Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p045538 Quercus lobata HOM05D005441 ORTHO05D006879 1.4e-95 352.8 168 100.0
QL05p004724 Quercus lobata HOM05D005441 ORTHO05D006879 1.6e-91 339.3 175 94.3
QL10p044609 Quercus lobata HOM05D005441 ORTHO05D006879 1.6e-91 339.3 175 94.3
QL07p005564 Quercus lobata HOM05D005441 ORTHO05D006879 4.3e-84 314.7 175 88.0
QL07p005282 Quercus lobata HOM05D005441 ORTHO05D006879 7.1e-71 270.8 181 76.2
QL07p005267 Quercus lobata HOM05D005441 ORTHO05D006879 1.6e-62 243.0 163 75.5
Cfa016756 Carpinus fangiana HOM05D005441 ORTHO05D006879 2.7e-62 242.3 161 72.0
Haze_19745 Corylus avellana HOM05D005441 ORTHO05D006879 7.9e-62 240.7 160 72.5
Duzib106G1775 Durio zibethinus HOM05D005441 ORTHO05D006879 5.3e-58 228.0 128 79.7
QL07p005351 Quercus lobata HOM05D005441 ORTHO05D006879 6.9e-58 227.6 166 69.9
QL07p005518 Quercus lobata HOM05D005441 ORTHO05D006879 2.0e-57 226.1 161 72.7
CiPaw.09G041900 Carya illinoinensis HOM05D005441 ORTHO05D006879 2.9e-56 222.2 162 71.0
Dinv39675 Davidia involucrata HOM05D005441 ORTHO05D006879 3.8e-56 221.9 168 67.3
Thecc.05G145600 Theobroma cacao HOM05D005441 ORTHO05D006879 2.5e-55 219.2 159 66.0
QL05p004486 Quercus lobata HOM05D005441 ORTHO05D006879 3.2e-55 218.8 161 70.8
Gohir.A09G119900 Gossypium hirsutum HOM05D005441 ORTHO05D006879 4.2e-55 218.4 161 62.7
Gohir.D09G116100 Gossypium hirsutum HOM05D005441 ORTHO05D006879 5.5e-55 218.0 157 65.0
Gorai.006G134400 Gossypium raimondii HOM05D005441 ORTHO05D006879 5.5e-55 218.0 157 65.0
CSS0036594 Camellia sinensis var. sinensis HOM05D005441 ORTHO05D006879 9.4e-55 217.2 157 68.8
Ca_30943_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 4.6e-54 214.9 130 73.8
Manes.08G054100 Manihot esculenta HOM05D005441 ORTHO05D006879 6.1e-54 214.5 124 76.6
Potri.016G042500 Populus trichocarpa HOM05D005441 ORTHO05D006879 7.9e-54 214.2 172 60.5
Medtr1g051760 Medicago truncatula HOM05D005441 ORTHO05D006879 3.0e-53 212.2 134 70.9
Eucgr.A02298 Eucalyptus grandis HOM05D005441 ORTHO05D006879 3.9e-53 211.8 138 71.0
Ciclev10005135m.g Citrus clementina HOM05D005441 ORTHO05D006879 1.1e-52 210.3 127 75.6
Lj2A389T89 Lonicera japonica HOM05D005441 ORTHO05D006879 2.0e-52 209.5 172 62.2
arahy.Tifrunner.gnm1.ann1.I76ATH Arachis hypogaea HOM05D005441 ORTHO05D006879 3.3e-52 208.8 131 73.3
Eucgr.A02299 Eucalyptus grandis HOM05D005441 ORTHO05D006879 3.3e-52 208.8 148 68.9
Atru.chr1.1186 Acer truncatum HOM05D005441 ORTHO05D006879 5.7e-52 208.0 151 67.5
Glyma.02G192200 Glycine max HOM05D005441 ORTHO05D006879 5.7e-52 208.0 128 71.9
Lj3g0025341 Lotus japonicus HOM05D005441 ORTHO05D006879 5.7e-52 208.0 131 68.7
PGR004G1247 Punica granatum HOM05D005441 ORTHO05D006879 9.7e-52 207.2 128 71.9
Rhsim03G0030800 Rhododendron simsii HOM05D005441 ORTHO05D006879 1.7e-51 206.5 164 62.2
Eucgr.A02300 Eucalyptus grandis HOM05D005441 ORTHO05D006879 2.8e-51 205.7 118 78.0
