Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p041489 Quercus lobata HOM05D005973 ORTHO05D007285 4.2e-89 331.6 208 100.0
Eucgr.C02463 Eucalyptus grandis HOM05D005973 ORTHO05D007285 3.9e-26 122.5 271 33.6
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 3.4e-22 109.4 106 50.0
AUR62026807 Chenopodium quinoa HOM05D005973 ORTHO05D007285 1.7e-21 107.1 111 46.8
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 2.9e-21 106.3 423 26.0
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 2.9e-21 106.3 106 50.0
AUR62037245 Chenopodium quinoa HOM05D005973 ORTHO05D007285 2.4e-20 103.2 111 45.9
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 3.2e-20 102.8 89 57.3
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 4.2e-20 102.4 109 45.9
Ca_09587_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 5.4e-20 102.1 300 28.7
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 1.6e-19 100.5 106 46.2
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 6.0e-19 98.6 84 57.1
ECA248G3068 Erigeron canadensis HOM05D005973 ORTHO05D007285 6.0e-19 98.6 105 44.8
Lsat_1_v5_gn_1_100901 Lactuca sativa HOM05D005973 ORTHO05D007285 1.0e-18 97.8 106 45.3
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 1.0e-18 97.8 84 57.1
RcHm_v2.0_Chr1g0319391 Rosa chinensis HOM05D005973 ORTHO05D007285 3.9e-18 95.9 65 66.2
QL05p089319 Quercus lobata HOM05D005973 ORTHO05D007285 5.1e-18 95.5 59 78.0
Hma1.2p1_0579F.1_g182710 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 6.6e-18 95.1 133 63.2
Hma1.2p1_0579F.1_g182720 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 6.6e-18 95.1 133 63.2
QL10p041196 Quercus lobata HOM05D005973 ORTHO05D007285 8.7e-18 94.7 59 78.0
FvH4_7g02120 Fragaria vesca HOM05D005973 ORTHO05D007285 1.1e-17 94.4 66 65.2
FAN06G2970 Fragaria x ananassa HOM05D005973 ORTHO05D007285 1.1e-17 94.4 66 65.2
Eucgr.J01726 Eucalyptus grandis HOM05D005973 ORTHO05D007285 1.9e-17 93.6 66 66.7
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 1.9e-17 93.6 133 37.6
FAN10G2343 Fragaria x ananassa HOM05D005973 ORTHO05D007285 2.5e-17 93.2 66 65.2
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 2.5e-17 93.2 66 65.2
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 2.5e-17 93.2 64 67.2
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 3.3e-17 92.8 83 51.8
Ca_09585_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 1.6e-16 90.5 64 67.2
TAR623G1146 Trochodendron aralioides HOM05D005973 ORTHO05D007285 1.6e-16 90.5 345 23.8
Ah.10g030910 Amaranthus hybridus HOM05D005973 ORTHO05D007285 2.1e-16 90.1 171 34.5
COL.COLO4_19343 Corchorus olitorius HOM05D005973 ORTHO05D007285 2.8e-16 89.7 151 36.4
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 6.2e-16 88.6 133 39.8
Prupe.2G027000 Prunus persica HOM05D005973 ORTHO05D007285 6.2e-16 88.6 133 38.3
Rhsim05G0126600 Rhododendron simsii HOM05D005973 ORTHO05D007285 6.2e-16 88.6 57 71.9
TAR623G1116 Trochodendron aralioides HOM05D005973 ORTHO05D007285 6.2e-16 88.6 227 32.2
Gohir.D06G164800 Gossypium hirsutum HOM05D005973 ORTHO05D007285 8.1e-16 88.2 133 39.8
