Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 5.6e-79 298.5 296 100.0
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 7.5e-31 138.7 105 86.7
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.4e-29 134.4 269 59.5
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 5.9e-28 129.0 255 53.3
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 3.6e-25 119.8 92 79.3
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.4e-24 117.9 87 79.3
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 6.8e-24 115.5 94 73.4
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 7.5e-23 112.1 100 65.0
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 7.5e-23 112.1 101 80.2
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.7e-22 110.9 81 81.5
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 4.8e-22 109.4 110 66.4
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 1.1e-21 108.2 84 75.0
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.4e-21 107.1 252 47.6
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 3.5e-20 103.2 89 76.4
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.0e-19 101.7 71 80.3
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 1.3e-19 101.3 73 80.8
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.3e-19 101.3 143 51.0
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.7e-19 100.9 89 69.7
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 2.9e-19 100.1 72 83.3
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.9e-19 100.1 91 69.2
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 3.8e-19 99.8 249 48.2
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.9e-18 97.4 249 64.3
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 2.5e-18 97.1 76 77.6
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.5e-18 97.1 269 47.6
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 3.2e-18 96.7 76 73.7
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.2e-18 96.3 111 66.7
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.2e-18 96.3 84 65.5
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 7.2e-18 95.5 88 70.5
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 9.5e-18 95.1 74 73.0
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 9.5e-18 95.1 70 81.4
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 1.2e-17 94.7 74 74.3
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 1.2e-17 94.7 90 64.4
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 1.2e-17 94.7 90 64.4
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 1.6e-17 94.4 114 57.0
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.1e-17 94.0 85 63.5
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.6e-17 93.2 95 62.1
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 3.6e-17 93.2 80 67.5
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 4.7e-17 92.8 85 67.1
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 4.7e-17 92.8 129 49.6
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 4.7e-17 92.8 71 77.5
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 6.1e-17 92.4 65 83.1
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.0e-16 91.7 91 62.6
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.4e-16 91.3 81 66.7
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 3.0e-16 90.1 76 65.8
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 4.0e-16 89.7 76 82.9
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 5.2e-16 89.4 135 48.9
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 5.2e-16 89.4 85 69.4
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 5.2e-16 89.4 109 56.9
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 8.8e-16 88.6 76 82.9
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 8.8e-16 88.6 75 73.3
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 1.5e-15 87.8 80 66.2
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.5e-15 87.8 74 70.3
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 2.0e-15 87.4 135 49.6
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 2.0e-15 87.4 83 61.4
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 2.0e-15 87.4 81 65.4
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 3.4e-15 86.7 82 68.3
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 4.4e-15 86.3 255 43.9
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 5.7e-15 85.9 77 63.6
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 5.7e-15 85.9 241 45.6
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 7.5e-15 85.5 78 64.1
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 7.5e-15 85.5 90 61.1
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 1.3e-14 84.7 255 53.7
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.7e-14 84.3 83 59.0
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.7e-14 84.3 82 61.0
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 2.2e-14 84.0 85 65.9
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 3.7e-14 83.2 141 48.9
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 4.9e-14 82.8 73 64.4
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 4.9e-14 82.8 87 59.8
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 6.3e-14 82.4 77 71.4
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 6.3e-14 82.4 254 46.1
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 6.3e-14 82.4 83 66.3
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 8.3e-14 82.0 131 45.0
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 8.3e-14 82.0 92 60.9
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.1e-13 81.6 145 47.6
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.4e-13 81.3 73 63.0
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.4e-13 81.3 74 64.9
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 3.1e-13 80.1 70 65.7
