Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 2.2e-111 405.6 197 100.0
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 1.2e-109 399.8 197 98.5
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 2.3e-76 289.3 158 84.8
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 3.9e-76 288.5 158 84.8
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 5.1e-76 288.1 158 83.5
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 5.1e-76 288.1 158 83.5
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 4.3e-75 285.0 158 81.6
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 7.3e-75 284.3 161 82.0
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 1.2e-74 283.5 158 82.3
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 2.8e-74 282.3 158 81.6
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 4.7e-74 281.6 158 82.3
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 1.1e-73 280.4 158 80.4
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.4e-73 280.0 176 74.4
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 2.4e-73 279.3 158 81.6
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 2.4e-73 279.3 158 80.4
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 4.0e-73 278.5 158 83.5
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 5.2e-73 278.1 158 80.4
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 5.2e-73 278.1 161 79.5
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 6.8e-73 277.7 158 81.6
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 6.8e-73 277.7 176 73.9
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 8.9e-73 277.3 158 81.6
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.2e-72 276.9 158 82.3
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 1.5e-72 276.6 158 79.7
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 1.5e-72 276.6 158 79.7
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.5e-72 276.6 158 80.4
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 2.6e-72 275.8 158 79.1
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 2.6e-72 275.8 158 81.6
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 3.4e-72 275.4 158 82.9
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 3.4e-72 275.4 158 81.6
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 4.4e-72 275.0 158 78.5
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 4.4e-72 275.0 158 79.7
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 5.8e-72 274.6 158 79.1
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 5.8e-72 274.6 158 79.7
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 7.6e-72 274.2 158 78.5
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 7.6e-72 274.2 158 77.2
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 1.3e-71 273.5 158 77.2
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.3e-71 273.5 158 79.7
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 1.7e-71 273.1 158 80.4
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 1.7e-71 273.1 158 77.2
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 2.2e-71 272.7 158 77.8
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 2.9e-71 272.3 158 77.2
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 2.9e-71 272.3 158 79.7
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 3.8e-71 271.9 158 77.2
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 3.8e-71 271.9 158 77.2
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 4.9e-71 271.6 158 77.2
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 4.9e-71 271.6 158 81.6
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 6.4e-71 271.2 158 77.8
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 1.4e-70 270.0 158 76.6
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 1.4e-70 270.0 158 77.8
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 2.4e-70 269.2 158 77.8
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 2.4e-70 269.2 158 78.5
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 3.2e-70 268.9 158 77.2
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 3.2e-70 268.9 158 79.1
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 3.2e-70 268.9 158 78.5
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 5.4e-70 268.1 158 79.1
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 5.4e-70 268.1 158 77.2
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 7.1e-70 267.7 157 77.1
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 9.3e-70 267.3 158 77.2
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 9.3e-70 267.3 158 80.4
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.2e-69 266.9 158 75.9
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.6e-69 266.5 158 77.2
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 2.1e-69 266.2 158 79.7
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 2.7e-69 265.8 156 81.4
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 4.6e-69 265.0 158 75.9
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.0e-68 263.8 158 76.6
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.0e-68 263.8 158 73.4
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 1.0e-68 263.8 157 75.8
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 1.7e-68 263.1 152 80.3
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 3.0e-68 262.3 158 76.6
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 3.9e-68 261.9 158 77.2
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.1e-67 260.4 158 77.2
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 3.3e-67 258.8 158 71.5
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 5.6e-67 258.1 158 71.5
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 7.3e-67 257.7 152 78.9
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 9.6e-67 257.3 158 73.4
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 2.1e-66 256.1 158 75.9
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 3.6e-66 255.4 158 70.3
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 3.6e-66 255.4 177 67.8
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 4.8e-66 255.0 177 67.8
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 6.2e-66 254.6 177 67.8
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.1e-65 253.8 158 72.8
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 1.4e-65 253.4 157 75.2
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 1.8e-65 253.1 159 74.2
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 5.3e-65 251.5 158 75.3
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 6.9e-65 251.1 158 70.9
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.4e-64 248.8 158 75.3
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 5.8e-64 248.1 176 68.2
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 1.3e-63 246.9 158 70.3
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.4e-62 242.7 183 63.4
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 3.2e-62 242.3 156 73.1
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 3.5e-61 238.8 158 70.3
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 3.0e-60 235.7 158 70.9
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 6.6e-60 234.6 158 69.0
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 5.6e-59 231.5 143 69.9
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.1e-54 217.2 159 61.0
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 3.0e-52 209.1 144 63.9
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.9e-51 206.5 153 60.1
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 1.3e-47 193.7 142 60.6
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.3e-44 183.7 108 77.8
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 3.0e-44 182.6 158 57.6
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 1.9e-43 179.9 110 71.8
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.9e-43 179.9 158 58.2
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 2.5e-43 179.5 106 74.5
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 2.5e-43 179.5 158 57.0
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 2.1e-42 176.4 158 57.0
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 4.8e-42 175.3 100 77.0
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 2.4e-41 172.9 122 68.0
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 9.0e-41 171.0 148 58.1
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 2.0e-40 169.9 101 74.3
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.7e-39 166.8 149 56.4
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 5.5e-38 161.8 91 85.7
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 5.5e-38 161.8 91 85.7
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.2e-37 160.6 90 85.6
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 2.5e-35 152.9 91 79.1
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 5.9e-32 141.7 177 40.7
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 5.9e-32 141.7 177 40.7
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 9.4e-30 134.4 138 47.8
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 2.1e-29 133.3 86 67.4
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 1.4e-28 130.6 89 61.8
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 9.7e-27 124.4 67 79.1
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 9.7e-27 124.4 74 70.3
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 8.2e-26 121.3 75 73.3
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 3.8e-23 112.5 63 76.2
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.0e-20 104.4 60 75.0
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 1.0e-20 104.4 60 81.7
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.1e-19 100.9 60 78.3
CiPaw.02G181900 Carya illinoinensis HOM05D005071 ORTHO05D006069 2.2e-15 86.7 56 78.6
BcaC05g27571 Brassica carinata HOM05D005071 ORTHO05D031708 8.2e-10 68.2 45 73.3
C05p35540 Brassica napus HOM05D005071 ORTHO05D031708 8.2e-10 68.2 45 73.3
BolC5t32266H Brassica oleracea HOM05D005071 ORTHO05D031708 8.2e-10 68.2 45 73.3
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 2.4e-09 66.6 83 44.6
FvH4_5g18020 Fragaria vesca HOM05D005071 ORTHO05D006069 3.8e-07 59.3 28 85.7
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 5.0e-07 58.9 56 50.0
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 2.5e-06 56.6 66 48.5
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 4.2e-06 55.8 165 25.5


User provided reference genes

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