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 2.1e-44 183.0 200 54.5
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 1.1e-43 180.6 213 54.0
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.1e-43 180.6 199 56.8
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 1.4e-43 180.3 186 54.8
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.8e-43 179.9 198 56.6
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 9.0e-43 177.6 199 57.8
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 9.0e-43 177.6 198 56.1
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 1.2e-42 177.2 207 50.7
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 2.0e-42 176.4 184 55.4
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 1.0e-41 174.1 178 54.5
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 3.2e-40 169.1 153 59.5
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 3.2e-40 169.1 153 59.5
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 1.0e-38 164.1 142 58.5
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 5.1e-38 161.8 186 51.6
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 8.7e-38 161.0 156 57.7
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 1.1e-37 160.6 119 69.7
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 1.1e-37 160.6 171 56.7
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 1.1e-37 160.6 171 56.7
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 4.3e-37 158.7 220 47.3
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 7.4e-37 157.9 213 48.4
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 1.6e-36 156.8 173 54.3
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 1.2e-34 150.6 178 51.1
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 2.0e-34 149.8 154 53.9
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 1.3e-33 147.1 197 46.2
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.2e-33 146.4 190 49.5
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.8e-33 145.6 172 55.2
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 7.2e-32 141.4 184 52.2
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 2.7e-31 139.4 160 51.2
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 2.7e-31 139.4 193 47.2
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 5.1e-30 135.2 209 42.1
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 5.7e-29 131.7 213 42.7
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 3.7e-28 129.0 161 49.7
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 1.4e-27 127.1 192 44.3
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 7.9e-23 111.3 176 39.8
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.3e-22 109.8 140 44.3
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 4.8e-20 102.1 220 32.7
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 1.4e-19 100.5 143 38.5
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 5.9e-18 95.1 177 29.9
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 5.9e-18 95.1 139 43.9
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.7e-17 93.6 152 34.9
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 2.2e-17 93.2 191 28.8
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.9e-17 92.8 141 37.6
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 5.0e-17 92.0 177 29.4
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.4e-16 90.5 179 33.0
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.4e-16 90.5 160 29.4
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 4.2e-16 89.0 128 47.7
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 5.5e-16 88.6 189 31.7
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 5.5e-16 88.6 168 34.5
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 7.2e-16 88.2 204 29.9
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 2.1e-15 86.7 159 31.4
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.7e-15 86.3 147 32.7
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 3.6e-15 85.9 127 37.8
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 6.1e-15 85.1 174 31.6
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.0e-14 84.3 170 32.4
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 1.4e-14 84.0 190 33.2
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 1.4e-14 84.0 133 35.3
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.4e-14 84.0 198 31.8
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.4e-14 84.0 206 30.1
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.4e-14 84.0 195 30.3
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.3e-14 83.2 199 31.2
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 3.0e-14 82.8 182 31.3
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.9e-14 82.4 162 34.0
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 3.9e-14 82.4 151 31.1
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 3.9e-14 82.4 194 30.9
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 5.1e-14 82.0 158 31.6
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 8.8e-14 81.3 132 36.4
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 8.8e-14 81.3 132 36.4
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 8.8e-14 81.3 139 36.0
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 8.8e-14 81.3 148 34.5
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.1e-13 80.9 131 33.6
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 1.5e-13 80.5 156 32.7
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.5e-13 80.5 148 34.5
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 1.5e-13 80.5 191 30.9
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 1.5e-13 80.5 133 42.1
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.5e-13 80.5 182 30.8
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.0e-13 80.1 191 28.8
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 2.6e-13 79.7 153 30.1
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 2.6e-13 79.7 144 31.2
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.6e-13 79.7 187 28.9
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 2.6e-13 79.7 186 29.0
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 3.3e-13 79.3 190 32.1
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 3.3e-13 79.3 195 30.3