HanXRQChr14g0444961 Helianthus annuus HOM05D005441 ORTHO05D006879 3.7e-51 205.3 145 62.8
Phvul.007G249800 Phaseolus vulgaris HOM05D005441 ORTHO05D006879 4.8e-51 204.9 135 67.4
Ciclev10007026m.g Citrus clementina HOM05D005441 ORTHO05D006879 6.3e-51 204.5 125 76.0
VMungo0720G1530 Vigna mungo HOM05D005441 ORTHO05D006879 6.3e-51 204.5 136 66.9
Hund05910 Selenicereus undatus HOM05D005441 ORTHO05D006879 8.2e-51 204.1 150 62.0
FvH4_6g24730 Fragaria vesca HOM05D005441 ORTHO05D006879 4.1e-50 201.8 151 63.6
TWI53G1498 Tripterygium wilfordii HOM05D005441 ORTHO05D006879 4.1e-50 201.8 115 80.0
Cpa.g.sc120.4 Carica papaya HOM05D005441 ORTHO05D006879 5.3e-50 201.4 124 71.8
Lalb_Chr02g0156401 Lupinus albus HOM05D005441 ORTHO05D006879 5.3e-50 201.4 127 70.1
FAN05G4498 Fragaria x ananassa HOM05D005441 ORTHO05D006879 6.9e-50 201.1 151 63.6
A05p38950 Brassica napus HOM05D005441 ORTHO05D006879 9.1e-50 200.7 156 60.3
BraA05t22686Z Brassica rapa HOM05D005441 ORTHO05D006879 9.1e-50 200.7 156 60.3
Cc06_g18310 Coffea canephora HOM05D005441 ORTHO05D006879 9.1e-50 200.7 126 70.6
TAR369G0103 Trochodendron aralioides HOM05D005441 ORTHO05D006879 1.2e-49 200.3 161 58.4
GSVIVG01033547001 Vitis vinifera HOM05D005441 ORTHO05D006879 1.5e-49 199.9 163 59.5
Oeu006920.1 Olea europaea HOM05D005441 ORTHO05D006879 2.0e-49 199.5 123 74.0
Rhsim03G0030500 Rhododendron simsii HOM05D005441 ORTHO05D006879 2.0e-49 199.5 120 73.3
vmacro21956 Vaccinium macrocarpon HOM05D005441 ORTHO05D006879 2.0e-49 199.5 201 51.7
C05p57970 Brassica napus HOM05D005441 ORTHO05D006879 3.4e-49 198.7 157 61.1
Sc19g0008470 Simmondsia chinensis HOM05D005441 ORTHO05D006879 3.4e-49 198.7 128 69.5
GSVIVG01033549001 Vitis vinifera HOM05D005441 ORTHO05D006879 3.4e-49 198.7 127 73.2
Psat6g118360 Pisum sativum HOM05D005441 ORTHO05D006879 7.7e-49 197.6 119 73.1
RcHm_v2.0_Chr3g0484281 Rosa chinensis HOM05D005441 ORTHO05D006879 7.7e-49 197.6 153 62.7
Sp3g08430 Schrenkiella parvula HOM05D005441 ORTHO05D006879 1.3e-48 196.8 124 69.4
Solyc04g016490.4 Solanum lycopersicum HOM05D005441 ORTHO05D006879 1.3e-48 196.8 119 74.8
BcaNung05908 Brassica carinata HOM05D005441 ORTHO05D006879 1.7e-48 196.4 156 59.6
BolC5t34452H Brassica oleracea HOM05D005441 ORTHO05D006879 1.7e-48 196.4 156 59.6
HanXRQChr14g0444951 Helianthus annuus HOM05D005441 ORTHO05D006879 1.7e-48 196.4 117 72.6
BcaNung05909 Brassica carinata HOM05D005441 ORTHO05D006879 2.9e-48 195.7 154 58.4
Prupe.7G050500 Prunus persica HOM05D005441 ORTHO05D006879 5.0e-48 194.9 128 69.5
TPR.G13795 Trifolium pratense HOM05D005441 ORTHO05D006879 5.0e-48 194.9 128 68.8
Sopen04g008570 Solanum pennellii HOM05D005441 ORTHO05D006879 6.5e-48 194.5 119 73.9
Aa31LG3G2690 Aethionema arabicum HOM05D005441 ORTHO05D006879 8.5e-48 194.1 157 59.9
MD14G1080200 Malus domestica HOM05D005441 ORTHO05D006879 8.5e-48 194.1 164 59.8
PGSC0003DMG400012721 Solanum tuberosum HOM05D005441 ORTHO05D006879 8.5e-48 194.1 113 77.0
