Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 0.0e+00 1356.3 702 100.0
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 9.5e-234 813.9 709 66.1
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.1e-221 773.9 712 62.4
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 2.4e-221 772.7 824 57.0
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 3.0e-187 659.4 722 55.5
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 6.9e-184 648.3 711 54.3
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 1.5e-183 647.1 711 55.0
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 4.6e-180 635.6 710 53.0
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 6.4e-174 615.1 725 52.0
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 2.0e-167 593.6 521 65.5
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 2.6e-167 593.2 714 51.5
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 5.8e-167 592.0 711 50.9
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 1.1e-165 587.8 719 53.0
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 3.5e-164 582.8 713 50.8
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 7.9e-164 581.6 708 50.6
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 3.4e-159 566.2 797 46.9
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 5.9e-159 565.5 712 51.7
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 2.2e-153 547.0 728 49.2
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 6.3e-153 545.4 763 47.4
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 5.3e-152 542.3 763 47.2
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 1.3e-150 537.7 728 48.8
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 5.5e-149 532.3 768 46.4
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.6e-148 530.8 787 45.9
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 1.8e-147 527.3 710 47.9
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 8.8e-147 525.0 705 46.1
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.1e-146 524.6 711 47.0
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.0e-146 523.9 711 46.7
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 8.2e-145 518.5 711 46.7
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 1.1e-144 518.1 718 48.3
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.1e-144 518.1 717 47.0
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 3.1e-144 516.5 711 48.4
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 6.7e-139 498.8 728 46.7
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 1.7e-137 494.2 716 47.2
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.7e-137 493.0 722 45.4
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 1.8e-136 490.7 714 46.2
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.4e-136 490.3 720 45.0
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 1.6e-135 487.6 719 45.3
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 3.5e-135 486.5 719 45.2
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 6.5e-134 482.3 746 43.4
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 8.5e-134 481.9 681 47.0
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 7.2e-133 478.8 717 44.5
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.8e-131 474.2 733 45.4
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 7.5e-130 468.8 714 45.1
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.6e-127 461.1 698 45.4
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 2.2e-126 457.2 756 42.3
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 1.5e-125 454.5 720 46.5
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.6e-124 451.1 714 44.3
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 2.0e-122 444.1 728 43.7
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 2.6e-122 443.7 709 43.7
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 3.4e-122 443.4 732 43.7
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 5.7e-122 442.6 723 43.6
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 3.7e-121 439.9 728 43.4
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 3.7e-121 439.9 720 42.8
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 1.4e-120 438.0 745 40.9
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 1.4e-120 438.0 700 44.0
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 3.1e-120 436.8 719 41.3
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 4.1e-120 436.4 722 43.8
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.0e-119 434.1 720 43.2
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 4.5e-119 433.0 722 43.2
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 6.5e-118 429.1 717 42.4
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.6e-116 424.5 719 42.3
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.5e-114 417.9 714 42.2
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 1.8e-112 411.0 731 41.6
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 7.8e-111 405.6 709 41.7
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 2.3e-110 404.1 714 44.3
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 6.6e-110 402.5 719 40.5
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 9.5e-109 398.7 719 41.4
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 3.0e-107 393.7 633 44.4
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 6.8e-107 392.5 740 40.0
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 6.8e-107 392.5 635 44.3
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 8.9e-107 392.1 716 39.0
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 2.2e-105 387.5 702 40.5
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.9e-105 387.1 712 38.6
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 6.4e-105 386.0 691 44.1
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 7.0e-104 382.5 704 40.5
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 1.2e-103 381.7 716 39.2
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 6.0e-103 379.4 706 37.8
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 7.8e-103 379.0 723 38.6
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 7.8e-103 379.0 722 37.8
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 1.9e-101 374.4 715 39.4
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 3.3e-101 373.6 710 37.9
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.3e-101 373.6 617 42.0
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 4.7e-100 369.8 714 41.5
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 1.3e-97 361.7 722 37.8
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.1e-96 358.6 722 38.5
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 4.6e-95 353.2 737 37.9
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 6.6e-94 349.4 530 48.5
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 1.6e-92 344.7 746 38.2
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 4.4e-90 336.7 713 37.3
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 2.2e-89 334.3 671 41.0
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.7e-86 324.7 720 36.9
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 2.3e-86 324.3 718 36.4
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 5.2e-83 313.2 713 37.3
