Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 2.9e-84 315.5 195 100.0
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 1.2e-82 310.1 195 99.0
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 2.9e-39 166.0 207 56.0
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 5.1e-36 155.2 202 58.4
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 1.2e-34 150.6 196 62.2
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 7.6e-32 141.4 196 60.7
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 7.6e-32 141.4 196 60.7
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 3.8e-31 139.0 196 58.7
Duzib264G0973 Durio zibethinus HOM05D001418 ORTHO05D003753 8.4e-23 111.3 196 40.8
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 3.5e-21 105.9 199 43.2
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 8.7e-20 101.3 197 41.1
Duzib187G1961 Durio zibethinus HOM05D001418 ORTHO05D003753 1.1e-19 100.9 199 38.7
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 2.5e-19 99.8 198 35.9
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 5.6e-19 98.6 197 41.6
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 9.6e-19 97.8 197 34.5
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 1.6e-18 97.1 87 50.6
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 4.8e-18 95.5 85 55.3
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 6.2e-18 95.1 112 50.0
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 8.1e-18 94.7 101 47.5
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 1.4e-17 94.0 199 39.2
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 2.4e-17 93.2 84 56.0
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 4.0e-17 92.4 88 54.5
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 4.0e-17 92.4 88 54.5
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 6.9e-17 91.7 77 55.8
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 9.0e-17 91.3 212 38.7
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 1.2e-16 90.9 186 36.6
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 1.2e-16 90.9 108 44.4
AT4G30770 Arabidopsis thaliana HOM05D001418 ORTHO05D003753 2.6e-16 89.7 198 34.3
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 3.4e-16 89.4 77 55.8
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 4.5e-16 89.0 194 36.6
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 4.5e-16 89.0 77 50.6
CARHR238610 Cardamine hirsuta HOM05D001418 ORTHO05D003753 5.8e-16 88.6 196 34.2
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 5.8e-16 88.6 193 35.2
AL7G21370 Arabidopsis lyrata HOM05D001418 ORTHO05D003753 9.9e-16 87.8 197 33.5
C01p08160 Brassica napus HOM05D001418 ORTHO05D003753 9.9e-16 87.8 195 35.4
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 1.3e-15 87.4 71 59.2
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 1.3e-15 87.4 139 37.4
THA.LOC104804459 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 1.3e-15 87.4 94 51.1
BcaC09g51866 Brassica carinata HOM05D001418 ORTHO05D003753 2.2e-15 86.7 195 34.9
A01p07400 Brassica napus HOM05D001418 ORTHO05D003753 2.2e-15 86.7 195 34.9
BolC1t00803H Brassica oleracea HOM05D001418 ORTHO05D003753 2.2e-15 86.7 195 34.9
BraA01t00689Z Brassica rapa HOM05D001418 ORTHO05D003753 2.2e-15 86.7 195 34.9
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 2.9e-15 86.3 69 53.6
Thhalv10027257m.g Eutrema salsugineum HOM05D001418 ORTHO05D003753 2.9e-15 86.3 198 34.3
Gohir.A11G057300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.8e-15 85.9 77 49.4
Gohir.D11G061300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.8e-15 85.9 77 49.4
Gorai.007G066200 Gossypium raimondii HOM05D001418 ORTHO05D003753 4.9e-15 85.5 77 49.4
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 6.4e-15 85.1 191 31.4
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 6.4e-15 85.1 194 41.2
THA.LOC104804402 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 6.4e-15 85.1 194 34.0
BcaNung04827 Brassica carinata HOM05D001418 ORTHO05D003753 8.4e-15 84.7 195 34.4
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 1.1e-14 84.3 81 46.9
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 1.4e-14 84.0 75 49.3
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 1.4e-14 84.0 101 44.6
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.4e-14 84.0 75 45.3
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 1.4e-14 84.0 97 48.5
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 1.9e-14 83.6 76 52.6
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 2.4e-14 83.2 192 30.7
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 3.2e-14 82.8 68 55.9
Gohir.D10G108200 Gossypium hirsutum HOM05D001418 ORTHO05D003753 5.5e-14 82.0 97 45.4
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 7.1e-14 81.6 94 45.7
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 7.1e-14 81.6 95 42.1
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 7.1e-14 81.6 97 48.5
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 7.1e-14 81.6 97 48.5
A03p60290 Brassica napus HOM05D001418 ORTHO05D003753 9.3e-14 81.3 194 33.0
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 9.3e-14 81.3 85 45.9
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 9.3e-14 81.3 68 48.5
BcaNung01562 Brassica carinata HOM05D001418 ORTHO05D003753 1.2e-13 80.9 194 33.5
BcaNung02743 Brassica carinata HOM05D001418 ORTHO05D003753 1.2e-13 80.9 194 33.5