Nn7g36437 Nelumbo nucifera HOM05D005441 ORTHO05D006879 1.1e-47 193.7 163 58.3
Peaxi162Scf00130g00934 Petunia axillaris HOM05D005441 ORTHO05D006879 1.1e-47 193.7 113 77.9
Hund19127 Selenicereus undatus HOM05D005441 ORTHO05D006879 4.2e-47 191.8 127 68.5
Aqoxy2G00259 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 5.5e-47 191.4 121 70.2
CAN.G1237.6 Capsicum annuum HOM05D005441 ORTHO05D006879 9.4e-47 190.7 124 70.2
Aqoxy5G02961 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 2.1e-46 189.5 128 68.0
AT3G10150 Arabidopsis thaliana HOM05D005441 ORTHO05D006879 2.1e-46 189.5 120 69.2
COL.COLO4_21308 Corchorus olitorius HOM05D005441 ORTHO05D006879 2.1e-46 189.5 123 69.1
AL3G21480 Arabidopsis lyrata HOM05D005441 ORTHO05D006879 3.6e-46 188.7 120 67.5
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 4.7e-46 188.3 121 69.4
Migut.J01709 Erythranthe guttata HOM05D005441 ORTHO05D006879 7.9e-46 187.6 125 64.0
MBI19_g22482_MAGBIO Magnolia biondii HOM05D005441 ORTHO05D006879 7.9e-46 187.6 152 55.9
ECA238G2248 Erigeron canadensis HOM05D005441 ORTHO05D006879 1.0e-45 187.2 123 68.3
MSTRG.19833 Avicennia marina HOM05D005441 ORTHO05D006879 1.8e-45 186.4 125 65.6
AUR62028834 Chenopodium quinoa HOM05D005441 ORTHO05D006879 3.0e-45 185.7 119 69.7
Aqoxy1G03762 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 3.9e-45 185.3 121 67.8
THA.LOC104826947 Tarenaya hassleriana HOM05D005441 ORTHO05D006879 3.9e-45 185.3 127 65.4
PSO210G6175 Papaver somniferum HOM05D005441 ORTHO05D006879 5.1e-45 184.9 119 68.9
EL10Ac6g13153 Beta vulgaris HOM05D005441 ORTHO05D006879 8.8e-45 184.1 153 57.5
SEGI_17185 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 2.0e-44 183.0 113 70.8
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 2.6e-44 182.6 122 67.2
SalBow6G3742 Salvia bowleyana HOM05D005441 ORTHO05D006879 4.4e-44 181.8 153 54.9
Os01g0941800 Oryza sativa ssp. japonica HOM05D005441 ORTHO05D006879 7.4e-44 181.0 148 56.8
Lsat_1_v5_gn_2_65661 Lactuca sativa HOM05D005441 ORTHO05D006879 1.7e-43 179.9 113 69.0
Carub.0003s0930 Capsella rubella HOM05D005441 ORTHO05D006879 2.2e-43 179.5 116 65.5
AUR62026118 Chenopodium quinoa HOM05D005441 ORTHO05D006879 3.7e-43 178.7 125 66.4
PSO832G1452 Papaver somniferum HOM05D005441 ORTHO05D006879 8.2e-43 177.6 106 72.6
SGA_v2.0_scaffold105G30361 Striga asiatica HOM05D005441 ORTHO05D006879 1.8e-42 176.4 140 55.7
Ah.04g151360 Amaranthus hybridus HOM05D005441 ORTHO05D006879 9.1e-42 174.1 119 65.5
HPP92_014156 Vanilla planifolia HOM05D005441 ORTHO05D006879 9.1e-42 174.1 113 68.1
MELO3C009811.2 Cucumis melo HOM05D005441 ORTHO05D006879 1.6e-41 173.3 117 67.5
HPP92_014176 Vanilla planifolia HOM05D005441 ORTHO05D006879 2.0e-41 172.9 113 67.3
CsaV3_3G040780 Cucumis sativus L. HOM05D005441 ORTHO05D006879 2.6e-41 172.6 126 62.7
Sed0017425 Sechium edule HOM05D005441 ORTHO05D006879 2.9e-40 169.1 125 62.4
