Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p022430 Quercus lobata HOM05D007696 ORTHO05D009719 1.2e-110 403.3 210 100.0
CiPaw.15G127500 Carya illinoinensis HOM05D007696 ORTHO05D009719 6.0e-83 311.2 210 77.1
GSVIVG01008244001 Vitis vinifera HOM05D007696 ORTHO05D009719 1.5e-73 280.0 209 70.8
Cfa019805 Carpinus fangiana HOM05D007696 ORTHO05D009719 2.6e-70 269.2 199 73.9
Actinidia39813 Actinidia chinensis HOM05D007696 ORTHO05D009719 5.8e-70 268.1 208 67.8
FAN13G0134 Fragaria x ananassa HOM05D007696 ORTHO05D009719 6.4e-69 264.6 207 68.6
FAN08G1182 Fragaria x ananassa HOM05D007696 ORTHO05D009719 5.4e-68 261.5 207 67.6
RcHm_v2.0_Chr7g0184691 Rosa chinensis HOM05D007696 ORTHO05D009719 3.9e-66 255.4 207 68.1
TWI81G0276 Tripterygium wilfordii HOM05D007696 ORTHO05D009719 1.9e-65 253.1 203 69.5
Manes.01G020300 Manihot esculenta HOM05D007696 ORTHO05D009719 2.5e-65 252.7 201 68.7
FvH4_5g12640 Fragaria vesca HOM05D007696 ORTHO05D009719 3.3e-65 252.3 208 66.3
Lj9A429T50 Lonicera japonica HOM05D007696 ORTHO05D009719 1.2e-64 250.4 203 67.0
Atru.chr9.778 Acer truncatum HOM05D007696 ORTHO05D009719 4.7e-64 248.4 200 68.5
FAN18G3725 Fragaria x ananassa HOM05D007696 ORTHO05D009719 4.7e-64 248.4 208 66.3
Prupe.5G218000 Prunus persica HOM05D007696 ORTHO05D009719 4.7e-64 248.4 207 64.7
Dinv07368 Davidia involucrata HOM05D007696 ORTHO05D009719 5.2e-63 245.0 203 66.5
Potri.015G049800 Populus trichocarpa HOM05D007696 ORTHO05D009719 8.9e-63 244.2 203 66.0
Lalb_Chr19g0140261 Lupinus albus HOM05D007696 ORTHO05D009719 1.5e-62 243.4 208 62.5
FAN04G2461 Fragaria x ananassa HOM05D007696 ORTHO05D009719 9.9e-62 240.7 220 61.8
Cc04_g07460 Coffea canephora HOM05D007696 ORTHO05D009719 4.9e-61 238.4 203 63.1
CANSAT54G0455 Cannabis sativa HOM05D007696 ORTHO05D009719 1.9e-60 236.5 208 61.5
CANSAT54G2838 Cannabis sativa HOM05D007696 ORTHO05D009719 7.1e-60 234.6 208 61.5
COL.COLO4_16235 Corchorus olitorius HOM05D007696 ORTHO05D009719 4.6e-59 231.9 172 72.1
Gohir.D08G105400 Gossypium hirsutum HOM05D007696 ORTHO05D009719 2.3e-58 229.6 172 71.5
Gorai.004G112300 Gossypium raimondii HOM05D007696 ORTHO05D009719 2.3e-58 229.6 172 71.5
MD14G1222400 Malus domestica HOM05D007696 ORTHO05D009719 3.0e-58 229.2 202 62.4
Lsat_1_v5_gn_4_115821 Lactuca sativa HOM05D007696 ORTHO05D009719 3.9e-58 228.8 200 62.0
Gohir.A08G094200 Gossypium hirsutum HOM05D007696 ORTHO05D009719 8.7e-58 227.6 172 70.9
Thecc.03G029300 Theobroma cacao HOM05D007696 ORTHO05D009719 8.7e-58 227.6 172 70.9
Aqoxy3G03910 Aquilegia oxysepala HOM05D007696 ORTHO05D009719 1.5e-57 226.9 208 60.1
