Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p037244 Quercus lobata HOM05D009958 ORTHO05D007393 4.5e-83 311.2 157 100.0
QL10p038114 Quercus lobata HOM05D009958 ORTHO05D007393 4.5e-83 311.2 157 100.0
Haze_19351 Corylus avellana HOM05D009958 ORTHO05D007393 1.1e-36 157.1 161 60.9
Cfa020918 Carpinus fangiana HOM05D009958 ORTHO05D007393 6.1e-32 141.4 159 58.5
TAR628G0171 Trochodendron aralioides HOM05D007935 ORTHO05D007393 1.1e-25 120.6 170 47.6
TAR376G0933 Trochodendron aralioides HOM05D007935 ORTHO05D007393 1.5e-22 110.2 159 45.3
Nn5g27748 Nelumbo nucifera HOM05D007935 ORTHO05D007393 9.8e-22 107.5 174 39.7
Nn1g08393 Nelumbo nucifera HOM05D007935 ORTHO05D007393 3.7e-21 105.5 164 42.7
Thecc.01G147200 Theobroma cacao HOM05D009958 ORTHO05D007393 6.3e-21 104.8 168 45.2
Manes.12G081400 Manihot esculenta HOM05D009958 ORTHO05D007393 2.0e-19 99.8 160 43.1
Duzib264G0789 Durio zibethinus HOM05D009958 ORTHO05D007393 1.7e-18 96.7 174 41.4
Potri.T045901 Populus trichocarpa HOM05D009958 ORTHO05D007393 6.5e-18 94.7 160 44.4
Potri.018G137700 Populus trichocarpa HOM05D009958 ORTHO05D007393 5.5e-17 91.7 160 43.8
COL.COLO4_33532 Corchorus olitorius HOM05D009958 ORTHO05D007393 2.1e-16 89.7 172 39.0
Gohir.A11G058500 Gossypium hirsutum HOM05D009958 ORTHO05D007393 3.6e-16 89.0 157 39.5
Gorai.007G067700 Gossypium raimondii HOM05D009958 ORTHO05D007393 8.0e-16 87.8 157 40.8
Sabra19G0000200 Salix brachista HOM05D009958 ORTHO05D007393 1.0e-15 87.4 157 41.4
Ciclev10026723m.g Citrus clementina HOM05D009958 ORTHO05D007393 1.3e-13 80.5 153 37.9
Gohir.D11G062800 Gossypium hirsutum HOM05D009958 ORTHO05D007393 1.3e-13 80.5 157 39.5
Solyc11g017390.2 Solanum lycopersicum HOM05D007935 ORTHO05D007393 2.2e-13 79.7 162 32.1
PGSC0003DMG400009223 Solanum tuberosum HOM05D007935 ORTHO05D007393 2.8e-13 79.3 162 32.7
Oeu052900.1 Olea europaea HOM05D009958 ORTHO05D007393 6.3e-13 78.2 155 39.4
Manes.13G153300 Manihot esculenta HOM05D009958 ORTHO05D007393 1.4e-12 77.0 156 37.2
Dinv08012 Davidia involucrata HOM05D007935 ORTHO05D007393 1.8e-12 76.6 165 38.2
Haze_07709 Corylus avellana HOM05D009958 ORTHO05D007393 3.1e-12 75.9 163 39.3
Nitab4.5_0000560g0100 Nicotiana tabacum HOM05D007935 ORTHO05D007393 9.2e-12 74.3 184 33.2
Thecc.08G181700 Theobroma cacao HOM05D007935 ORTHO05D007393 1.6e-11 73.6 174 35.1
Cfa018195 Carpinus fangiana HOM05D007935 ORTHO05D007393 2.0e-11 73.2 178 34.3
Cpa.g.sc138.32 Carica papaya HOM05D009958 ORTHO05D007393 2.7e-11 72.8 159 36.5
arahy.Tifrunner.gnm1.ann1.B1B3Q7 Arachis hypogaea HOM05D007935 ORTHO05D007393 2.3e-10 69.7 162 35.8
Dinv41698 Davidia involucrata HOM05D007935 ORTHO05D007393 3.8e-10 68.9 155 34.2
Phvul.004G084000 Phaseolus vulgaris HOM05D007935 ORTHO05D007393 5.0e-10 68.6 169 32.0
Sopen11g009330 Solanum pennellii HOM05D007935 ORTHO05D007393 8.6e-10 67.8 164 29.9
