Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p036089 Quercus lobata HOM05D006666 ORTHO05D008276 1.2e-36 156.0 78 100.0
QL10p036477 Quercus lobata HOM05D006666 ORTHO05D008276 2.7e-25 118.2 60 98.3
TAR629G2781 Trochodendron aralioides HOM05D006666 ORTHO05D008276 1.3e-19 99.4 69 76.8
GSVIVG01024243001 Vitis vinifera HOM05D006666 ORTHO05D008276 6.6e-19 97.1 60 85.0
CiPaw.16G075700 Carya illinoinensis HOM05D006666 ORTHO05D008276 1.9e-18 95.5 69 71.0
Cfa017808 Carpinus fangiana HOM05D006666 ORTHO05D008276 3.3e-18 94.7 72 72.2
Haze_18405 Corylus avellana HOM05D006666 ORTHO05D008276 3.3e-18 94.7 72 72.2
Eucgr.H00663 Eucalyptus grandis HOM05D006666 ORTHO05D008276 3.3e-18 94.7 71 64.8
AL1G41680 Arabidopsis lyrata HOM05D006666 ORTHO05D008276 4.2e-18 94.4 60 75.0
PSO063G5885 Papaver somniferum HOM05D006666 ORTHO05D008276 5.5e-18 94.0 70 72.9
PSO782G1773 Papaver somniferum HOM05D006666 ORTHO05D008276 5.5e-18 94.0 70 72.9
Thhalv10009115m.g Eutrema salsugineum HOM05D006666 ORTHO05D008276 7.2e-18 93.6 61 77.0
Sp1g24340 Schrenkiella parvula HOM05D006666 ORTHO05D008276 7.2e-18 93.6 60 75.0
AT1G28150 Arabidopsis thaliana HOM05D006666 ORTHO05D008276 9.5e-18 93.2 60 73.3
BcaC05g26820 Brassica carinata HOM05D006666 ORTHO05D008276 9.5e-18 93.2 61 77.0
C05p26900 Brassica napus HOM05D006666 ORTHO05D008276 9.5e-18 93.2 61 77.0
BolC5t31408H Brassica oleracea HOM05D006666 ORTHO05D008276 9.5e-18 93.2 61 77.0
CSS0032824 Camellia sinensis var. sinensis HOM05D006666 ORTHO05D008276 9.5e-18 93.2 71 67.6
Potri.004G066900 Populus trichocarpa HOM05D006666 ORTHO05D008276 1.2e-17 92.8 70 72.9
FAN04G1657 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.6e-17 92.4 69 68.1
CARHR027620 Cardamine hirsuta HOM05D006666 ORTHO05D008276 2.1e-17 92.0 60 73.3
CDE06G1954 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 2.1e-17 92.0 69 68.1
Dinv09758 Davidia involucrata HOM05D006666 ORTHO05D008276 2.1e-17 92.0 71 66.2
TWI81G0077 Tripterygium wilfordii HOM05D006666 ORTHO05D008276 2.1e-17 92.0 70 71.4
Ah.15g090740 Amaranthus hybridus HOM05D006666 ORTHO05D008276 2.8e-17 91.7 69 63.8
BraA07t28933Z Brassica rapa HOM05D006666 ORTHO05D008276 2.8e-17 91.7 60 71.7
BraA09t39302Z Brassica rapa HOM05D006666 ORTHO05D008276 3.6e-17 91.3 61 77.0
RcHm_v2.0_Chr7g0176901 Rosa chinensis HOM05D006666 ORTHO05D008276 3.6e-17 91.3 69 66.7
FAN08G1977 Fragaria x ananassa HOM05D006666 ORTHO05D008276 4.7e-17 90.9 69 66.7
FAN13G2387 Fragaria x ananassa HOM05D006666 ORTHO05D008276 4.7e-17 90.9 69 66.7
Ciclev10023646m.g Citrus clementina HOM05D006666 ORTHO05D008276 6.1e-17 90.5 70 70.0
THA.LOC104812606 Tarenaya hassleriana HOM05D006666 ORTHO05D008276 6.1e-17 90.5 60 75.0
FvH4_5g18600 Fragaria vesca HOM05D006666 ORTHO05D008276 8.0e-17 90.1 69 66.7
FAN18G1406 Fragaria x ananassa HOM05D006666 ORTHO05D008276 8.0e-17 90.1 69 66.7
Atru.chr9.23 Acer truncatum HOM05D006666 ORTHO05D008276 1.0e-16 89.7 69 68.1
BcaC06g35338 Brassica carinata HOM05D006666 ORTHO05D008276 1.0e-16 89.7 60 70.0
A09p37900 Brassica napus HOM05D006666 ORTHO05D008276 1.0e-16 89.7 61 75.4
C07p17240 Brassica napus HOM05D006666 ORTHO05D008276 1.0e-16 89.7 60 70.0
BolC7t42228H Brassica oleracea HOM05D006666 ORTHO05D008276 1.0e-16 89.7 60 70.0