EL10Ac3g07155 Beta vulgaris HOM05D005441 ORTHO05D006879 2.5e-39 166.0 109 70.6
Thhalv10020902m.g Eutrema salsugineum HOM05D005441 ORTHO05D006879 1.2e-38 163.7 156 49.4
Zm00001eb141530 Zea mays HOM05D005441 ORTHO05D006879 1.6e-38 163.3 140 52.9
Nitab4.5_0000826g0160 Nicotiana tabacum HOM05D005441 ORTHO05D006879 2.3e-37 159.5 110 66.4
SEGI_21032 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 7.0e-34 147.9 102 65.7
SMO147G0304 Selaginella moellendorffii HOM05D005441 ORTHO05D006879 9.1e-34 147.5 108 60.2
Nitab4.5_0001618g0230 Nicotiana tabacum HOM05D005441 ORTHO05D006879 1.2e-33 147.1 148 52.0
unitig_22.g6054 Utricularia gibba HOM05D001412 ORTHO05D002473 2.1e-30 136.3 92 67.4
QL05p004537 Quercus lobata HOM05D005441 ORTHO05D006879 2.7e-30 136.0 75 81.3
arahy.Tifrunner.gnm1.ann1.L13VJ0 Arachis hypogaea HOM05D005441 ORTHO05D006879 3.0e-29 132.5 77 74.0
Mapoly0006s0192 Marchantia polymorpha HOM05D005441 ORTHO05D006879 3.0e-29 132.5 118 54.2
MD12G1085300 Malus domestica HOM05D005441 ORTHO05D006879 1.5e-28 130.2 75 74.7
AUR62024526 Chenopodium quinoa HOM05D005441 ORTHO05D006879 1.3e-27 127.1 87 69.0
SalBow6G7142 Salvia bowleyana HOM05D005441 ORTHO05D006879 1.3e-27 127.1 75 66.7
Aqoxy3G01901 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 8.3e-27 124.4 80 70.0
ATR0721G128 Amborella trichopoda HOM05D005441 ORTHO05D006879 1.5e-23 113.6 79 60.8
Ca_14293_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 8.0e-22 107.8 60 70.0
SalBow6G6697 Salvia bowleyana HOM05D005441 ORTHO05D006879 2.6e-20 102.8 60 63.3
Ca_27959_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 2.9e-16 89.4 54 75.9
Pp3c1_39520 Physcomitrium patens HOM05D005441 ORTHO05D006879 6.6e-16 88.2 80 56.2
Zm00001eb311530 Zea mays HOM05D005441 ORTHO05D006879 1.9e-15 86.7 66 60.6
FAN09G3009 Fragaria x ananassa HOM05D005441 ORTHO05D006879 1.0e-13 80.9 70 55.7
ClCG10G015640 Citrullus lanatus HOM05D005441 ORTHO05D006879 1.4e-13 80.5 51 68.6
SalBow6G5479 Salvia bowleyana HOM05D005441 ORTHO05D006879 1.2e-12 77.4 51 66.7
Aqoxy1G03071 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 3.2e-10 69.3 45 62.2
Zm00001eb345340 Zea mays HOM05D005441 ORTHO05D006879 2.0e-09 66.6 126 30.2
ATR0721G055 Amborella trichopoda HOM05D005441 ORTHO05D006879 3.9e-08 62.4 87 39.1
Zm00001eb273010 Zea mays HOM05D002074 ORTHO05D002164 5.0e-08 62.0 118 33.1
GSVIVG01029309001 Vitis vinifera HOM05D002074 ORTHO05D002164 8.6e-08 61.2 96 37.5
Mapoly0108s0065 Marchantia polymorpha HOM05D002074 ORTHO05D002164 2.5e-07 59.7 134 29.1
Migut.J00791 Erythranthe guttata HOM05D002074 ORTHO05D002164 5.6e-07 58.5 139 30.2
vmacro05992 Vaccinium macrocarpon HOM05D002074 ORTHO05D002164 5.6e-07 58.5 103 33.0
Sc10g0004830 Simmondsia chinensis HOM05D002074 ORTHO05D002164 7.3e-07 58.2 133 34.6
Gohir.D04G007400 Gossypium hirsutum HOM05D002074 ORTHO05D002164 9.5e-07 57.8 103 36.9
