Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 2172.1 1106 100.0
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1649.8 1134 76.4
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 0.0e+00 1493.8 1133 70.4
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1340.1 1142 63.4
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1326.6 1133 63.7
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1321.2 1109 64.4
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1302.3 1132 63.1
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1301.6 1135 61.9
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 0.0e+00 1293.5 1118 63.3
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1292.3 1132 62.8
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 0.0e+00 1291.9 1132 62.8
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1290.0 1131 62.4
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1288.5 1132 62.5
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1279.6 1132 62.2
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1275.0 1131 62.1
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 0.0e+00 1272.3 1135 62.0
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 0.0e+00 1257.7 1132 61.7
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 0.0e+00 1253.4 966 69.6
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 0.0e+00 1239.6 1125 61.1
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 0.0e+00 1217.2 1007 66.1
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 0.0e+00 1199.5 1132 59.3
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 0.0e+00 1198.7 873 72.9
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 0.0e+00 1193.3 1136 59.1
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1191.0 1126 58.8
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1186.0 1127 58.4
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 0.0e+00 1183.3 1126 57.7
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 0.0e+00 1179.5 1113 60.1
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 0.0e+00 1172.5 1124 57.7
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 0.0e+00 1169.1 1111 59.1
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1162.9 1128 57.3
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 0.0e+00 1162.5 1150 56.7
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1159.4 1147 55.8
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 0.0e+00 1155.6 1131 56.9
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 0.0e+00 1154.8 1129 56.8
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 0.0e+00 1154.8 1128 56.6
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 0.0e+00 1149.0 1103 57.4
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 0.0e+00 1144.4 1111 57.2
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 0.0e+00 1142.1 1130 58.1
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 0.0e+00 1141.7 1003 63.1
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1141.7 1129 57.0
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 0.0e+00 1125.5 1143 55.7
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 0.0e+00 1122.5 1169 55.0
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 0.0e+00 1114.8 1159 55.0
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 0.0e+00 1110.9 1147 54.9
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 0.0e+00 1109.0 1147 55.6
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 0.0e+00 1097.8 1125 56.3
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 0.0e+00 1096.6 1149 54.2
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 0.0e+00 1096.3 1139 54.4
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 0.0e+00 1092.4 1140 53.9
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 0.0e+00 1090.5 1115 55.3
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 0.0e+00 1082.8 1121 54.7
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 0.0e+00 1081.2 1035 58.5
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 0.0e+00 1080.5 968 62.3
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 0.0e+00 1077.8 1206 52.2
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 7.6e-312 1074.3 1143 53.5
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 4.8e-309 1064.7 1142 52.9
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 6.3e-309 1064.3 1142 53.2
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 4.1e-308 1061.6 1100 55.3
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 3.8e-306 1055.0 1122 53.8
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 8.8e-303 1043.9 982 58.5
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 5.7e-302 1041.2 1155 52.3
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 3.1e-300 1035.4 1125 54.5
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.8e-295 1019.6 1162 52.4
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 9.2e-292 1007.3 1139 51.1
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 3.5e-291 1005.4 1164 51.4
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 3.6e-288 995.3 1102 52.2
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.1e-287 992.3 1218 48.8
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 3.7e-285 985.3 1119 51.6
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.4e-284 981.5 1136 51.2
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.2e-283 980.3 1115 51.5
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 1.6e-283 979.9 1159 50.8
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 1.3e-282 976.9 1128 50.7
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 5.0e-282 974.9 1111 49.8
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.5e-281 973.4 1135 51.2
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.5e-281 973.4 1097 52.2
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.4e-279 966.8 1122 50.3
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.8e-279 966.5 1125 50.6
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.3e-277 960.3 1131 50.2
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.7e-277 959.9 1167 49.4
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 1.7e-277 959.9 1119 50.8
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.4e-276 956.8 1119 50.6
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 3.2e-276 955.7 1115 50.6
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 7.1e-276 954.5 1119 50.8
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 2.1e-275 953.0 1119 50.2
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 2.1e-275 953.0 1119 50.2
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.0e-274 950.7 1117 50.5
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.3e-274 950.3 1112 49.0
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 2.3e-274 949.5 1112 49.5
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 3.0e-274 949.1 1137 49.7
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 5.1e-274 948.3 1112 49.6
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 6.6e-274 948.0 1112 49.6
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 3.3e-273 945.7 1120 50.2
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 4.7e-272 941.8 1120 48.8
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 1.8e-271 939.9 1125 49.9
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 3.1e-271 939.1 1159 49.9
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 4.0e-271 938.7 1116 48.9
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 4.0e-271 938.7 1103 50.8
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.2e-270 937.2 1113 49.3
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 5.8e-270 934.9 881 59.5
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 1.4e-268 930.2 1111 49.2
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.9e-268 929.9 1042 51.1
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 2.3e-266 922.9 1146 47.6
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.2e-264 917.1 1121 47.8
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 6.4e-261 904.8 1118 48.3
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 6.2e-256 888.3 712 67.7
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 5.8e-254 881.7 687 68.4
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.9e-251 871.3 687 67.7
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 9.6e-249 864.4 898 55.0
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.4e-247 860.5 1134 45.9
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 5.1e-242 842.0 696 65.4
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 8.4e-237 824.7 1140 44.3
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 2.5e-233 813.1 868 54.1
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 2.5e-233 813.1 966 50.9
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 9.7e-233 811.2 792 57.6
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.0e-226 791.2 800 55.9
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.8e-224 783.1 554 72.9
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 2.2e-221 773.5 651 64.4
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 2.9e-221 773.1 1149 43.2
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 3.4e-214 749.6 854 51.3
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 4.2e-212 742.7 963 47.4
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 3.5e-206 723.0 643 62.7
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 7.7e-206 721.8 544 69.3
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.8e-194 684.1 451 75.6
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 2.7e-190 670.2 1147 40.5
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 1.9e-180 637.5 650 55.7
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.9e-172 610.9 720 51.4
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 4.1e-167 593.2 952 42.5
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 8.7e-133 479.2 608 48.5
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.9e-132 478.0 608 48.4
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 8.1e-131 472.6 440 59.8
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 6.9e-130 469.5 679 42.0
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 3.4e-129 467.2 769 39.8
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.8e-128 463.8 268 86.6
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.8e-128 463.8 268 86.6
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 1.7e-104 385.2 328 59.1
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.7e-92 343.6 206 83.5
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 3.1e-90 337.8 623 41.9
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 7.5e-68 263.5 695 33.8
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 6.1e-62 243.8 816 28.9
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 5.2e-61 240.7 221 56.1
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 1.4e-53 216.1 142 77.5
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.6e-41 176.0 145 62.1
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 6.6e-40 170.6 184 54.9
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 1.8e-37 162.5 91 87.9
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 4.9e-35 154.5 184 45.7
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 4.6e-33 147.9 159 56.6
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 1.7e-32 146.0 91 76.9
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 6.6e-24 117.5 363 29.2
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.3e-22 113.2 385 29.9
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 7.6e-20 104.0 67 70.1
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 7.1e-18 97.4 129 40.3
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 1.1e-13 83.6 114 42.1
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 1.8e-13 82.8 111 43.2
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 2.0e-12 79.3 112 42.0
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 4.5e-12 78.2 105 41.9
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.2e-09 70.1 182 31.9
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 6.7e-08 64.3 180 28.3
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 2.1e-06 59.3 149 30.9


User provided reference genes

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