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 8.1e-16 88.2 64 60.9
MD07G1026900 Malus domestica HOM05D005973 ORTHO05D007285 1.1e-15 87.8 133 36.8
Oeu027349.1 Olea europaea HOM05D005973 ORTHO05D007285 1.1e-15 87.8 60 66.7
Cfa002200 Carpinus fangiana HOM05D005973 ORTHO05D007285 1.4e-15 87.4 59 69.5
FAN03G2603 Fragaria x ananassa HOM05D005973 ORTHO05D007285 1.4e-15 87.4 57 68.4
Actinidia21529 Actinidia chinensis HOM05D005973 ORTHO05D007285 1.8e-15 87.0 133 60.2
Sabra03G0150000 Salix brachista HOM05D005973 ORTHO05D007285 1.8e-15 87.0 59 67.8
Gorai.010G192200 Gossypium raimondii HOM05D005973 ORTHO05D007285 3.1e-15 86.3 133 39.1
arahy.Tifrunner.gnm1.ann1.P50PF0 Arachis hypogaea HOM05D005973 ORTHO05D007285 5.3e-15 85.5 133 37.6
Ciclev10030824m.g Citrus clementina HOM05D005973 ORTHO05D007285 5.3e-15 85.5 142 35.2
Potri.003G203100 Populus trichocarpa HOM05D005973 ORTHO05D007285 5.3e-15 85.5 59 66.1
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 9.0e-15 84.7 142 36.6
VMungo1080G0196 Vigna mungo HOM05D005973 ORTHO05D007285 9.0e-15 84.7 55 69.1
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 1.2e-14 84.3 186 34.4
arahy.Tifrunner.gnm1.ann1.9Z0TAG Arachis hypogaea HOM05D005973 ORTHO05D007285 1.2e-14 84.3 59 66.1
Carub.0007s2070 Capsella rubella HOM05D005973 ORTHO05D007285 1.2e-14 84.3 142 35.9
Lalb_Chr25g0282721 Lupinus albus HOM05D005973 ORTHO05D007285 1.2e-14 84.3 59 67.8
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 1.2e-14 84.3 144 35.4
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 1.2e-14 84.3 59 66.1
AL7G33400 Arabidopsis lyrata HOM05D005973 ORTHO05D007285 2.6e-14 83.2 142 37.3
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 2.6e-14 83.2 192 31.8
Glyma.06G236700 Glycine max HOM05D005973 ORTHO05D007285 2.6e-14 83.2 54 68.5
Glyma.20G097200 Glycine max HOM05D005973 ORTHO05D007285 2.6e-14 83.2 54 68.5
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 2.6e-14 83.2 97 41.2
Gohir.A06G158900 Gossypium hirsutum HOM05D005973 ORTHO05D007285 3.4e-14 82.8 134 38.1
Psat7g241480 Pisum sativum HOM05D005973 ORTHO05D007285 4.5e-14 82.4 54 68.5
SalBow6G5404 Salvia bowleyana HOM05D005973 ORTHO05D007285 5.8e-14 82.0 183 44.8
TPR.G2735 Trifolium pratense HOM05D005973 ORTHO05D007285 5.8e-14 82.0 142 35.9
Glyma.20G115000 Glycine max HOM05D005973 ORTHO05D007285 7.6e-14 81.6 54 66.7
Lj3g0002161 Lotus japonicus HOM05D005973 ORTHO05D007285 7.6e-14 81.6 59 67.8
Phvul.005G033500 Phaseolus vulgaris HOM05D005973 ORTHO05D007285 7.6e-14 81.6 54 66.7
ATR0820G217 Amborella trichopoda HOM05D005973 ORTHO05D007285 9.9e-14 81.3 59 62.7
MSTRG.27162 Avicennia marina HOM05D005973 ORTHO05D007285 2.2e-13 80.1 133 33.1
Dinv03571 Davidia involucrata HOM05D005973 ORTHO05D007285 2.2e-13 80.1 133 57.1
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 2.2e-13 80.1 57 64.9
Thecc.10G003600 Theobroma cacao HOM05D005973 ORTHO05D007285 2.9e-13 79.7 133 37.6
CDE07G0106 Ceratophyllum demersum HOM05D005973 ORTHO05D007285 3.8e-13 79.3 133 31.6
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 3.8e-13 79.3 133 57.1