C07p58200 Brassica napus HOM05D001418 ORTHO05D003753 1.2e-13 80.9 194 33.5
BolC7t46274H Brassica oleracea HOM05D001418 ORTHO05D002038 1.2e-13 80.9 194 33.5
BraA03t15071Z Brassica rapa HOM05D001418 ORTHO05D003753 1.2e-13 80.9 194 33.5
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 1.2e-13 80.9 198 37.4
Sp7g28640 Schrenkiella parvula HOM05D001418 ORTHO05D003753 1.2e-13 80.9 194 35.6
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 1.2e-13 80.9 202 36.1
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 1.6e-13 80.5 192 34.9
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.6e-13 80.5 92 42.4
Gorai.011G118700 Gossypium raimondii HOM05D001418 ORTHO05D003753 3.5e-13 79.3 195 31.3
Carub.0007s0979 Capsella rubella HOM05D001418 ORTHO05D003753 7.9e-13 78.2 193 32.1
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 1.3e-12 77.4 93 49.5
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 1.3e-12 77.4 78 46.2
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 1.8e-12 77.0 95 49.5
Gohir.A10G157222 Gossypium hirsutum HOM05D001418 ORTHO05D003753 1.8e-12 77.0 195 30.8
Sed0004234 Sechium edule HOM05D001418 ORTHO05D003753 3.9e-12 75.9 69 50.7
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 6.7e-12 75.1 83 42.2
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 8.7e-12 74.7 60 48.3
Zm00001eb202060 Zea mays HOM05D001418 ORTHO05D003753 1.5e-11 73.9 64 50.0
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.9e-11 73.6 66 51.5
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 1.9e-11 73.6 92 50.0
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 1.9e-11 73.6 93 43.0
BcaB03g12658 Brassica carinata HOM05D001418 ORTHO05D003753 2.5e-11 73.2 193 32.1
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 2.5e-11 73.2 163 33.1
Zm00001eb408450 Zea mays HOM05D001418 ORTHO05D003753 5.6e-11 72.0 193 32.1
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 9.6e-11 71.2 190 34.2
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 1.3e-10 70.9 72 45.8
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 2.1e-10 70.1 65 41.5
BcaC01g01138 Brassica carinata HOM05D001418 ORTHO05D003753 3.7e-10 69.3 193 32.1
C03p88500 Brassica napus HOM05D001418 ORTHO05D003753 3.7e-10 69.3 193 32.1
BolC3t21160H Brassica oleracea HOM05D001418 ORTHO05D003753 3.7e-10 69.3 193 32.1
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 3.7e-10 69.3 95 42.1
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 3.7e-10 69.3 68 44.1
A08p19100 Brassica napus HOM05D001418 ORTHO05D003753 4.8e-10 68.9 84 45.2
BraA08t33872Z Brassica rapa HOM05D001418 ORTHO05D003753 4.8e-10 68.9 84 45.2
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 8.2e-10 68.2 69 44.9
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 8.2e-10 68.2 66 43.9
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 8.2e-10 68.2 65 40.0
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 1.1e-09 67.8 78 43.6
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 1.1e-09 67.8 68 42.6
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 1.8e-09 67.0 192 30.7
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 3.1e-09 66.2 98 37.8
VMungo1309G0848 Vigna mungo HOM05D001418 ORTHO05D003753 3.1e-09 66.2 94 37.2
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 4.0e-09 65.9 125 33.6
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 6.9e-09 65.1 64 39.1
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 6.9e-09 65.1 192 28.1
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 1.2e-08 64.3 64 43.8
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 1.2e-08 64.3 65 38.5
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 1.2e-08 64.3 65 44.6
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 1.5e-08 63.9 152 32.9
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 2.0e-08 63.5 195 32.8
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 2.0e-08 63.5 204 33.8
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 2.6e-08 63.2 84 35.7
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 4.5e-08 62.4 57 43.9
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 5.8e-08 62.0 150 30.7
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 1.0e-07 61.2 195 28.2
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 1.7e-07 60.5 63 38.1
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.7e-07 60.5 91 34.1
RcHm_v2.0_Chr2g0122171 Rosa chinensis HOM05D001418 ORTHO05D003753 3.8e-07 59.3 53 49.1
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 6.5e-07 58.5 66 42.4
Aqoxy6G00297 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 1.1e-06 57.8 89 40.4
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 1.4e-06 57.4 67 38.8
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 2.5e-06 56.6 66 37.9
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 2.5e-06 56.6 63 46.0
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 3.2e-06 56.2 195 28.7
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 4.2e-06 55.8 195 28.7
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 4.2e-06 55.8 64 43.8
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 7.1e-06 55.1 80 36.2
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 7.1e-06 55.1 64 39.1
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 9.3e-06 54.7 47 46.8


User provided reference genes

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