Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p026828 Quercus lobata HOM05D008742 ORTHO05D010377 1.3e-160 569.7 283 100.0
Cfa008115 Carpinus fangiana HOM05D008742 ORTHO05D010377 3.5e-94 349.0 282 67.7
CiPaw.03G017300 Carya illinoinensis HOM05D008742 ORTHO05D010377 1.7e-93 346.7 292 63.4
CANSAT25G0509 Cannabis sativa HOM05D008742 ORTHO05D010377 3.7e-72 275.8 298 52.7
TAR628G0950 Trochodendron aralioides HOM05D008742 ORTHO05D010377 6.0e-70 268.5 289 52.2
Potri.013G102300 Populus trichocarpa HOM05D008742 ORTHO05D010377 6.8e-66 255.0 295 52.2
Manes.18G121000 Manihot esculenta HOM05D008742 ORTHO05D010377 1.9e-63 246.9 291 52.2
Ciclev10021221m.g Citrus clementina HOM05D008742 ORTHO05D010377 2.4e-63 246.5 337 45.7
Aqoxy6G00073 Aquilegia oxysepala HOM05D008742 ORTHO05D010377 5.1e-61 238.8 294 48.6
Gohir.D13G122200 Gossypium hirsutum HOM05D008742 ORTHO05D010377 5.6e-60 235.3 288 48.6
Gorai.013G136900 Gossypium raimondii HOM05D008742 ORTHO05D010377 6.2e-59 231.9 289 48.1
Gohir.A13G118401 Gossypium hirsutum HOM05D008742 ORTHO05D010377 4.4e-57 225.7 292 46.2
GSVIVG01025912001 Vitis vinifera HOM05D008742 ORTHO05D010377 4.4e-57 225.7 208 59.6
Thecc.08G171700 Theobroma cacao HOM05D008742 ORTHO05D010377 1.4e-55 220.7 287 47.7
PGR042G1068 Punica granatum HOM05D008742 ORTHO05D010377 2.4e-55 219.9 284 46.8
MBI03_g14517_MAGBIO Magnolia biondii HOM05D008742 ORTHO05D010377 2.7e-54 216.5 282 46.1
Sabra13G0088400 Salix brachista HOM05D008742 ORTHO05D010377 2.1e-51 206.8 352 42.0
Eucgr.F02959 Eucalyptus grandis HOM05D008742 ORTHO05D010377 4.7e-51 205.7 270 45.9
Nitab4.5_0001359g0010 Nicotiana tabacum HOM05D008742 ORTHO05D010377 4.0e-50 202.6 258 48.1
MELO3C022199.2 Cucumis melo HOM05D008742 ORTHO05D010377 1.3e-48 197.6 288 42.4
Nitab4.5_0001278g0110 Nicotiana tabacum HOM05D008742 ORTHO05D010377 1.7e-48 197.2 253 47.4
Solyc11g031970.2 Solanum lycopersicum HOM05D008742 ORTHO05D010377 2.9e-48 196.4 251 45.4
MSTRG.25490 Avicennia marina HOM05D008742 ORTHO05D010377 1.1e-47 194.5 250 46.4
Sopen11g014500 Solanum pennellii HOM05D008742 ORTHO05D010377 1.6e-46 190.7 252 45.2
PGSC0003DMG400031182 Solanum tuberosum HOM05D008742 ORTHO05D010377 1.0e-45 188.0 252 45.2
ClCG08G000630 Citrullus lanatus HOM05D008742 ORTHO05D010377 5.1e-45 185.7 253 44.3
ATR1136G217 Amborella trichopoda HOM05D008742 ORTHO05D010377 1.9e-44 183.7 231 48.1
PSO782G1932 Papaver somniferum HOM05D008742 ORTHO05D010377 5.6e-44 182.2 261 46.4
CsaV3_5G040230 Cucumis sativus L. HOM05D008742 ORTHO05D010377 1.6e-43 180.6 284 41.2
PSO170G1705 Papaver somniferum HOM05D008742 ORTHO05D010377 6.2e-43 178.7 267 43.8