BcaC09g51316 Brassica carinata HOM05D005973 ORTHO05D007285 4.9e-13 79.0 55 65.5
C01p14480 Brassica napus HOM05D005973 ORTHO05D007285 4.9e-13 79.0 55 65.5
BolC1t01403H Brassica oleracea HOM05D005973 ORTHO05D007285 4.9e-13 79.0 55 65.5
Ca_25879_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 4.9e-13 79.0 142 34.5
MD02G1297100 Malus domestica HOM05D005973 ORTHO05D007285 4.9e-13 79.0 53 69.8
TAR624G0512 Trochodendron aralioides HOM05D005973 ORTHO05D007285 4.9e-13 79.0 57 63.2
AT4G20740 Arabidopsis thaliana HOM05D005973 ORTHO05D007285 6.4e-13 78.6 142 34.5
Thhalv10024515m.g Eutrema salsugineum HOM05D005973 ORTHO05D007285 8.4e-13 78.2 133 36.8
Eucgr.C02304 Eucalyptus grandis HOM05D005973 ORTHO05D007285 1.1e-12 77.8 201 29.4
BcaNung04156 Brassica carinata HOM05D005973 ORTHO05D007285 1.4e-12 77.4 53 67.9
Migut.N01822 Erythranthe guttata HOM05D005973 ORTHO05D007285 1.4e-12 77.4 133 33.8
Nitab4.5_0001775g0060 Nicotiana tabacum HOM05D005973 ORTHO05D007285 1.4e-12 77.4 142 31.7
SGA_v2.0_scaffold354G49737 Striga asiatica HOM05D005973 ORTHO05D007285 1.4e-12 77.4 57 59.6
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 3.2e-12 76.3 56 62.5
Sp7g18820 Schrenkiella parvula HOM05D005973 ORTHO05D007285 7.1e-12 75.1 142 33.1
Os07g0179000 Oryza sativa ssp. japonica HOM05D005973 ORTHO05D007285 9.3e-12 74.7 186 26.9
Solyc01g068180.3 Solanum lycopersicum HOM05D005973 ORTHO05D007285 9.3e-12 74.7 133 31.6
SHI03959 Sapria himalayana HOM05D005973 ORTHO05D007285 1.2e-11 74.3 118 41.5
Sopen01g030120 Solanum pennellii HOM05D005973 ORTHO05D007285 1.2e-11 74.3 133 31.6
BraA01t01158Z Brassica rapa HOM05D005973 ORTHO05D007285 1.6e-11 73.9 52 63.5
CANSAT80G0799 Cannabis sativa HOM05D005973 ORTHO05D007285 1.6e-11 73.9 133 59.4
ClCG01G007570 Citrullus lanatus HOM05D005973 ORTHO05D007285 1.6e-11 73.9 172 28.5
THA.LOC104812083 Tarenaya hassleriana HOM05D005973 ORTHO05D007285 1.6e-11 73.9 142 32.4
Aa31LG9G8720 Aethionema arabicum HOM05D005973 ORTHO05D007285 2.1e-11 73.6 59 61.0
CSS0008088 Camellia sinensis var. sinensis HOM05D005973 ORTHO05D007285 2.1e-11 73.6 52 61.5
CSS0029678 Camellia sinensis var. sinensis HOM05D005973 ORTHO05D007285 2.1e-11 73.6 52 61.5
CARHR227290 Cardamine hirsuta HOM05D005973 ORTHO05D007285 3.5e-11 72.8 142 32.4
Ca_24341_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 4.6e-11 72.4 59 57.6
Nn3g17081 Nelumbo nucifera HOM05D005973 ORTHO05D007285 6.0e-11 72.0 50 64.0
Nn3g17082 Nelumbo nucifera HOM05D005973 ORTHO05D007285 6.0e-11 72.0 50 64.0
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 7.9e-11 71.6 50 62.0
A01p12160 Brassica napus HOM05D005973 ORTHO05D007285 1.0e-10 71.2 50 64.0
CAN.G410.36 Capsicum annuum HOM05D005973 ORTHO05D007285 1.0e-10 71.2 133 30.8
Ca_24344_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 1.0e-10 71.2 59 57.6
PGR031G1457 Punica granatum HOM05D005973 ORTHO05D007285 1.0e-10 71.2 133 31.6
Sed0021022 Sechium edule HOM05D005973 ORTHO05D007285 1.8e-10 70.5 54 59.3
MELO3C005140.2 Cucumis melo HOM05D005973 ORTHO05D007285 2.3e-10 70.1 174 29.3
Aa31LG6G2840 Aethionema arabicum HOM05D005973 ORTHO05D007285 3.0e-10 69.7 59 55.9