Duzib068G0054 Durio zibethinus HOM05D007696 ORTHO05D009719 4.8e-56 221.9 172 68.6
Sc04g0003700 Simmondsia chinensis HOM05D007696 ORTHO05D009719 1.1e-55 220.7 211 57.3
vmacro17668 Vaccinium macrocarpon HOM05D007696 ORTHO05D009719 3.1e-55 219.2 203 58.1
AUR62032195 Chenopodium quinoa HOM05D007696 ORTHO05D009719 2.6e-54 216.1 210 55.7
Phvul.011G012300 Phaseolus vulgaris HOM05D007696 ORTHO05D009719 4.9e-53 211.8 208 57.2
Ciclev10022427m.g Citrus clementina HOM05D007696 ORTHO05D009719 6.4e-53 211.5 172 66.3
Lj3g0018148 Lotus japonicus HOM05D007696 ORTHO05D009719 1.2e-51 207.2 208 57.2
ECA232G0656 Erigeron canadensis HOM05D007696 ORTHO05D009719 1.6e-51 206.8 203 53.2
arahy.Tifrunner.gnm1.ann1.ISQN6X Arachis hypogaea HOM05D007696 ORTHO05D009719 3.5e-51 205.7 203 59.1
TAR622G0575 Trochodendron aralioides HOM05D007696 ORTHO05D009719 3.5e-51 205.7 172 64.0
AUR62036960 Chenopodium quinoa HOM05D007696 ORTHO05D009719 1.3e-50 203.8 210 53.8
THA.LOC104821847 Tarenaya hassleriana HOM05D007696 ORTHO05D009719 3.0e-50 202.6 167 61.1
Oeu055893.1 Olea europaea HOM05D007696 ORTHO05D009719 1.9e-49 199.9 172 62.2
VMungo1127G1702 Vigna mungo HOM05D007696 ORTHO05D009719 1.9e-49 199.9 208 54.8
FAN18G2008 Fragaria x ananassa HOM05D007696 ORTHO05D009719 3.6e-48 195.7 234 51.3
TPR.G30177 Trifolium pratense HOM05D007696 ORTHO05D009719 4.8e-48 195.3 198 55.6
PSO063G6876 Papaver somniferum HOM05D007696 ORTHO05D009719 1.4e-47 193.7 201 56.2
MBI13_g27794_MAGBIO Magnolia biondii HOM05D007696 ORTHO05D009719 2.4e-47 193.0 178 59.6
Thhalv10027967m.g Eutrema salsugineum HOM05D007696 ORTHO05D009719 1.5e-46 190.3 167 58.1
BcaB01g01733 Brassica carinata HOM05D007696 ORTHO05D009719 3.4e-46 189.1 167 58.7
Nn4g23733 Nelumbo nucifera HOM05D007696 ORTHO05D009719 2.9e-45 186.0 208 52.4
Sp7g03680 Schrenkiella parvula HOM05D007696 ORTHO05D009719 8.4e-45 184.5 167 55.1
HanXRQChr09g0269891 Helianthus annuus HOM05D007696 ORTHO05D009719 1.6e-43 180.3 219 47.5
Glyma.09G227800 Glycine max HOM05D007696 ORTHO05D009719 2.1e-43 179.9 172 58.1
Hund10004 Selenicereus undatus HOM05D007696 ORTHO05D009719 4.6e-43 178.7 210 50.5
arahy.Tifrunner.gnm1.ann1.2ZW1BF Arachis hypogaea HOM05D007696 ORTHO05D009719 1.0e-42 177.6 238 48.7
Eucgr.K02660 Eucalyptus grandis HOM05D007696 ORTHO05D009719 1.9e-41 173.3 178 53.4
EL10Ac5g11256 Beta vulgaris HOM05D007696 ORTHO05D009719 5.6e-41 171.8 210 49.0
CAN.G438.120 Capsicum annuum HOM05D007696 ORTHO05D009719 8.1e-40 167.9 172 54.7
Psat7g166400 Pisum sativum HOM05D007696 ORTHO05D009719 8.1e-40 167.9 179 54.2
AT1G61415 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 1.9e-36 156.8 167 51.5
