Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 1.6e-39 165.6 83 100.0
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 3.9e-38 161.0 83 96.4
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 9.7e-37 156.4 81 96.3
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 2.8e-36 154.8 82 93.9
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.4e-35 152.5 79 96.2
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 1.4e-35 152.5 79 96.2
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.4e-35 152.5 77 98.7
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.8e-35 152.1 77 97.4
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.8e-35 152.1 77 97.4
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 3.1e-35 151.4 77 97.4
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 3.1e-35 151.4 77 97.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 4.1e-35 151.0 77 97.4
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 4.1e-35 151.0 77 97.4
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 4.1e-35 151.0 77 97.4
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 4.1e-35 151.0 77 97.4
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 4.1e-35 151.0 79 93.7
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.1e-35 151.0 79 93.7
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.1e-35 151.0 79 93.7
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 5.3e-35 150.6 79 93.7
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 5.3e-35 150.6 79 93.7
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 5.3e-35 150.6 79 93.7
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 6.9e-35 150.2 79 92.4
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 6.9e-35 150.2 77 94.8
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.2e-34 149.4 79 92.4
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.2e-34 149.4 79 91.1
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.2e-34 149.4 79 91.1
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 1.2e-34 149.4 79 92.4
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.2e-34 149.4 79 92.4
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.5e-34 149.1 77 93.5
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.5e-34 149.1 77 94.8
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.5e-34 149.1 77 94.8
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 2.0e-34 148.7 79 91.1
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 2.0e-34 148.7 79 92.4
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 2.6e-34 148.3 79 91.1
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 2.6e-34 148.3 79 91.1
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.6e-34 148.3 79 91.1
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 2.6e-34 148.3 79 91.1
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.6e-34 148.3 77 93.5
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 4.5e-34 147.5 77 92.2
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 4.5e-34 147.5 77 92.2
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.5e-34 147.5 79 92.4
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 4.5e-34 147.5 79 93.7
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 4.5e-34 147.5 77 93.5
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.9e-34 147.1 77 92.2
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.9e-34 147.1 77 92.2
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 5.9e-34 147.1 77 92.2
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 5.9e-34 147.1 77 92.2
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 5.9e-34 147.1 77 93.5
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.9e-34 147.1 77 92.2
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 5.9e-34 147.1 77 92.2
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 7.7e-34 146.7 80 91.2
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 7.7e-34 146.7 77 94.8
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.7e-34 146.7 77 93.5
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 1.3e-33 146.0 77 92.2
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.3e-33 146.0 77 92.2
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.7e-33 145.6 77 90.9
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.7e-33 145.6 77 90.9
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.7e-33 145.6 77 90.9
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 2.2e-33 145.2 75 96.0
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 2.2e-33 145.2 77 93.5
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 2.9e-33 144.8 77 90.9
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.9e-33 144.8 77 90.9
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 3.8e-33 144.4 77 90.9
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 3.8e-33 144.4 77 92.2
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.8e-33 144.4 79 89.9
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 5.0e-33 144.1 79 89.9
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 6.5e-33 143.7 75 94.7
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 6.5e-33 143.7 80 87.5
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 8.5e-33 143.3 77 92.2
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 8.5e-33 143.3 79 88.6
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 8.5e-33 143.3 79 88.6
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.1e-32 142.9 80 87.5
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.1e-32 142.9 77 90.9
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 2.5e-32 141.7 82 84.1
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.5e-32 141.7 82 84.1
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.5e-32 141.7 78 92.3
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.5e-32 141.7 79 88.6
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 3.2e-32 141.4 77 89.6
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 3.2e-32 141.4 79 86.1
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 4.2e-32 141.0 79 84.8
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 4.2e-32 141.0 79 88.6
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 5.5e-32 140.6 79 87.3
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 5.5e-32 140.6 77 89.6
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 7.2e-32 140.2 77 88.3
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 7.2e-32 140.2 79 86.1
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 7.2e-32 140.2 77 88.3
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 9.4e-32 139.8 79 87.3
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 9.4e-32 139.8 77 87.0
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 9.4e-32 139.8 75 92.0
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 9.4e-32 139.8 77 84.4
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 2.1e-31 138.7 77 85.7
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 2.1e-31 138.7 79 86.1
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 2.7e-31 138.3 77 87.0
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 2.7e-31 138.3 77 87.0
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.6e-31 137.9 77 88.3
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.7e-31 137.5 78 87.2
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 4.7e-31 137.5 77 88.3
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 7.9e-31 136.7 73 89.0
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 7.9e-31 136.7 80 83.8
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 1.0e-30 136.3 78 85.9
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.4e-30 136.0 77 87.0
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.4e-30 136.0 78 85.9
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.4e-30 136.0 78 85.9
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 2.3e-30 135.2 77 81.8
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 3.9e-30 134.4 80 83.8
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 6.7e-30 133.7 77 84.4
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.1e-29 132.9 77 84.4
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.1e-29 132.9 77 84.4
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 1.5e-29 132.5 71 90.1
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.5e-29 132.5 77 80.5
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.0e-29 132.1 78 82.1
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 2.6e-29 131.7 76 82.9
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 2.6e-29 131.7 75 82.7
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 2.6e-29 131.7 71 90.1
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.7e-29 130.6 77 85.7
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 5.7e-29 130.6 77 85.7
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 7.4e-29 130.2 76 81.6
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 9.7e-29 129.8 77 79.2
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 2.2e-28 128.6 75 84.0
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 3.7e-28 127.9 78 80.8
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 2.4e-27 125.2 77 72.7
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 3.1e-27 124.8 77 71.4
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 5.3e-27 124.0 76 77.6
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 1.6e-26 122.5 70 84.3
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 2.0e-26 122.1 77 70.1
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.3e-25 119.4 69 87.0
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 5.0e-25 117.5 105 61.9
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.0e-22 109.8 57 93.0
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 1.8e-22 109.0 56 94.6
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 3.3e-21 104.8 70 62.9
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 5.7e-21 104.0 71 71.8
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.7e-20 102.4 53 90.6
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 1.7e-20 102.4 75 58.7
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.8e-19 99.0 56 83.9
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 4.1e-19 97.8 52 90.4
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.5e-16 89.4 84 51.2
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.5e-16 89.4 51 78.4
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 1.4e-14 82.8 45 84.4
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 1.2e-13 79.7 69 52.2
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 7.5e-13 77.0 56 62.5
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 6.3e-12 73.9 80 55.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 7.7e-10 67.0 78 44.9
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 9.4e-08 60.1 29 96.6


User provided reference genes

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