Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p037295 Quercus lobata HOM05D004334 ORTHO05D004763 1.7e-52 209.1 112 100.0
QL06p052479 Quercus lobata HOM05D004334 ORTHO05D004763 5.5e-43 177.6 95 100.0
Haze_03684 Corylus avellana HOM05D004334 ORTHO05D004763 1.8e-33 146.0 107 75.7
Cfa007045 Carpinus fangiana HOM05D004334 ORTHO05D004763 4.1e-30 134.8 95 78.9
CiPaw.08G179800 Carya illinoinensis HOM05D004334 ORTHO05D004763 3.4e-29 131.7 95 74.7
Gohir.D03G004200 Gossypium hirsutum HOM05D004334 ORTHO05D004763 4.5e-29 131.3 95 72.6
Gorai.003G004400 Gossypium raimondii HOM05D004334 ORTHO05D004763 4.5e-29 131.3 95 72.6
Potri.005G104700 Populus trichocarpa HOM05D004334 ORTHO05D004763 4.5e-29 131.3 97 71.1
Potri.005G104800 Populus trichocarpa HOM05D004334 ORTHO05D004763 4.5e-29 131.3 97 71.1
Prupe.7G177700 Prunus persica HOM05D004334 ORTHO05D004763 4.5e-29 131.3 97 68.0
Duzib147G0009 Durio zibethinus HOM05D004334 ORTHO05D004763 1.3e-28 129.8 95 70.5
Atru.chr3.934 Acer truncatum HOM05D004334 ORTHO05D004763 1.7e-28 129.4 97 70.1
Gohir.A02G175700 Gossypium hirsutum HOM05D004334 ORTHO05D004763 2.9e-28 128.6 95 70.5
Thecc.01G009500 Theobroma cacao HOM05D004334 ORTHO05D004763 2.9e-28 128.6 95 70.5
CSS0027377 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 8.5e-28 127.1 95 68.4
CAN.G890.9 Capsicum annuum HOM05D004334 ORTHO05D004763 1.9e-27 125.9 95 68.4
Potri.007G060100 Populus trichocarpa HOM05D004334 ORTHO05D004763 1.9e-27 125.9 95 67.4
TWI73G1167 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 2.5e-27 125.6 97 68.0
Cc07_g11490 Coffea canephora HOM05D004334 ORTHO05D004763 3.2e-27 125.2 95 65.3
Actinidia17393 Actinidia chinensis HOM05D004334 ORTHO05D004763 5.5e-27 124.4 97 66.0
Rhsim08G0028900 Rhododendron simsii HOM05D004334 ORTHO05D004763 9.4e-27 123.6 95 64.2
Hma1.2p1_0315F.1_g122750 Hydrangea macrophylla HOM05D004334 ORTHO05D004763 1.2e-26 123.2 95 65.3
Ciclev10025980m.g Citrus clementina HOM05D004334 ORTHO05D004763 4.7e-26 121.3 97 64.9
MD15G1235400 Malus domestica HOM05D004334 ORTHO05D004763 6.1e-26 120.9 96 62.5
Actinidia02363 Actinidia chinensis HOM05D004334 ORTHO05D004763 8.0e-26 120.6 95 64.2
Nitab4.5_0004994g0030 Nicotiana tabacum HOM05D004334 ORTHO05D004763 1.4e-25 119.8 95 64.2
Peaxi162Scf00439g00007 Petunia axillaris HOM05D004334 ORTHO05D004763 3.0e-25 118.6 97 62.9
CSS0034111 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 6.7e-25 117.5 95 60.0
CSS0049695 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 6.7e-25 117.5 95 60.0
MD02G1121800 Malus domestica HOM05D004334 ORTHO05D004763 6.7e-25 117.5 97 60.8
vmacro18446 Vaccinium macrocarpon HOM05D004334 ORTHO05D004763 6.7e-25 117.5 95 64.2
Dinv40159 Davidia involucrata HOM05D004334 ORTHO05D004763 1.1e-24 116.7 95 63.2
Gorai.007G189900 Gossypium raimondii HOM05D004334 ORTHO05D004763 1.5e-24 116.3 96 68.8