Prupe.5G245400 Prunus persica HOM05D006666 ORTHO05D008276 1.0e-16 89.7 71 67.6
PGR083G1370 Punica granatum HOM05D006666 ORTHO05D008276 1.0e-16 89.7 70 68.6
CAN.G861.22 Capsicum annuum HOM05D006666 ORTHO05D008276 1.4e-16 89.4 69 63.8
Manes.02G219900 Manihot esculenta HOM05D006666 ORTHO05D008276 1.4e-16 89.4 71 63.4
Carub.0001s2658 Capsella rubella HOM05D006666 ORTHO05D008276 1.8e-16 89.0 60 71.7
ECA233G5286 Erigeron canadensis HOM05D006666 ORTHO05D008276 1.8e-16 89.0 60 73.3
Sabra04G0044800 Salix brachista HOM05D006666 ORTHO05D008276 1.8e-16 89.0 61 78.7
Sabra11G0106200 Salix brachista HOM05D006666 ORTHO05D008276 1.8e-16 89.0 61 78.7
Sabra17G0092500 Salix brachista HOM05D006666 ORTHO05D008276 1.8e-16 89.0 61 78.7
Ca_09926_v3 Cicer arietinum L. HOM05D006666 ORTHO05D008276 2.3e-16 88.6 65 67.7
Glyma.20G216200 Glycine max HOM05D006666 ORTHO05D008276 3.0e-16 88.2 60 73.3
BcaB03g13950 Brassica carinata HOM05D006666 ORTHO05D008276 5.2e-16 87.4 60 70.0
A07p11450 Brassica napus HOM05D006666 ORTHO05D008276 6.8e-16 87.0 60 68.3
HanXRQChr05g0141151 Helianthus annuus HOM05D006666 ORTHO05D008276 6.8e-16 87.0 69 66.7
MBI06_g22566_MAGBIO Magnolia biondii HOM05D006666 ORTHO05D008276 6.8e-16 87.0 70 65.7
AUR62037011 Chenopodium quinoa HOM05D006666 ORTHO05D008276 8.9e-16 86.7 69 65.2
Glyma.10G174200 Glycine max HOM05D006666 ORTHO05D008276 8.9e-16 86.7 60 71.7
Os04g0528100 Oryza sativa ssp. japonica HOM05D006666 ORTHO05D008276 8.9e-16 86.7 61 72.1
AUR62006207 Chenopodium quinoa HOM05D006666 ORTHO05D008276 1.2e-15 86.3 69 65.2
Sopen03g029740 Solanum pennellii HOM05D006666 ORTHO05D008276 1.2e-15 86.3 69 62.3
PGSC0003DMG400015210 Solanum tuberosum HOM05D006666 ORTHO05D008276 1.2e-15 86.3 69 63.8
CDE04G3444 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 1.5e-15 85.9 70 65.7
Hund06740 Selenicereus undatus HOM05D006666 ORTHO05D008276 1.5e-15 85.9 71 64.8
Aa31sc45G80 Aethionema arabicum HOM05D006666 ORTHO05D008276 2.0e-15 85.5 60 73.3
Nitab4.5_0009307g0050 Nicotiana tabacum HOM05D006666 ORTHO05D008276 2.0e-15 85.5 69 63.8
vmacro17828 Vaccinium macrocarpon HOM05D006666 ORTHO05D008276 2.0e-15 85.5 72 65.3
Actinidia02653 Actinidia chinensis HOM05D006666 ORTHO05D008276 3.4e-15 84.7 60 71.7
Peaxi162Scf00171g00030 Petunia axillaris HOM05D006666 ORTHO05D008276 3.4e-15 84.7 69 62.3
MSTRG.11567 Avicennia marina HOM05D006666 ORTHO05D008276 4.4e-15 84.3 69 63.8
EL10Ac7g16891 Beta vulgaris HOM05D006666 ORTHO05D008276 5.7e-15 84.0 69 60.9
ATR0124G047 Amborella trichopoda HOM05D006666 ORTHO05D008276 7.5e-15 83.6 61 70.5
Nitab4.5_0008182g0010 Nicotiana tabacum HOM05D006666 ORTHO05D008276 7.5e-15 83.6 69 60.9
Rhsim08G0006200 Rhododendron simsii HOM05D006666 ORTHO05D008276 7.5e-15 83.6 69 65.2
arahy.Tifrunner.gnm1.ann1.UGS5Z8 Arachis hypogaea HOM05D006666 ORTHO05D008276 9.8e-15 83.2 60 66.7
DCAR_011403 Daucus carota HOM05D006666 ORTHO05D008276 9.8e-15 83.2 60 65.0
Hma1.2p1_0816F.1_g222970 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 9.8e-15 83.2 73 60.3
Solyc03g019880.3 Solanum lycopersicum HOM05D006666 ORTHO05D008276 9.8e-15 83.2 69 60.9
Lj5g0025802 Lotus japonicus HOM05D006666 ORTHO05D008276 1.3e-14 82.8 60 68.3
SalBow5G0154 Salvia bowleyana HOM05D006666 ORTHO05D008276 1.3e-14 82.8 60 70.0
