Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 5.5e-101 370.9 182 100.0
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 5.0e-46 188.3 167 64.1
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 3.6e-44 182.2 167 61.1
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 6.2e-44 181.4 167 61.1
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 1.2e-42 177.2 167 58.7
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 1.5e-42 176.8 167 59.3
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 2.6e-42 176.0 167 57.5
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 4.4e-42 175.3 167 59.3
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 5.8e-42 174.9 167 58.1
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 7.5e-42 174.5 167 58.1
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 9.8e-42 174.1 167 58.7
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 1.7e-41 173.3 169 56.2
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.7e-41 173.3 167 58.1
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 2.2e-41 172.9 167 56.3
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.2e-41 172.9 167 57.5
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 2.9e-41 172.6 167 57.5
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 3.7e-41 172.2 167 56.9
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 6.4e-41 171.4 167 55.1
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 6.4e-41 171.4 167 55.1
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 6.4e-41 171.4 167 56.9
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 6.4e-41 171.4 167 55.7
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 6.4e-41 171.4 167 58.1
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 6.4e-41 171.4 167 55.7
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 8.3e-41 171.0 167 56.9
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.1e-40 170.6 167 56.9
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.1e-40 170.6 167 55.7
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.4e-40 170.2 167 56.9
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.4e-40 170.2 167 55.1
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.4e-40 170.2 167 56.3
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.4e-40 170.2 167 56.3
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.9e-40 169.9 167 55.1
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.9e-40 169.9 167 58.1
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 2.4e-40 169.5 167 57.5
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 2.4e-40 169.5 166 57.2
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 3.2e-40 169.1 167 56.3
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 3.2e-40 169.1 167 55.7
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 4.1e-40 168.7 166 58.4
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.1e-40 168.7 167 56.9
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 5.4e-40 168.3 176 54.0
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 9.2e-40 167.5 167 55.1
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 9.2e-40 167.5 167 55.1
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 9.2e-40 167.5 167 55.1
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.2e-39 167.2 169 52.7
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 1.6e-39 166.8 167 54.5
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.6e-39 166.8 167 53.9
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.6e-39 166.8 167 55.7
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.6e-39 166.8 167 55.1
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 2.1e-39 166.4 167 55.1
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 2.7e-39 166.0 167 54.5
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.5e-39 165.6 167 55.1
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 3.5e-39 165.6 167 54.5
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 3.5e-39 165.6 168 55.4
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 4.6e-39 165.2 167 55.7
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 6.0e-39 164.9 166 57.2
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 6.0e-39 164.9 166 57.2
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 6.0e-39 164.9 167 54.5
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 7.8e-39 164.5 167 55.1
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.0e-38 164.1 167 53.9
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 3.0e-38 162.5 167 56.3
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 3.0e-38 162.5 167 55.1
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 3.0e-38 162.5 167 53.3
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 3.9e-38 162.2 167 53.9
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 5.1e-38 161.8 166 54.8
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 6.6e-38 161.4 167 55.7
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 6.6e-38 161.4 166 53.6
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 8.6e-38 161.0 167 52.7
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 8.6e-38 161.0 155 58.1
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.5e-37 160.2 167 52.7
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.5e-37 160.2 167 53.9
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 3.3e-37 159.1 166 56.0
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 3.3e-37 159.1 167 55.1
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 3.3e-37 159.1 167 55.1
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 4.3e-37 158.7 166 53.0
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 7.3e-37 157.9 167 53.9
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 7.3e-37 157.9 167 53.3
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 9.5e-37 157.5 167 51.5
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 9.5e-37 157.5 166 54.2
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.2e-36 157.1 167 55.1
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.2e-36 157.1 167 50.9
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.2e-36 157.1 165 52.1
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.2e-36 157.1 102 77.5
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.6e-36 156.8 167 51.5
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.6e-36 156.8 167 51.5
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.6e-36 156.8 167 54.5
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.6e-36 156.8 166 53.6
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.6e-36 156.8 167 52.1
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 2.1e-36 156.4 167 50.9
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.1e-36 156.4 166 55.4
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 2.1e-36 156.4 167 52.7
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.1e-36 156.4 167 51.5
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 2.1e-36 156.4 167 53.3
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 2.1e-36 156.4 168 53.0
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.8e-36 156.0 167 51.5
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.8e-36 156.0 167 53.3
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 3.6e-36 155.6 167 50.9
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 3.6e-36 155.6 167 52.1
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 3.6e-36 155.6 167 53.9
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 4.7e-36 155.2 166 52.4
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 4.7e-36 155.2 169 51.5
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 6.2e-36 154.8 167 50.9
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 6.2e-36 154.8 167 50.9
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 6.2e-36 154.8 167 50.9
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 8.1e-36 154.5 167 52.7
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.1e-35 154.1 167 50.9
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.1e-35 154.1 167 50.9
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 2.3e-35 152.9 167 50.9
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.3e-35 152.9 167 49.7
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 3.1e-35 152.5 167 50.3
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.1e-35 152.5 167 49.1
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 5.2e-35 151.8 167 50.9
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 5.2e-35 151.8 167 52.1
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 6.8e-35 151.4 167 49.7
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.2e-34 150.6 166 51.2
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 3.8e-33 145.6 167 49.1
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.1e-32 142.1 166 51.2
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 1.2e-31 140.6 167 47.3
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 1.6e-31 140.2 170 47.1
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 2.7e-31 139.4 167 48.5
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 6.0e-31 138.3 156 50.6
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 1.9e-29 133.3 166 48.2
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.5e-29 132.9 167 44.9
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.3e-29 132.1 167 44.3
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 3.1e-27 125.9 167 42.5
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.2e-26 124.0 175 40.6
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.5e-26 123.6 167 43.7
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.5e-26 123.6 167 43.7
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.3e-25 120.6 167 42.5
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 4.2e-24 115.5 181 42.0
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 1.6e-23 113.6 91 62.6
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.1e-23 113.2 82 69.5
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.1e-23 113.2 82 69.5
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 3.5e-23 112.5 91 62.6
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 7.8e-23 111.3 167 38.9
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.3e-22 110.5 167 38.3
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.9e-21 106.7 95 57.9
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.3e-21 105.9 169 40.8
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 2.4e-16 89.7 100 48.0
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 7.9e-15 84.7 100 51.0
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.0e-14 84.3 73 54.8
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 2.5e-13 79.7 100 41.0
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.2e-10 70.9 47 76.6
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.6e-10 69.7 101 45.5
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.9e-09 66.2 98 42.9
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.4e-08 63.9 106 39.6
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 5.5e-08 62.0 103 37.9
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.1e-08 61.6 49 59.2
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 9.3e-08 61.2 98 40.8
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 1.3e-06 57.4 47 55.3
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 8.7e-06 54.7 57 49.1
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 8.7e-06 54.7 46 56.5


User provided reference genes

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