TAR376G1081 Trochodendron aralioides HOM05D004334 ORTHO05D004763 1.5e-24 116.3 97 62.9
Nitab4.5_0000188g0270 Nicotiana tabacum HOM05D004334 ORTHO05D004763 2.0e-24 115.9 95 63.2
Peaxi162Scf00300g00517 Petunia axillaris HOM05D004334 ORTHO05D004763 2.6e-24 115.5 95 64.2
RcHm_v2.0_Chr2g0097961 Rosa chinensis HOM05D004334 ORTHO05D004763 3.3e-24 115.2 97 64.9
CiPaw.07G005200 Carya illinoinensis HOM05D004334 ORTHO05D004763 4.4e-24 114.8 95 67.4
Dinv08539 Davidia involucrata HOM05D004334 ORTHO05D004763 5.7e-24 114.4 95 64.2
FvH4_1g10780 Fragaria vesca HOM05D004334 ORTHO05D004763 7.4e-24 114.0 97 63.9
FAN19G0005 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.4e-24 114.0 97 63.9
FAN23G2490 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.4e-24 114.0 97 63.9
Sabra05G0086000 Salix brachista HOM05D004334 ORTHO05D004763 7.4e-24 114.0 104 61.5
DCAR_011587 Daucus carota HOM05D004334 ORTHO05D004763 9.7e-24 113.6 95 58.9
Oeu012549.1 Olea europaea HOM05D004334 ORTHO05D004763 9.7e-24 113.6 95 60.0
PGSC0003DMG400001577 Solanum tuberosum HOM05D004334 ORTHO05D004763 1.3e-23 113.2 95 61.1
Manes.03G080400 Manihot esculenta HOM05D004334 ORTHO05D004763 1.7e-23 112.8 97 60.8
Sopen02g027910 Solanum pennellii HOM05D004334 ORTHO05D004763 2.8e-23 112.1 95 61.1
FAN26G1367 Fragaria x ananassa HOM05D004334 ORTHO05D004763 8.2e-23 110.5 97 62.9
Gohir.A11G171000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 8.2e-23 110.5 95 66.3
Gohir.D11G178000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 8.2e-23 110.5 95 66.3
Solyc02g083150.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 1.8e-22 109.4 95 60.0
Sopen02g012850 Solanum pennellii HOM05D004334 ORTHO05D004763 1.8e-22 109.4 96 57.3
arahy.Tifrunner.gnm1.ann1.65IKEQ Arachis hypogaea HOM05D004334 ORTHO05D004763 2.4e-22 109.0 96 57.3
Lsat_1_v5_gn_4_143501 Lactuca sativa HOM05D004334 ORTHO05D004763 2.4e-22 109.0 95 58.9
Solyc02g061810.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 3.1e-22 108.6 97 56.7
Aqoxy6G01836 Aquilegia oxysepala HOM05D004334 ORTHO05D004763 7.0e-22 107.5 95 60.0
arahy.Tifrunner.gnm1.ann1.106C79 Arachis hypogaea HOM05D004334 ORTHO05D004763 7.0e-22 107.5 96 56.2
arahy.Tifrunner.gnm1.ann1.R6TSSQ Arachis hypogaea HOM05D004334 ORTHO05D004763 7.0e-22 107.5 96 56.2
Eucgr.I02283 Eucalyptus grandis HOM05D004334 ORTHO05D004763 7.0e-22 107.5 97 59.8
Eucgr.J02517 Eucalyptus grandis HOM05D004334 ORTHO05D004763 1.2e-21 106.7 97 58.8
HanXRQChr09g0256961 Helianthus annuus HOM05D004334 ORTHO05D004763 1.2e-21 106.7 96 56.2
Sc03g0003810 Simmondsia chinensis HOM05D004334 ORTHO05D004763 1.6e-21 106.3 95 57.9
AUR62026202 Chenopodium quinoa HOM05D004334 ORTHO05D004763 3.5e-21 105.1 98 58.2
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 3.5e-21 105.1 95 57.9