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.0e-82 311.2 720 35.6
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 1.1e-80 305.4 728 34.5
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.9e-80 304.7 713 35.5
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.9e-80 304.7 725 35.6
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 3.2e-80 303.9 712 35.5
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 5.4e-80 303.1 729 35.7
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 9.2e-80 302.4 718 34.5
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 3.5e-79 300.4 728 33.8
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.3e-78 298.5 722 35.5
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 3.9e-78 297.0 717 34.3
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 5.8e-74 283.1 721 34.7
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 4.3e-69 266.9 713 34.2
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 7.3e-69 266.2 605 35.2
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 7.3e-69 266.2 704 33.0
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 2.1e-68 264.6 723 32.6
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 3.6e-68 263.8 455 40.0
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 3.1e-67 260.8 699 33.5
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 1.2e-66 258.8 725 34.1
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 2.6e-66 257.7 718 33.7
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.3e-65 255.4 592 34.3
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 2.7e-63 247.7 718 31.8
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.3e-62 245.4 542 36.9
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.3e-62 245.4 800 32.0
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 3.0e-62 244.2 548 35.6
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 1.5e-61 241.9 550 37.1
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 4.3e-61 240.4 536 36.2
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 9.6e-61 239.2 414 40.1
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 9.6e-61 239.2 703 31.9
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 8.1e-60 236.1 714 32.9
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.1e-59 235.7 804 31.7
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 1.8e-59 235.0 723 31.4
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 2.4e-59 234.6 715 31.3
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 4.0e-59 233.8 550 34.7
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 9.9e-58 229.2 593 33.2
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.9e-56 224.9 600 34.7
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 4.2e-56 223.8 447 40.5
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 2.1e-55 221.5 448 37.9
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 6.0e-55 219.9 760 28.9
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 1.3e-54 218.8 699 29.8
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 1.8e-54 218.4 707 30.0
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 3.9e-54 217.2 387 39.3
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 5.6e-53 213.4 502 35.5
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 9.6e-53 212.6 557 33.8
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.3e-52 212.2 557 33.8
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 1.6e-52 211.8 552 32.2
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 1.6e-52 211.8 565 35.0
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.4e-51 208.8 725 31.4
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 3.1e-51 207.6 691 30.7
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 9.0e-51 206.1 549 32.2
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 9.0e-51 206.1 544 32.0
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 2.0e-50 204.9 549 32.2
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.1e-48 199.1 601 32.6
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 4.2e-48 197.2 411 36.7
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 1.6e-47 195.3 224 55.8
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 5.1e-46 190.3 644 30.9
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 6.7e-46 189.9 692 31.2
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 6.3e-44 183.3 554 33.0
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 6.3e-44 183.3 743 31.6
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 8.2e-44 183.0 712 29.6
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 6.5e-41 173.3 418 33.7
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 7.2e-40 169.9 611 29.8
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 7.2e-40 169.9 557 31.6
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 2.1e-39 168.3 639 29.3
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 3.6e-39 167.5 579 31.6
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 1.0e-38 166.0 266 43.6
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 1.1e-35 156.0 273 42.1
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 4.1e-35 154.1 270 42.2
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 9.1e-35 152.9 542 30.6
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 2.9e-33 147.9 373 33.5
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 6.5e-33 146.7 557 28.4
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 3.2e-32 144.4 324 34.6
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 5.5e-32 143.7 550 29.1
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 2.3e-30 138.3 550 30.4
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 5.7e-29 133.7 407 29.0
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.7e-28 132.1 535 27.9
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 5.3e-27 127.1 268 35.1
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 7.0e-27 126.7 320 33.4
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 8.5e-25 119.8 432 30.1
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 4.2e-24 117.5 310 32.9
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 6.1e-23 113.6 389 30.8
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 2.3e-22 111.7 304 33.6
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.1e-21 109.4 318 30.5
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.8e-20 104.8 225 36.4
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 6.3e-20 103.6 248 33.5
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 3.5e-18 97.8 525 24.2
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 2.2e-17 95.1 330 30.6
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 2.5e-16 91.7 311 30.2
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 1.2e-13 82.8 107 43.9
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.4e-13 81.3 248 30.2
MSTRG.7745 Avicennia marina HOM05D003672 ORTHO05D004121 8.5e-09 66.6 73 46.6
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 2.1e-07 62.0 429 23.5
unitig_749.g13433 Utricularia gibba HOM05D045476 ORTHO05D004121 1.8e-06 58.9 319 25.7
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 8.8e-06 56.6 383 25.3


User provided reference genes

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