CsaV3_5G024580 Cucumis sativus L. HOM05D005973 ORTHO05D007285 1.1e-09 67.8 172 27.9
Zm00001eb301300 Zea mays HOM05D005973 ORTHO05D007285 2.5e-09 66.6 60 46.7
Oeu006490.1 Olea europaea HOM05D005973 ORTHO05D007285 3.3e-09 66.2 176 30.7
SEGI_06598 Sequoiadendron giganteum HOM05D005973 ORTHO05D007285 2.1e-08 63.5 169 46.2
HPP92_000751 Vanilla planifolia HOM05D005973 ORTHO05D007285 2.1e-08 63.5 65 52.3
ATR0807G010 Amborella trichopoda HOM05D006556 ORTHO05D008146 4.8e-08 62.4 107 33.6
arahy.Tifrunner.gnm1.ann1.QIT2C2 Arachis hypogaea HOM05D002453 ORTHO05D008746 6.2e-08 62.0 112 31.2
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 1.1e-07 61.2 111 34.2
Psat4g140040 Pisum sativum HOM05D002453 ORTHO05D008746 1.1e-07 61.2 106 32.1
THA.LOC104810436 Tarenaya hassleriana HOM05D002453 ORTHO05D008746 2.4e-07 60.1 118 32.2
Aqoxy6G01988 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 3.1e-07 59.7 107 31.8
Hma1.2p1_1276F.1_g272060 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 4.0e-07 59.3 112 32.1
Nitab4.5_0000846g0020 Nicotiana tabacum HOM05D006556 ORTHO05D008146 4.0e-07 59.3 107 31.8
Nitab4.5_0001056g0080 Nicotiana tabacum HOM05D006556 ORTHO05D008146 4.0e-07 59.3 107 31.8
Rhsim10G0194700 Rhododendron simsii HOM05D006556 ORTHO05D008146 4.0e-07 59.3 107 32.7
THA.LOC104809641 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 4.0e-07 59.3 106 30.2
Actinidia29766 Actinidia chinensis HOM05D000424 ORTHO05D000355 5.3e-07 58.9 106 32.1
Cfa000760 Carpinus fangiana HOM05D006556 ORTHO05D008146 5.3e-07 58.9 109 30.3
PGSC0003DMG400006820 Solanum tuberosum HOM05D005973 ORTHO05D007285 5.3e-07 58.9 49 53.1
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 6.9e-07 58.5 110 32.7
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 9.0e-07 58.2 104 30.8
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 1.2e-06 57.8 100 33.0
Lj2g0027972 Lotus japonicus HOM05D006556 ORTHO05D008146 1.2e-06 57.8 107 31.8
Ciclev10000789m.g Citrus clementina HOM05D000424 ORTHO05D000355 1.5e-06 57.4 106 31.1
Phvul.009G019800 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 1.5e-06 57.4 106 31.1
Solyc09g061760.1 Solanum lycopersicum HOM05D006556 ORTHO05D008146 1.5e-06 57.4 109 30.3
PGSC0003DMG400012059 Solanum tuberosum HOM05D006556 ORTHO05D008146 1.5e-06 57.4 109 30.3
vmacro20622 Vaccinium macrocarpon HOM05D006556 ORTHO05D008146 1.5e-06 57.4 107 31.8
Cpa.g.sc26.266 Carica papaya HOM05D000424 ORTHO05D000355 2.0e-06 57.0 106 30.2
PGR119G0082 Punica granatum HOM05D006556 ORTHO05D008146 2.0e-06 57.0 109 30.3
Rhsim10G0193200 Rhododendron simsii HOM05D006556 ORTHO05D008146 2.0e-06 57.0 107 32.7
SMO367G1176 Selaginella moellendorffii HOM05D009701 ORTHO05D000003 2.0e-06 57.0 98 30.6
CARHR043560 Cardamine hirsuta HOM05D002453 ORTHO05D008746 2.6e-06 56.6 112 31.2
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 2.6e-06 56.6 108 30.6
Lalb_Chr23g0266001 Lupinus albus HOM05D000424 ORTHO05D000355 2.6e-06 56.6 106 32.1
Rhsim01G0024000 Rhododendron simsii HOM05D006556 ORTHO05D008146 2.6e-06 56.6 107 32.7