Oeu039717.1 Olea europaea HOM05D004334 ORTHO05D004763 3.5e-21 105.1 95 57.9
TPR.G25124 Trifolium pratense HOM05D004334 ORTHO05D004763 5.9e-21 104.4 95 54.7
AUR62026391 Chenopodium quinoa HOM05D004334 ORTHO05D004763 1.0e-20 103.6 98 57.1
CAN.G23.17 Capsicum annuum HOM05D004334 ORTHO05D004763 1.3e-20 103.2 93 61.3
arahy.Tifrunner.gnm1.ann1.5JBS04 Arachis hypogaea HOM05D004334 ORTHO05D004763 2.2e-20 102.4 96 56.2
Migut.H02192 Erythranthe guttata HOM05D004334 ORTHO05D004763 2.2e-20 102.4 97 56.7
Lalb_Chr05g0212061 Lupinus albus HOM05D004334 ORTHO05D004763 6.5e-20 100.9 95 57.9
PSO541G2607 Papaver somniferum HOM05D004334 ORTHO05D004763 8.5e-20 100.5 95 56.8
EL10Ac6g13347 Beta vulgaris HOM05D004334 ORTHO05D004763 1.1e-19 100.1 97 54.6
PGR102G0214 Punica granatum HOM05D004334 ORTHO05D004763 1.5e-19 99.8 95 61.1
PSO675G0891 Papaver somniferum HOM05D004334 ORTHO05D004763 1.9e-19 99.4 95 55.8
MSTRG.2739 Avicennia marina HOM05D004334 ORTHO05D004763 3.2e-19 98.6 97 51.5
Nitab4.5_0005413g0010 Nicotiana tabacum HOM05D004334 ORTHO05D004763 4.2e-19 98.2 96 57.3
PGR119G0893 Punica granatum HOM05D004334 ORTHO05D004763 4.2e-19 98.2 95 58.9
Phvul.002G112900 Phaseolus vulgaris HOM05D004334 ORTHO05D004763 5.5e-19 97.8 96 56.2
Nn6g31831 Nelumbo nucifera HOM05D004334 ORTHO05D004763 7.2e-19 97.4 95 53.7
Actinidia22928 Actinidia chinensis HOM05D004334 ORTHO05D004763 9.4e-19 97.1 80 62.5
Psat2g151080 Pisum sativum HOM05D004334 ORTHO05D004763 9.4e-19 97.1 95 52.6
VMungo1215G1979 Vigna mungo HOM05D004334 ORTHO05D004763 9.4e-19 97.1 95 54.7
MBI08_g35872_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 1.2e-18 96.7 103 53.4
Ca_24954_v3 Cicer arietinum L. HOM05D004334 ORTHO05D004763 1.6e-18 96.3 95 52.6
MBI05_g39718_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 1.6e-18 96.3 95 55.8
Lj2g0016931 Lotus japonicus HOM05D004334 ORTHO05D004763 2.1e-18 95.9 95 52.6
ClCG01G020710 Citrullus lanatus HOM05D004334 ORTHO05D004763 4.7e-18 94.7 102 52.9
Sed0027006 Sechium edule HOM05D004334 ORTHO05D004763 1.0e-17 93.6 95 55.8
Medtr5g023230 Medicago truncatula HOM05D004334 ORTHO05D004763 5.2e-17 91.3 95 50.5
Lalb_Chr09g0321381 Lupinus albus HOM05D002155 ORTHO05D004763 6.7e-17 90.9 88 53.4
MELO3C007955.2 Cucumis melo HOM05D004334 ORTHO05D004763 1.2e-16 90.1 95 52.6
CsaV3_6G047640 Cucumis sativus L. HOM05D004334 ORTHO05D004763 2.0e-16 89.4 95 52.6
THA.LOC104821351 Tarenaya hassleriana HOM05D004334 ORTHO05D004763 4.4e-16 88.2 101 51.5
FAN09G1010 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.5e-16 87.4 92 56.5
FAN09G3278 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.5e-16 87.4 92 56.5
HanXRQChr15g0487491 Helianthus annuus HOM05D004334 ORTHO05D004763 7.5e-16 87.4 95 50.5
TWI53G1416 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 7.5e-16 87.4 92 53.3