arahy.Tifrunner.gnm1.ann1.QZIQ5C Arachis hypogaea HOM05D007935 ORTHO05D007393 1.1e-09 67.4 159 34.6
Peaxi162Scf00310g00073 Petunia axillaris HOM05D007935 ORTHO05D007393 1.1e-09 67.4 187 33.2
Rhsim06G0096700 Rhododendron simsii HOM05D007935 ORTHO05D007393 4.3e-09 65.5 180 31.7
TWI32G0406 Tripterygium wilfordii HOM05D007935 ORTHO05D007393 4.3e-09 65.5 158 33.5
Migut.C01245 Erythranthe guttata HOM05D007935 ORTHO05D007393 1.2e-08 63.9 158 31.6
Prupe.8G056300 Prunus persica HOM05D007935 ORTHO05D007393 1.2e-08 63.9 179 29.6
QL02p034017 Quercus lobata HOM05D007935 ORTHO05D007393 1.2e-08 63.9 182 33.0
Glyma.02G074300 Glycine max HOM05D007935 ORTHO05D007393 1.6e-08 63.5 172 33.1
DCAR_013184 Daucus carota HOM05D009958 ORTHO05D007393 2.1e-08 63.2 151 33.8
Cpa.g.sc66.51 Carica papaya HOM05D007935 ORTHO05D007393 8.0e-08 61.2 184 31.5
Duzib177G0305 Durio zibethinus HOM05D007935 ORTHO05D007393 8.0e-08 61.2 178 33.1
HPP92_009280 Vanilla planifolia HOM05D009958 ORTHO05D007393 1.4e-07 60.5 162 31.5
Hma1.2p1_0363F.1_g136610 Hydrangea macrophylla HOM05D007935 ORTHO05D007393 1.8e-07 60.1 159 32.7
Aqoxy2G00980 Aquilegia oxysepala HOM05D009958 ORTHO05D007393 2.3e-07 59.7 151 35.1
Haze_17920 Corylus avellana HOM05D007935 ORTHO05D007393 3.0e-07 59.3 169 30.8
Glyma.16G156000 Glycine max HOM05D007935 ORTHO05D007393 3.0e-07 59.3 172 31.4
Manes.02G191100 Manihot esculenta HOM05D007935 ORTHO05D007393 4.0e-07 58.9 176 33.5
Potri.013G114000 Populus trichocarpa HOM05D007935 ORTHO05D007393 5.2e-07 58.5 190 30.5
AT1G71910 Arabidopsis thaliana HOM05D010479 ORTHO05D007393 6.8e-07 58.2 169 33.7
Nitab4.5_0000422g0110 Nicotiana tabacum HOM05D007935 ORTHO05D007393 6.8e-07 58.2 204 29.4
SalBow7G1894 Salvia bowleyana HOM05D007935 ORTHO05D007393 6.8e-07 58.2 162 31.5
Atru.chr13.1798 Acer truncatum HOM05D007935 ORTHO05D007393 8.9e-07 57.8 185 30.8
COL.COLO4_16292 Corchorus olitorius HOM05D007935 ORTHO05D007393 8.9e-07 57.8 166 33.7
Oeu039600.1 Olea europaea HOM05D007935 ORTHO05D007393 1.5e-06 57.0 167 31.7
Thhalv10019217m.g Eutrema salsugineum HOM05D010479 ORTHO05D007393 2.0e-06 56.6 169 34.3
PGR102G0669 Punica granatum HOM05D007935 ORTHO05D007393 2.0e-06 56.6 171 32.7
AL2G31520 Arabidopsis lyrata HOM05D010479 ORTHO05D007393 2.6e-06 56.2 170 31.8
CSS0018652 Camellia sinensis var. sinensis HOM05D007935 ORTHO05D007393 2.6e-06 56.2 176 30.7
Lalb_Chr19g0129781 Lupinus albus HOM05D007935 ORTHO05D007393 2.6e-06 56.2 166 31.3
Oeu017878.1 Olea europaea HOM05D007935 ORTHO05D007393 3.4e-06 55.8 166 29.5
SGA_v2.0_scaffold12G06279 Striga asiatica HOM05D009958 ORTHO05D007393 4.4e-06 55.5 176 34.1
THA.LOC104810516 Tarenaya hassleriana HOM05D010479 ORTHO05D007393 4.4e-06 55.5 160 31.2
Gohir.A09G117400 Gossypium hirsutum HOM05D007935 ORTHO05D007393 5.8e-06 55.1 173 28.9
CARHR064730 Cardamine hirsuta HOM05D010479 ORTHO05D007393 7.5e-06 54.7 161 34.8


User provided reference genes

Program Settings