Sopen09g024760 Solanum pennellii HOM05D006556 ORTHO05D008146 2.6e-06 56.6 109 29.4
TAR376G0085 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.6e-06 56.6 107 32.7
AL3G50480 Arabidopsis lyrata HOM05D006556 ORTHO05D008146 3.4e-06 56.2 109 31.2
Cpa.g.sc6.362 Carica papaya HOM05D006556 ORTHO05D008146 3.4e-06 56.2 105 31.4
Sc03g0004000 Simmondsia chinensis HOM05D006556 ORTHO05D008146 3.4e-06 56.2 109 32.1
Thecc.01G004300 Theobroma cacao HOM05D006556 ORTHO05D008146 3.4e-06 56.2 107 29.9
FvH4_3g01610 Fragaria vesca HOM05D000001 ORTHO05D009952 4.5e-06 55.8 99 33.3
Gohir.D04G192300 Gossypium hirsutum HOM05D006556 ORTHO05D008146 4.5e-06 55.8 106 31.1
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 4.5e-06 55.8 108 26.9
TPR.G38108 Trifolium pratense HOM05D000424 ORTHO05D000355 4.5e-06 55.8 106 31.1
TWI75G0181 Tripterygium wilfordii HOM05D000001 ORTHO05D009961 4.5e-06 55.8 101 29.7
TAR628G0602 Trochodendron aralioides HOM05D006556 ORTHO05D008146 4.5e-06 55.8 109 30.3
arahy.Tifrunner.gnm1.ann1.FC3EP2 Arachis hypogaea HOM05D006556 ORTHO05D008146 5.8e-06 55.5 108 32.4
arahy.Tifrunner.gnm1.ann1.R78M2C Arachis hypogaea HOM05D006556 ORTHO05D008146 5.8e-06 55.5 108 32.4
Carub.0003s3161 Capsella rubella HOM05D006556 ORTHO05D008146 5.8e-06 55.5 109 30.3
Ciclev10026953m.g Citrus clementina HOM05D006556 ORTHO05D008146 5.8e-06 55.5 109 27.5
FAN21G2997 Fragaria x ananassa HOM05D000001 ORTHO05D009952 5.8e-06 55.5 103 32.0
Glyma.06G020900 Glycine max HOM05D000424 ORTHO05D000355 5.8e-06 55.5 106 30.2
Hma1.2p1_1276F.1_g272100 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 5.8e-06 55.5 112 31.2
TWI09G0542 Tripterygium wilfordii HOM05D006556 ORTHO05D008146 5.8e-06 55.5 108 29.6
VMungo1215G1597 Vigna mungo HOM05D006556 ORTHO05D008146 5.8e-06 55.5 107 31.8
VMungo1309G1540 Vigna mungo HOM05D000424 ORTHO05D000355 5.8e-06 55.5 106 30.2
BcaB03g16520 Brassica carinata HOM05D006556 ORTHO05D008146 7.6e-06 55.1 110 31.8
CAN.G630.84 Capsicum annuum HOM05D006556 ORTHO05D008146 7.6e-06 55.1 109 31.2
Duzib147G0761 Durio zibethinus HOM05D006556 ORTHO05D008146 7.6e-06 55.1 107 29.9
Nn1g07956 Nelumbo nucifera HOM05D000424 ORTHO05D000355 7.6e-06 55.1 107 30.8
QL01p002364 Quercus lobata HOM05D006556 ORTHO05D008146 7.6e-06 55.1 107 29.0
AT1G20300 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 9.9e-06 54.7 106 29.2
CSS0039062 Camellia sinensis var. sinensis HOM05D006556 ORTHO05D008146 9.9e-06 54.7 107 33.6
Glyma.01G158100 Glycine max HOM05D006556 ORTHO05D008146 9.9e-06 54.7 107 30.8
Gorai.012G187700 Gossypium raimondii HOM05D006556 ORTHO05D008146 9.9e-06 54.7 106 30.2
Lalb_Chr05g0214861 Lupinus albus HOM05D006556 ORTHO05D008146 9.9e-06 54.7 107 30.8
Phvul.002G117300 Phaseolus vulgaris HOM05D006556 ORTHO05D008146 9.9e-06 54.7 107 30.8
Psat5g012240 Pisum sativum HOM05D000424 ORTHO05D000355 9.9e-06 54.7 106 30.2
RcHm_v2.0_Chr1g0326571 Rosa chinensis HOM05D006556 ORTHO05D008146 9.9e-06 54.7 109 29.4
TWI36G0926 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 9.9e-06 54.7 106 31.1


User provided reference genes

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