Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p035447 Quercus lobata HOM05D003493 ORTHO05D003980 3.7e-73 278.5 180 100.0
QL10p036801 Quercus lobata HOM05D003493 ORTHO05D003980 3.7e-73 278.5 180 100.0
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 2.2e-41 172.9 185 58.4
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 3.8e-38 162.2 206 54.9
CiPaw.15G108800 Carya illinoinensis HOM05D003493 ORTHO05D003980 3.8e-38 162.2 185 57.8
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 6.1e-36 154.8 207 55.1
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 3.4e-34 149.1 195 51.3
Cpa.g.sc829.1 Carica papaya HOM05D003493 ORTHO05D003980 5.4e-32 141.7 192 49.0
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 1.6e-31 140.2 195 43.6
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 2.3e-30 136.3 186 43.5
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 2.9e-30 136.0 186 47.3
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 8.6e-30 134.4 188 47.9
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 8.6e-30 134.4 191 51.3
COL.COLO4_22901 Corchorus olitorius HOM05D003493 ORTHO05D003980 5.5e-29 131.7 187 40.6
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 7.2e-29 131.3 192 41.7
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.2e-28 130.6 194 49.5
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 2.1e-28 129.8 194 49.5
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 2.1e-28 129.8 188 44.7
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 6.1e-28 128.3 194 49.5
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 1.4e-27 127.1 194 49.0
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.8e-27 126.7 194 49.0
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 3.0e-27 125.9 189 47.1
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 5.2e-27 125.2 187 39.6
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 6.8e-27 124.8 175 41.7
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 4.4e-26 122.1 188 45.7
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 5.7e-26 121.7 185 41.6
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 5.7e-26 121.7 185 41.6
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 5.7e-26 121.7 185 41.6
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 1.7e-25 120.2 191 41.4
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 2.8e-25 119.4 180 42.8
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 2.8e-25 119.4 192 43.8
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 3.7e-25 119.0 193 47.2
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 4.9e-25 118.6 185 42.2
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 8.3e-25 117.9 183 40.4
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 1.1e-24 117.5 203 44.8
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 4.1e-24 115.5 201 37.8
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 2.0e-23 113.2 183 38.3
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 3.5e-23 112.5 211 41.2
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 4.5e-23 112.1 195 45.6
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 5.9e-23 111.7 186 38.2
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 2.9e-22 109.4 195 44.1
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 3.8e-22 109.0 188 37.8
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 5.0e-22 108.6 198 41.4
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 5.0e-22 108.6 195 43.6
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 1.9e-21 106.7 205 41.5
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 7.3e-21 104.8 180 42.8
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 1.6e-20 103.6 205 41.0
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 1.6e-20 103.6 177 39.0
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 2.1e-20 103.2 190 37.4
Oeu034418.1 Olea europaea HOM05D003493 ORTHO05D003980 2.8e-20 102.8 187 38.5
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 1.8e-19 100.1 188 36.2
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 1.8e-19 100.1 209 39.2
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 2.3e-19 99.8 188 36.2
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 2.3e-19 99.8 200 40.0
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 3.0e-19 99.4 193 37.3
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 3.0e-19 99.4 203 40.9
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 6.8e-19 98.2 191 36.1
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 8.9e-19 97.8 212 37.3
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 1.2e-18 97.4 210 43.8
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 1.2e-18 97.4 193 37.3
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 1.5e-18 97.1 219 33.8
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 1.5e-18 97.1 219 36.5
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 2.6e-18 96.3 193 37.3
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 4.4e-18 95.5 191 32.5
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 4.4e-18 95.5 190 34.2
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 5.7e-18 95.1 197 41.6
DCAR_011395 Daucus carota HOM05D003493 ORTHO05D003980 9.8e-18 94.4 206 34.0
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 9.8e-18 94.4 214 36.0
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 9.8e-18 94.4 205 38.0
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 1.7e-17 93.6 210 37.1
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 2.2e-17 93.2 210 41.4
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 3.7e-17 92.4 221 34.8
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 4.9e-17 92.0 192 35.4
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 8.3e-17 91.3 222 32.4
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 8.3e-17 91.3 208 37.5
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 8.3e-17 91.3 208 37.5
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 1.1e-16 90.9 192 33.9
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 1.1e-16 90.9 186 38.2
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 2.4e-16 89.7 191 32.5
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 3.2e-16 89.4 186 38.2
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 4.1e-16 89.0 183 33.3
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 5.4e-16 88.6 190 32.6
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 5.4e-16 88.6 205 36.6
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 5.4e-16 88.6 193 33.7
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 7.0e-16 88.2 231 31.2
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 1.2e-15 87.4 231 30.7
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 1.6e-15 87.0 190 33.2
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 1.6e-15 87.0 210 38.1
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 2.0e-15 86.7 232 30.2
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 2.7e-15 86.3 225 36.4
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 3.5e-15 85.9 222 40.1
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 3.5e-15 85.9 190 34.2
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 3.5e-15 85.9 193 33.2
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 4.6e-15 85.5 222 41.0
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 4.6e-15 85.5 214 29.9
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 1.0e-14 84.3 180 33.3
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.0e-14 84.3 232 29.3
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 1.7e-14 83.6 222 39.2
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 1.7e-14 83.6 222 39.2
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 2.3e-14 83.2 222 39.2
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 3.0e-14 82.8 191 36.1
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 3.0e-14 82.8 191 33.5
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 6.6e-14 81.6 172 33.1
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 8.6e-14 81.3 218 38.5
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 1.1e-13 80.9 200 31.0
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 1.5e-13 80.5 230 28.7
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 1.5e-13 80.5 201 33.8
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.5e-13 80.5 232 28.9
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 1.5e-13 80.5 201 32.3
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 5.6e-13 78.6 192 40.6
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 5.6e-13 78.6 199 38.7
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 5.6e-13 78.6 187 34.2
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 5.6e-13 78.6 206 33.5
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 1.2e-12 77.4 185 39.5
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 1.2e-12 77.4 218 30.7
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 2.8e-12 76.3 193 31.1
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 2.8e-12 76.3 173 33.5
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 3.6e-12 75.9 236 29.2
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 4.7e-12 75.5 202 38.1
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 1.1e-11 74.3 170 32.9
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 1.8e-11 73.6 180 31.7
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 4.0e-11 72.4 174 31.6
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 4.0e-11 72.4 174 31.6
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 6.8e-11 71.6 187 33.2
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 8.9e-11 71.2 205 33.2
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.0e-10 70.1 174 31.6
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 3.4e-10 69.3 133 37.6
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 5.8e-10 68.6 198 26.3
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.7e-09 67.0 202 30.7
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 3.7e-09 65.9 200 27.0
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 3.7e-09 65.9 182 28.6
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.7e-09 65.9 197 31.0
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 2.4e-08 63.2 175 28.6
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 3.2e-08 62.8 194 39.2
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 4.1e-08 62.4 220 25.5
BcaC07g41355 Brassica carinata HOM05D003493 ORTHO05D003980 5.4e-08 62.0 114 41.2
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 1.2e-07 60.8 180 32.8
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 2.0e-07 60.1 132 31.8
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 3.5e-07 59.3 171 31.0
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 4.6e-07 58.9 56 48.2
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 1.3e-06 57.4 195 31.3


User provided reference genes

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