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 4.4e-13 79.0 187 30.5
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 5.7e-13 78.6 132 35.6
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 5.7e-13 78.6 190 28.9
PSO017G2423 Papaver somniferum HOM05D047741 ORTHO05D002891 7.4e-13 78.2 203 36.9
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 7.4e-13 78.2 149 32.2
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 9.7e-13 77.8 146 30.8
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 1.3e-12 77.4 190 28.9
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.3e-12 77.4 190 30.0
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 1.3e-12 77.4 156 31.4
PSO675G3707 Papaver somniferum HOM05D047741 ORTHO05D002891 1.3e-12 77.4 203 37.4
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.7e-12 77.0 163 31.3
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.7e-12 77.0 195 30.3
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 1.7e-12 77.0 153 32.0
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.7e-12 77.0 196 28.6
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 2.8e-12 76.3 189 29.6
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 2.8e-12 76.3 158 31.0
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 4.8e-12 75.5 214 25.2
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 4.8e-12 75.5 161 29.8
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 4.8e-12 75.5 156 30.1
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 4.8e-12 75.5 173 33.5
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 6.3e-12 75.1 156 30.8
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 6.3e-12 75.1 154 30.5
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 8.2e-12 74.7 195 29.2
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 1.1e-11 74.3 174 30.5
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.1e-11 74.3 176 34.1
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.4e-11 73.9 170 27.6
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.4e-11 73.9 143 30.8
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 2.4e-11 73.2 212 27.4
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 2.4e-11 73.2 158 28.5
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.4e-11 73.2 160 27.5
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 3.1e-11 72.8 136 32.4
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 4.1e-11 72.4 174 29.9
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 4.1e-11 72.4 139 30.2
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 4.1e-11 72.4 150 32.0
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 4.1e-11 72.4 143 30.1
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 5.3e-11 72.0 194 26.8
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 5.3e-11 72.0 191 26.7
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 9.1e-11 71.2 145 31.0
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 9.1e-11 71.2 171 28.1
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.2e-10 70.9 146 29.5
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 1.2e-10 70.9 203 27.1
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 1.2e-10 70.9 212 25.9
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 1.2e-10 70.9 182 28.6
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 1.6e-10 70.5 186 29.0
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 2.6e-10 69.7 183 28.4
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.6e-10 69.7 146 30.1
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 3.5e-10 69.3 158 31.6
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 5.9e-10 68.6 156 29.5
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 7.7e-10 68.2 145 28.3
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 1.0e-09 67.8 180 32.2
MELO3C030199.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.3e-09 67.4 80 55.0
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 2.2e-09 66.6 179 28.5
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 2.9e-09 66.2 181 27.1
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.8e-09 65.9 159 27.7
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 6.5e-09 65.1 144 31.2
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 1.5e-08 63.9 191 28.8
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 1.5e-08 63.9 192 31.2
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 1.9e-08 63.5 174 30.5
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.9e-08 63.5 190 24.2
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 1.9e-08 63.5 146 27.4
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 2.5e-08 63.2 182 28.6
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 3.2e-08 62.8 190 29.5
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 4.2e-08 62.4 202 30.7
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 7.2e-08 61.6 190 30.0
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 1.2e-07 60.8 203 30.5
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.2e-07 60.8 191 25.1
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 1.2e-07 60.8 160 25.6
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 1.6e-07 60.5 128 33.6
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 2.1e-07 60.1 189 31.2
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.1e-07 60.1 107 32.7
Nn6g34775 Nelumbo nucifera HOM05D001667 ORTHO05D001508 2.7e-07 59.7 127 33.1
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 2.7e-07 59.7 177 25.4
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 6.1e-07 58.5 180 29.4
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 8.0e-07 58.2 183 29.5
TAR633G2309 Trochodendron aralioides HOM05D001667 ORTHO05D001508 8.0e-07 58.2 131 32.8
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 1.0e-06 57.8 196 26.5
PGR004G2379 Punica granatum HOM05D001667 ORTHO05D001508 1.0e-06 57.8 127 32.3
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 1.8e-06 57.0 153 33.3
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 2.3e-06 56.6 197 27.9
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 5.2e-06 55.5 126 28.6
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 6.7e-06 55.1 93 37.6


User provided reference genes

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