Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p030090 Quercus lobata HOM05D019990 ORTHO05D007789 1.2e-101 373.2 194 100.0
QL10p030102 Quercus lobata HOM05D019990 ORTHO05D007789 2.4e-86 322.4 226 75.7
QL10p030388 Quercus lobata HOM05D019990 ORTHO05D007789 1.1e-80 303.5 230 74.3
QL10p030420 Quercus lobata HOM05D019990 ORTHO05D007789 1.3e-79 300.1 227 72.2
QL10p030347 Quercus lobata HOM05D019990 ORTHO05D007789 2.4e-78 295.8 229 75.5
QL04p003256 Quercus lobata HOM05D019990 ORTHO05D007789 8.9e-25 117.9 145 51.0
PGR083G2854 Punica granatum HOM05D008623 ORTHO05D007789 3.4e-16 89.4 155 37.4
PGR083G2548 Punica granatum HOM05D008623 ORTHO05D007789 5.8e-16 88.6 155 39.4
CSS0009631 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.2e-15 86.7 167 38.3
CSS0006926 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 1.4e-14 84.0 160 38.1
PGR083G1822 Punica granatum HOM05D008623 ORTHO05D007789 2.4e-14 83.2 155 36.8
CSS0027810 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.6e-13 80.5 117 42.7
CSS0039646 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 2.1e-13 80.1 149 37.6
Dinv01175 Davidia involucrata HOM05D008623 ORTHO05D007789 2.1e-13 80.1 119 40.3
CSS0001720 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 2.7e-13 79.7 160 37.5
arahy.Tifrunner.gnm1.ann1.J4CNX7 Arachis hypogaea HOM05D010841 ORTHO05D007789 4.6e-13 79.0 112 39.3
arahy.Tifrunner.gnm1.ann1.JW8DXZ Arachis hypogaea HOM05D010841 ORTHO05D007789 4.6e-13 79.0 112 38.4
TWI36G0661 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 4.6e-13 79.0 146 34.9
arahy.Tifrunner.gnm1.ann1.52E6WN Arachis hypogaea HOM05D010841 ORTHO05D007789 1.0e-12 77.8 112 39.3
CSS0021925 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.3e-12 77.4 140 40.7
Hma1.2p1_0785F.1_g217500 Hydrangea macrophylla HOM05D008623 ORTHO05D007789 1.7e-12 77.0 141 36.9
Dinv41634 Davidia involucrata HOM05D008623 ORTHO05D007789 3.9e-12 75.9 119 38.7
arahy.Tifrunner.gnm1.ann1.E31NWF Arachis hypogaea HOM05D010841 ORTHO05D007789 6.6e-12 75.1 112 38.4
arahy.Tifrunner.gnm1.ann1.B6M36H Arachis hypogaea HOM05D010841 ORTHO05D007789 1.5e-11 73.9 112 37.5
Dinv04048 Davidia involucrata HOM05D000041 ORTHO05D019419 1.5e-11 73.9 123 37.4
CSS0008827 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.9e-11 73.6 168 36.3
Thecc.01G408800 Theobroma cacao HOM05D008623 ORTHO05D007789 1.9e-11 73.6 102 41.2
arahy.Tifrunner.gnm1.ann1.W55X99 Arachis hypogaea HOM05D010841 ORTHO05D007789 2.5e-11 73.2 127 34.6
PGSC0003DMG402009490 Solanum tuberosum HOM05D010354 ORTHO05D012840 4.3e-11 72.4 162 36.4
Duzib187G0243 Durio zibethinus HOM05D016489 ORTHO05D007789 1.3e-10 70.9 125 36.0
Sed0015244 Sechium edule HOM05D008623 ORTHO05D007789 1.3e-10 70.9 121 35.5
CSS0011935 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 8.1e-10 68.2 106 41.5
Dinv41569 Davidia involucrata HOM05D008623 ORTHO05D007789 8.1e-10 68.2 119 38.7
PGSC0003DMG402028118 Solanum tuberosum HOM05D001907 ORTHO05D015557 2.4e-09 66.6 122 36.1
arahy.Tifrunner.gnm1.ann1.82LERJ Arachis hypogaea HOM05D010841 ORTHO05D007789 3.1e-09 66.2 119 31.9
Rhsim12G0026200 Rhododendron simsii HOM05D010787 ORTHO05D011812 3.1e-09 66.2 143 37.1
CSS0008468 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 4.0e-09 65.9 112 42.0
Sed0026611 Sechium edule HOM05D008623 ORTHO05D007789 4.0e-09 65.9 100 38.0
arahy.Tifrunner.gnm1.ann1.U7E3JB Arachis hypogaea HOM05D010841 ORTHO05D007789 6.9e-09 65.1 110 34.5
DCAR_007960 Daucus carota HOM05D014660 ORTHO05D016977 9.0e-09 64.7 127 37.0
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 2.0e-08 63.5 149 34.9
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 2.0e-08 63.5 140 36.4