BraA01t02255Z Brassica rapa HOM05D004334 ORTHO05D004763 9.7e-16 87.0 101 52.5
FvH4_6g14950 Fragaria vesca HOM05D004334 ORTHO05D004763 2.2e-15 85.9 96 53.1
unitig_699.g19572 Utricularia gibba HOM05D004334 ORTHO05D004763 2.2e-15 85.9 95 48.4
Glyma.11G082600 Glycine max HOM05D004334 ORTHO05D004763 3.7e-15 85.1 89 55.1
FAN14G2747 Fragaria x ananassa HOM05D004334 ORTHO05D004763 6.3e-15 84.3 96 52.1
BcaNung00388 Brassica carinata HOM05D004334 ORTHO05D004763 8.2e-15 84.0 99 51.5
Thhalv10010516m.g Eutrema salsugineum HOM05D004334 ORTHO05D004763 8.2e-15 84.0 97 50.5
FAN02G4027 Fragaria x ananassa HOM05D004334 ORTHO05D004763 8.2e-15 84.0 92 54.3
ATR0661G230 Amborella trichopoda HOM05D004334 ORTHO05D004763 1.1e-14 83.6 95 48.4
Carub.0005s1777 Capsella rubella HOM05D004334 ORTHO05D004763 1.2e-13 80.1 97 47.4
AT3G51390 Arabidopsis thaliana HOM05D004334 ORTHO05D004763 2.7e-13 79.0 97 47.4
CARHR160990 Cardamine hirsuta HOM05D004334 ORTHO05D004763 3.5e-13 78.6 97 47.4
FAN05G4181 Fragaria x ananassa HOM05D004334 ORTHO05D004763 4.5e-13 78.2 92 53.3
AL5G31840 Arabidopsis lyrata HOM05D004334 ORTHO05D004763 5.9e-13 77.8 97 47.4
A09p44490 Brassica napus HOM05D004334 ORTHO05D004763 1.0e-12 77.0 99 48.5
BolC8t50281H Brassica oleracea HOM05D004334 ORTHO05D004763 1.0e-12 77.0 99 50.5
BraA09t39907Z Brassica rapa HOM05D004334 ORTHO05D004763 1.0e-12 77.0 99 48.5
Sp5g10830 Schrenkiella parvula HOM05D004334 ORTHO05D004763 1.3e-12 76.6 97 47.4
SGA_v2.0_scaffold108G30985 Striga asiatica HOM05D004334 ORTHO05D004763 3.8e-12 75.1 78 50.0
PGSC0003DMG403008678 Solanum tuberosum HOM05D004334 ORTHO05D004763 6.5e-12 74.3 65 56.9
C08p26670 Brassica napus HOM05D004334 ORTHO05D004763 1.1e-11 73.6 98 50.0
BcaB01g00520 Brassica carinata HOM05D004334 ORTHO05D004763 1.5e-11 73.2 98 49.0
Lj4A228G17 Lonicera japonica HOM05D004334 ORTHO05D004763 9.4e-11 70.5 47 70.2
HPP92_022390 Vanilla planifolia HOM05D004334 ORTHO05D004763 9.4e-11 70.5 95 46.3
Hund03662 Selenicereus undatus HOM05D004334 ORTHO05D004763 6.1e-10 67.8 97 42.3
Cpa.g.sc6.335 Carica papaya HOM05D004334 ORTHO05D004763 3.0e-09 65.5 47 66.0
Ah.02g129060 Amaranthus hybridus HOM05D004334 ORTHO05D004763 4.0e-09 65.1 72 50.0
Nn5g30900 Nelumbo nucifera HOM05D004334 ORTHO05D004763 5.2e-09 64.7 49 69.4
Sabra07G0050700 Salix brachista HOM05D004334 ORTHO05D004763 5.2e-09 64.7 47 68.1
SGA_v2.0_scaffold2G00960 Striga asiatica HOM05D004334 ORTHO05D004763 4.4e-08 61.6 94 41.5
C01p29130 Brassica napus HOM05D004334 ORTHO05D004763 4.8e-07 58.2 97 39.2
Os12g0480000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 2.4e-06 55.8 95 37.9
SHI49197 Sapria himalayana HOM05D004334 ORTHO05D004763 4.1e-06 55.1 67 41.8
Nitab4.5_0001310g0100 Nicotiana tabacum HOM05D004334 ORTHO05D004763 5.4e-06 54.7 51 56.9


User provided reference genes

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