CARHR051130 Cardamine hirsuta HOM05D007696 ORTHO05D009719 4.6e-35 152.1 167 48.5
AL2G14870 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 3.0e-34 149.4 167 49.1
AL2G14920 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 5.1e-34 148.7 167 49.1
Medtr0085s0020 Medicago truncatula HOM05D007696 ORTHO05D009719 6.7e-34 148.3 142 56.3
Rhsim08G0136100 Rhododendron simsii HOM05D007696 ORTHO05D009719 1.5e-33 147.1 266 38.3
Cpa.g.sc13.41 Carica papaya HOM05D007696 ORTHO05D009719 4.8e-32 142.1 106 70.8
A09p26940 Brassica napus HOM05D007696 ORTHO05D009719 8.2e-32 141.4 167 46.1
BraA09t38264Z Brassica rapa HOM05D007696 ORTHO05D009719 8.2e-32 141.4 167 46.1
CSS0029722 Camellia sinensis var. sinensis HOM05D007696 ORTHO05D009719 2.4e-31 139.8 110 69.1
BcaC04g21230 Brassica carinata HOM05D007696 ORTHO05D009719 6.9e-31 138.3 167 45.5
C09p34110 Brassica napus HOM05D007696 ORTHO05D009719 6.9e-31 138.3 167 45.5
BolC9t56248H Brassica oleracea HOM05D007696 ORTHO05D009719 6.9e-31 138.3 167 45.5
Zm00001eb347780 Zea mays HOM05D007696 ORTHO05D009719 2.2e-29 133.3 201 42.8
Carub.0002s0377 Capsella rubella HOM05D007696 ORTHO05D009719 5.0e-29 132.1 167 46.1
DCAR_011551 Daucus carota HOM05D007696 ORTHO05D009719 2.5e-28 129.8 106 66.0
Hma1.2p1_0340F.1_g129840 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 1.0e-26 124.4 95 66.3
Hma1.2p1_0340F.1_g129846 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 1.0e-26 124.4 95 66.3
Os05g0275600 Oryza sativa ssp. japonica HOM05D007696 ORTHO05D009719 1.1e-25 120.9 200 42.0
Hma1.2p1_0340F.1_g129830 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 4.1e-23 112.5 74 77.0
Hma1.2p1_0340F.1_g129843 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 4.1e-23 112.5 74 77.0
Haze_18634 Corylus avellana HOM05D007696 ORTHO05D009719 1.9e-20 103.6 74 75.7
Sabra15G0078100 Salix brachista HOM05D007696 ORTHO05D009719 3.2e-20 102.8 101 55.4
CDE02G2124 Ceratophyllum demersum HOM05D007696 ORTHO05D009719 4.2e-20 102.4 101 56.4
AT1G61450 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 8.8e-18 94.7 103 51.5
Aa31LG8G5380 Aethionema arabicum HOM05D007696 ORTHO05D009719 1.5e-17 94.0 139 38.1
Lsat_1_v5_gn_9_67701 Lactuca sativa HOM05D007696 ORTHO05D009719 2.5e-17 93.2 58 84.5
VMungo0251G1113 Vigna mungo HOM05D007696 ORTHO05D009719 2.0e-09 67.0 70 51.4
AL2G14840 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 2.0e-06 57.0 61 42.6
ATR0317G063 Amborella trichopoda HOM05D007696 ORTHO05D009719 5.9e-06 55.5 86 38.4
Glyma.12G008800 Glycine max HOM05D007696 ORTHO05D009719 7.7e-06 55.1 42 54.8


User provided reference genes

Program Settings