CSS0019356 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 2.6e-08 63.2 108 38.0
Sed0001543 Sechium edule HOM05D008623 ORTHO05D007789 2.6e-08 63.2 151 35.8
BcaB08g36043 Brassica carinata HOM05D007210 ORTHO05D006152 3.4e-08 62.8 125 36.0
Lj1A773T40 Lonicera japonica HOM05D011954 ORTHO05D014236 3.4e-08 62.8 183 30.1
arahy.Tifrunner.gnm1.ann1.M6PJBU Arachis hypogaea HOM05D010841 ORTHO05D007789 7.6e-08 61.6 120 31.7
arahy.Tifrunner.gnm1.ann1.VD3B34 Arachis hypogaea HOM05D010841 ORTHO05D007789 7.6e-08 61.6 118 32.2
Lj1A798T45 Lonicera japonica HOM05D011954 ORTHO05D014236 7.6e-08 61.6 127 34.6
TWI73G0560 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 7.6e-08 61.6 164 33.5
TWI73G1234 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 7.6e-08 61.6 164 33.5
Rhsim10G0165100 Rhododendron simsii HOM05D009663 ORTHO05D007789 9.9e-08 61.2 95 36.8
Dinv25408 Davidia involucrata HOM05D000519 ORTHO05D035051 1.7e-07 60.5 106 35.8
Rhsim10G0206900 Rhododendron simsii HOM05D009663 ORTHO05D007789 1.7e-07 60.5 150 29.3
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 2.9e-07 59.7 132 35.6
BraA03t10618Z Brassica rapa HOM05D007210 ORTHO05D006152 2.9e-07 59.7 112 38.4
Rhsim12G0199400 Rhododendron simsii HOM05D009663 ORTHO05D007789 2.9e-07 59.7 109 34.9
Rhsim12G0034900 Rhododendron simsii HOM05D042119 ORTHO05D007789 3.8e-07 59.3 160 33.1
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 4.9e-07 58.9 132 34.8
arahy.Tifrunner.gnm1.ann1.IT7CRT Arachis hypogaea HOM05D010841 ORTHO05D007789 6.4e-07 58.5 112 38.4
arahy.Tifrunner.gnm1.ann1.73MM12 Arachis hypogaea HOM05D010841 ORTHO05D007789 8.4e-07 58.2 112 32.1
Carub.0007s2602 Capsella rubella HOM05D008242 ORTHO05D012602 8.4e-07 58.2 140 30.7
PGR142G3708 Punica granatum HOM05D008623 ORTHO05D007789 8.4e-07 58.2 101 37.6
Actinidia14014 Actinidia chinensis HOM05D008623 ORTHO05D010647 1.1e-06 57.8 133 33.8
arahy.Tifrunner.gnm1.ann1.G2WS8B Arachis hypogaea HOM05D010841 ORTHO05D007789 1.1e-06 57.8 112 38.4
Sed0015950 Sechium edule HOM05D034586 ORTHO05D007789 1.1e-06 57.8 139 29.5
arahy.Tifrunner.gnm1.ann1.UYW4TV Arachis hypogaea HOM05D010841 ORTHO05D007789 1.4e-06 57.4 112 37.5
BcaC01g06454 Brassica carinata HOM05D007210 ORTHO05D006152 1.9e-06 57.0 108 37.0
C03p15300 Brassica napus HOM05D007210 ORTHO05D006152 1.9e-06 57.0 108 37.0
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.9e-06 57.0 112 34.8
Lj7A643T21 Lonicera japonica HOM05D019260 ORTHO05D022860 1.9e-06 57.0 90 38.9
Peaxi162Scf00045g00629 Petunia axillaris HOM05D010354 ORTHO05D012840 1.9e-06 57.0 137 36.5
BcaNung05243 Brassica carinata HOM05D007210 ORTHO05D006152 2.4e-06 56.6 108 36.1
Dinv01174 Davidia involucrata HOM05D008623 ORTHO05D007789 2.4e-06 56.6 70 45.7
Sopen09g005440 Solanum pennellii HOM05D008744 ORTHO05D010647 2.4e-06 56.6 114 34.2
Sopen09g005480 Solanum pennellii HOM05D008744 ORTHO05D010647 2.4e-06 56.6 114 34.2
BraA10t43511Z Brassica rapa HOM05D007210 ORTHO05D006152 3.2e-06 56.2 104 36.5
CAN.G762.6 Capsicum annuum HOM05D008623 ORTHO05D007789 3.2e-06 56.2 109 37.6
Nitab4.5_0000613g0220 Nicotiana tabacum HOM05D010354 ORTHO05D012840 3.2e-06 56.2 162 30.2
BcaB01g04428 Brassica carinata HOM05D007210 ORTHO05D006152 4.2e-06 55.8 169 29.0
Rhsim13G0014700 Rhododendron simsii HOM05D009663 ORTHO05D007789 4.2e-06 55.8 111 34.2
A10p14180 Brassica napus HOM05D007210 ORTHO05D006152 5.4e-06 55.5 104 35.6
vmacro16961 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 5.4e-06 55.5 110 36.4
Rhsim03G0082100 Rhododendron simsii HOM05D008623 ORTHO05D007789 9.3e-06 54.7 93 36.6


User provided reference genes

Program Settings