MD06G1241100 Malus domestica HOM05D006666 ORTHO05D008276 1.7e-14 82.4 60 73.3
MD14G1247300 Malus domestica HOM05D006666 ORTHO05D008276 1.7e-14 82.4 60 73.3
Oeu038394.2 Olea europaea HOM05D006666 ORTHO05D008276 1.7e-14 82.4 61 67.2
VMungo0720G1342 Vigna mungo HOM05D006666 ORTHO05D008276 1.7e-14 82.4 60 68.3
Nn4g25066 Nelumbo nucifera HOM05D006666 ORTHO05D008276 2.2e-14 82.0 60 70.0
SEGI_19522 Sequoiadendron giganteum HOM05D006666 ORTHO05D008276 2.2e-14 82.0 70 60.0
Cc00_g07700 Coffea canephora HOM05D006666 ORTHO05D008276 3.7e-14 81.3 72 59.7
Medtr1g077550 Medicago truncatula HOM05D006666 ORTHO05D008276 3.7e-14 81.3 69 62.3
SGA_v2.0_scaffold25G10726 Striga asiatica HOM05D006666 ORTHO05D008276 3.7e-14 81.3 69 60.9
TPR.G8870 Trifolium pratense HOM05D006666 ORTHO05D008276 3.7e-14 81.3 60 68.3
Lsat_1_v5_gn_8_1660 Lactuca sativa HOM05D006666 ORTHO05D008276 6.3e-14 80.5 71 60.6
unitig_749.g13724 Utricularia gibba HOM05D006666 ORTHO05D008276 6.3e-14 80.5 69 62.3
COL.COLO4_25502 Corchorus olitorius HOM05D006666 ORTHO05D008276 1.1e-13 79.7 61 72.1
Duzib205G1681 Durio zibethinus HOM05D006666 ORTHO05D008276 1.1e-13 79.7 66 66.7
Phvul.L006501 Phaseolus vulgaris HOM05D006666 ORTHO05D008276 1.4e-13 79.3 60 66.7
Sc10g0008660 Simmondsia chinensis HOM05D006666 ORTHO05D008276 1.4e-13 79.3 71 57.7
Lalb_Chr21g0311701 Lupinus albus HOM05D006666 ORTHO05D008276 1.8e-13 79.0 60 63.3
Gohir.A07G062700 Gossypium hirsutum HOM05D006666 ORTHO05D008276 3.2e-13 78.2 61 67.2
Gorai.001G070900 Gossypium raimondii HOM05D006666 ORTHO05D008276 3.2e-13 78.2 61 67.2
HPP92_021068 Vanilla planifolia HOM05D006666 ORTHO05D008276 5.4e-13 77.4 64 62.5
Sed0024015 Sechium edule HOM05D006666 ORTHO05D008276 7.0e-13 77.0 60 63.3
MELO3C001965.2 Cucumis melo HOM05D006666 ORTHO05D008276 1.2e-12 76.3 60 61.7
Migut.O00284 Erythranthe guttata HOM05D006666 ORTHO05D008276 3.5e-12 74.7 70 58.6
Gohir.D07G067300 Gossypium hirsutum HOM05D006666 ORTHO05D008276 3.5e-12 74.7 61 65.6
SalBow1G4610 Salvia bowleyana HOM05D006666 ORTHO05D008276 3.5e-12 74.7 54 66.7
Thecc.03G072200 Theobroma cacao HOM05D006666 ORTHO05D008276 3.5e-12 74.7 65 63.1
Mapoly0096s0047 Marchantia polymorpha HOM05D006666 ORTHO05D008276 5.9e-12 73.9 60 58.3
ClCG04G012450 Citrullus lanatus HOM05D006666 ORTHO05D008276 1.3e-11 72.8 60 60.0
Pp3c19_21970 Physcomitrium patens HOM05D006666 ORTHO05D008276 2.3e-11 72.0 65 52.3
Psat6g054440 Pisum sativum HOM05D006666 ORTHO05D008276 2.3e-11 72.0 68 58.8
Hma1.2p1_0816F.1_g222980 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 2.9e-11 71.6 57 64.9
AagrBONN_evm.TU.Sc2ySwM_344.686 Anthoceros agrestis HOM05D006666 ORTHO05D008276 5.0e-11 70.9 60 56.7
Aqoxy3G04334 Aquilegia oxysepala HOM05D006666 ORTHO05D008276 3.3e-10 68.2 67 55.2
CsaV3_1G005250 Cucumis sativus L. HOM05D006666 ORTHO05D008276 4.3e-10 67.8 48 66.7
COL.COLO4_37022 Corchorus olitorius HOM05D006666 ORTHO05D008276 1.4e-08 62.8 53 69.8
SMO143G0007 Selaginella moellendorffii HOM05D006666 ORTHO05D008276 8.9e-08 60.1 60 48.3
MCO08G267 Micromonas commoda HOM05D006666 ORTHO05D008276 2.2e-06 55.5 66 40.9
PRCOL_00004364 Prasinoderma coloniale HOM05D006666 ORTHO05D008276 4.9e-06 54.3 51 47.1


User provided reference genes

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