Peaxi162Scf00688g00019 Petunia axillaris HOM05D008742 ORTHO05D010377 4.0e-42 176.0 265 41.9
TWI59G0981 Tripterygium wilfordii HOM05D008742 ORTHO05D010377 5.3e-42 175.6 283 40.3
Cc10_g16420 Coffea canephora HOM05D008742 ORTHO05D010377 6.0e-38 162.2 204 50.5
SalBow7G3290 Salvia bowleyana HOM05D008742 ORTHO05D010377 1.1e-36 157.9 256 39.8
Haze_13917 Corylus avellana HOM05D008742 ORTHO05D010377 9.6e-36 154.8 115 71.3
Cpa.g.sc21.53 Carica papaya HOM05D008742 ORTHO05D010377 2.4e-34 150.2 267 39.7
Migut.C01345 Erythranthe guttata HOM05D008742 ORTHO05D010377 9.9e-33 144.8 259 41.7
Dinv41793 Davidia involucrata HOM05D008742 ORTHO05D010377 9.3e-31 138.3 170 52.4
Sed0018339 Sechium edule HOM05D008742 ORTHO05D010377 1.3e-29 134.4 278 38.5
THA.LOC104815909 Tarenaya hassleriana HOM05D012304 ORTHO05D010377 5.8e-25 119.0 260 33.1
Duzib177G0721 Durio zibethinus HOM05D008742 ORTHO05D010377 6.0e-22 109.0 87 56.3
Carub.0006s2851 Capsella rubella HOM05D012304 ORTHO05D010377 1.9e-20 104.0 238 31.1
AL6G43670 Arabidopsis lyrata HOM05D012304 ORTHO05D010377 9.7e-20 101.7 236 30.1
Thhalv10028904m.g Eutrema salsugineum HOM05D012304 ORTHO05D010377 9.7e-20 101.7 235 30.2
Sp6g07500 Schrenkiella parvula HOM05D012304 ORTHO05D010377 2.2e-19 100.5 261 31.8
CDE07G1611 Ceratophyllum demersum HOM05D008742 ORTHO05D010377 4.8e-19 99.4 249 30.1
Aa31LG9G12020 Aethionema arabicum HOM05D012304 ORTHO05D010377 6.3e-19 99.0 235 32.8
AT4G09970 Arabidopsis thaliana HOM05D012304 ORTHO05D010377 1.0e-16 91.7 239 30.1
BcaB05g23938 Brassica carinata HOM05D012304 ORTHO05D010377 2.5e-12 77.0 270 26.7
SMO236G0128 Selaginella moellendorffii HOM05D008742 ORTHO05D010377 9.7e-12 75.1 228 31.1
SGA_v2.0_scaffold24G10618 Striga asiatica HOM05D000065 ORTHO05D000162 6.9e-10 68.9 105 40.0
A02p26830 Brassica napus HOM05D012304 ORTHO05D010377 1.4e-07 61.2 116 33.6
BolSC33t60634H Brassica oleracea HOM05D012304 ORTHO05D010377 1.4e-07 61.2 303 23.8
Mapoly0060s0075 Marchantia polymorpha HOM05D020309 ORTHO05D010377 1.4e-07 61.2 284 22.2
BraA02t07692Z Brassica rapa HOM05D012304 ORTHO05D010377 2.5e-07 60.5 276 22.5
CARHR260950 Cardamine hirsuta HOM05D012304 ORTHO05D010377 3.2e-07 60.1 125 32.0
Pp3c3_11780 Physcomitrium patens HOM05D020309 ORTHO05D010377 7.2e-07 58.9 267 22.8
Duzib177G0864 Durio zibethinus HOM05D008742 ORTHO05D010377 1.6e-06 57.8 53 62.3
BcaC03g16452 Brassica carinata HOM05D012304 ORTHO05D010377 3.6e-06 56.6 302 22.8
C02p42700 Brassica napus HOM05D012304 ORTHO05D010377 3.6e-06 56.6 302 22.8


User provided reference genes

Program Settings