Gorai.012G009100 Gossypium raimondii HOM05D002074 ORTHO05D002164 9.5e-07 57.8 103 36.9
SMO334G0006 Selaginella moellendorffii HOM05D002074 ORTHO05D002164 9.5e-07 57.8 105 35.2
Os06g0699200 Oryza sativa ssp. japonica HOM05D002074 ORTHO05D002164 1.2e-06 57.4 104 34.6
MSTRG.5938 Avicennia marina HOM05D002074 ORTHO05D002164 1.6e-06 57.0 103 34.0
Dinv25453 Davidia involucrata HOM05D002074 ORTHO05D002164 1.6e-06 57.0 103 33.0
SGA_v2.0_scaffold112G31603 Striga asiatica HOM05D002074 ORTHO05D002164 1.6e-06 57.0 103 33.0
TPR.G7567 Trifolium pratense HOM05D002074 ORTHO05D002164 1.6e-06 57.0 134 26.9
A10p14490 Brassica napus HOM05D002074 ORTHO05D002164 2.1e-06 56.6 103 33.0
C03p63490 Brassica napus HOM05D002074 ORTHO05D002164 2.1e-06 56.6 127 30.7
BraA10t43539Z Brassica rapa HOM05D002074 ORTHO05D002164 2.1e-06 56.6 103 33.0
Lsat_1_v5_gn_4_158140 Lactuca sativa HOM05D002074 ORTHO05D002164 2.1e-06 56.6 122 32.8
Rhsim03G0267400 Rhododendron simsii HOM05D002074 ORTHO05D002164 2.1e-06 56.6 103 32.0
BolC3t18602H Brassica oleracea HOM05D002074 ORTHO05D002164 2.8e-06 56.2 127 30.7
Gohir.A05G408100 Gossypium hirsutum HOM05D002074 ORTHO05D002164 2.8e-06 56.2 103 35.9
Cc06_g17480 Coffea canephora HOM05D002074 ORTHO05D002164 3.6e-06 55.8 118 28.8
MD07G1164800 Malus domestica HOM05D002074 ORTHO05D002164 3.6e-06 55.8 107 29.9
Medtr2g038080 Medicago truncatula HOM05D002074 ORTHO05D002164 3.6e-06 55.8 134 27.6
Nitab4.5_0004784g0020 Nicotiana tabacum HOM05D002074 ORTHO05D002164 3.6e-06 55.8 117 28.2
Pp3c13_7530 Physcomitrium patens HOM05D002074 ORTHO05D002164 3.6e-06 55.8 93 39.8
QL08p048141 Quercus lobata HOM05D002074 ORTHO05D002164 3.6e-06 55.8 106 33.0
BolC9t57747H Brassica oleracea HOM05D002074 ORTHO05D002164 4.7e-06 55.5 103 32.0
Cfa013459 Carpinus fangiana HOM05D002074 ORTHO05D002164 4.7e-06 55.5 103 33.0
CDE09G0410 Ceratophyllum demersum HOM05D002074 ORTHO05D002164 4.7e-06 55.5 137 27.7
Prupe.1G074200 Prunus persica HOM05D002074 ORTHO05D002164 4.7e-06 55.5 136 28.7
BcaC04g19997 Brassica carinata HOM05D002074 ORTHO05D002164 6.2e-06 55.1 103 32.0
BcaC04g20000 Brassica carinata HOM05D002074 ORTHO05D002164 6.2e-06 55.1 103 32.0
C09p48950 Brassica napus HOM05D002074 ORTHO05D002164 6.2e-06 55.1 103 32.0
Ca_02114_v3 Cicer arietinum L. HOM05D002074 ORTHO05D002164 6.2e-06 55.1 103 30.1
COL.COLO4_06922 Corchorus olitorius HOM05D002074 ORTHO05D002164 6.2e-06 55.1 103 35.0
Hma1.2p1_0235F.1_g098710 Hydrangea macrophylla HOM05D002074 ORTHO05D002164 6.2e-06 55.1 138 27.5
QL08p048157 Quercus lobata HOM05D002074 ORTHO05D002164 6.2e-06 55.1 98 34.7
Ah.14g085360 Amaranthus hybridus HOM05D002074 ORTHO05D002164 8.0e-06 54.7 96 34.4
Haze_22033 Corylus avellana HOM05D002074 ORTHO05D002164 8.0e-06 54.7 103 32.0
Haze_22036 Corylus avellana HOM05D002074 ORTHO05D002164 8.0e-06 54.7 103 32.0


User provided reference genes

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