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 4.1e-13 79.7 63 77.8
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 5.4e-13 79.3 149 43.6
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 9.2e-13 78.6 120 46.7
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 1.2e-12 78.2 72 66.7
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.2e-12 78.2 78 62.8
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 2.0e-12 77.4 91 53.8
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.7e-12 77.0 84 58.3
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 3.5e-12 76.6 131 48.1
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 3.5e-12 76.6 114 48.2
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 4.5e-12 76.3 77 63.6
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 5.9e-12 75.9 81 64.2
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 5.9e-12 75.9 68 64.7
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 5.9e-12 75.9 229 57.6
Sabra19G0015000 Salix brachista HOM05D003347 ORTHO05D003821 1.7e-11 74.3 53 77.4
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 2.9e-11 73.6 61 65.6
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 3.8e-11 73.2 102 50.0
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 6.6e-11 72.4 108 48.1
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 8.6e-11 72.0 80 61.2
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 1.1e-10 71.6 61 68.9
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 1.5e-10 71.2 78 57.7
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 1.5e-10 71.2 77 58.4
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.9e-10 70.9 64 62.5
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 1.9e-10 70.9 67 62.7
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 2.5e-10 70.5 73 64.4
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 2.5e-10 70.5 113 48.7
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.6e-10 69.3 72 58.3
Ca_17010_v3 Cicer arietinum L. HOM05D003347 ORTHO05D003821 7.3e-10 68.9 98 63.3
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 1.2e-09 68.2 72 62.5
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 1.6e-09 67.8 48 79.2
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 1.6e-09 67.8 133 42.1
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 2.1e-09 67.4 74 59.5
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.1e-09 67.4 112 43.8
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 2.1e-09 67.4 57 68.4
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 4.7e-09 66.2 132 40.2
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 4.7e-09 66.2 62 64.5
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.7e-09 66.2 74 56.8
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 8.0e-09 65.5 84 52.4
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 8.0e-09 65.5 47 78.7
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 1.0e-08 65.1 239 41.8
AUR62000566 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.0e-08 65.1 41 87.8
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.0e-08 65.1 107 45.8
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 1.0e-08 65.1 81 51.9
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 1.4e-08 64.7 75 56.0
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 1.8e-08 64.3 73 56.2
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 2.3e-08 63.9 46 76.1
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 3.0e-08 63.5 72 55.6
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 3.0e-08 63.5 80 52.5
arahy.Tifrunner.gnm1.ann1.0YHR6E Arachis hypogaea HOM05D003347 ORTHO05D003821 4.0e-08 63.2 81 58.0
arahy.Tifrunner.gnm1.ann1.3X6E38 Arachis hypogaea HOM05D003347 ORTHO05D003821 4.0e-08 63.2 81 58.0
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 4.0e-08 63.2 55 72.7
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 5.2e-08 62.8 81 50.6
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 2.0e-07 60.8 73 56.2
Mapoly0020s0030 Marchantia polymorpha HOM05D003347 ORTHO05D003821 2.0e-07 60.8 51 64.7
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 2.6e-07 60.5 76 50.0
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 3.4e-07 60.1 59 62.7
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.4e-07 60.1 48 66.7
CARHR200100 Cardamine hirsuta HOM05D012923 ORTHO05D014747 4.4e-07 59.7 55 61.8
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 4.4e-07 59.7 98 43.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 5.7e-07 59.3 71 53.5
arahy.Tifrunner.gnm1.ann1.AG1RTL Arachis hypogaea HOM05D003347 ORTHO05D003821 7.5e-07 58.9 113 46.0
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 7.5e-07 58.9 41 78.0
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 1.3e-06 58.2 73 53.4
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.3e-06 58.2 90 46.7
Sabra01G0163000 Salix brachista HOM05D003347 ORTHO05D003821 1.3e-06 58.2 59 55.9
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 1.3e-06 58.2 46 69.6
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.7e-06 57.8 73 53.4
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.7e-06 57.8 88 46.6
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 2.2e-06 57.4 85 49.4
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.2e-06 57.4 43 69.8
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 2.2e-06 57.4 71 54.9
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 4.9e-06 56.2 86 48.8
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 4.9e-06 56.2 73 57.5
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 4.9e-06 56.2 73 56.2
CDE06G0340 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 6.4e-06 55.8 44 68.2
Os10g0214400 Oryza sativa ssp. japonica HOM05D003347 ORTHO05D003821 6.4e-06 55.8 88 43.2


User provided reference genes

Program Settings