Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p019061 Quercus lobata HOM05D000310 ORTHO05D338038 3.1e-71 271.6 125 100.0
QL02p077735 Quercus lobata HOM05D000270 ORTHO05D007107 8.8e-50 200.3 127 74.8
QL08p061173 Quercus lobata HOM05D000310 ORTHO05D000509 5.8e-17 91.3 47 76.6
Cfa001337 Carpinus fangiana HOM05D000310 ORTHO05D000509 1.6e-11 73.2 46 69.6
Cfa001429 Carpinus fangiana HOM05D000310 ORTHO05D000509 2.1e-11 72.8 46 67.4
Haze_17114 Corylus avellana HOM05D000310 ORTHO05D000509 3.1e-10 68.9 37 73.0
CiPaw.01G291100 Carya illinoinensis HOM05D000310 ORTHO05D000509 6.8e-10 67.8 47 61.7
SGA_v2.0_scaffold54G19440 Striga asiatica HOM05D000310 ORTHO05D000509 8.9e-10 67.4 45 55.6
SGA_v2.0_scaffold6G03133 Striga asiatica HOM05D000310 ORTHO05D000509 8.9e-10 67.4 45 55.6
Haze_17108 Corylus avellana HOM05D000310 ORTHO05D015535 2.0e-09 66.2 37 70.3
FAN05G3630 Fragaria x ananassa HOM05D000310 ORTHO05D000509 2.0e-09 66.2 49 53.1
FAN09G3979 Fragaria x ananassa HOM05D000310 ORTHO05D000509 2.0e-09 66.2 49 53.1
Psat3g136560 Pisum sativum HOM05D000310 ORTHO05D000509 3.4e-09 65.5 110 37.3
QL07p029837 Quercus lobata HOM05D000310 ORTHO05D000509 3.4e-09 65.5 49 53.1
FvH4_6g13140 Fragaria vesca HOM05D000310 ORTHO05D000509 4.4e-09 65.1 47 55.3
QL07p029196 Quercus lobata HOM05D000310 ORTHO05D000509 4.4e-09 65.1 49 53.1
MD04G1134500 Malus domestica HOM05D000310 ORTHO05D000509 5.8e-09 64.7 47 55.3
Peaxi162Scf00518g00059 Petunia axillaris HOM05D000310 ORTHO05D000509 5.8e-09 64.7 49 51.0
Nitab4.5_0000601g0010 Nicotiana tabacum HOM05D000310 ORTHO05D000509 7.5e-09 64.3 49 53.1
Hund13794 Selenicereus undatus HOM05D000310 ORTHO05D000509 7.5e-09 64.3 113 35.4
CAN.G229.21 Capsicum annuum HOM05D000310 ORTHO05D000509 9.9e-09 63.9 52 50.0
Eucgr.J01232 Eucalyptus grandis HOM05D000310 ORTHO05D000509 9.9e-09 63.9 46 54.3
Sp4g20100 Schrenkiella parvula HOM05D000310 ORTHO05D000509 9.9e-09 63.9 49 53.1
Aa31sc70G10 Aethionema arabicum HOM05D000310 ORTHO05D000509 1.3e-08 63.5 49 53.1
BcaB02g09256 Brassica carinata HOM05D000310 ORTHO05D000509 1.7e-08 63.2 47 55.3
Oeu001505.1 Olea europaea HOM05D000310 ORTHO05D000509 1.7e-08 63.2 38 60.5
PSO339G0399 Papaver somniferum HOM05D000310 ORTHO05D000509 1.7e-08 63.2 50 54.0
Prupe.6G260400 Prunus persica HOM05D000310 ORTHO05D000509 1.7e-08 63.2 49 51.0
BcaC02g11894 Brassica carinata HOM05D000310 ORTHO05D000509 2.2e-08 62.8 47 53.2
A05p08250 Brassica napus HOM05D000310 ORTHO05D000509 2.2e-08 62.8 47 53.2
C04p10210 Brassica napus HOM05D000310 ORTHO05D000509 2.2e-08 62.8 47 53.2
BolC4t22621H Brassica oleracea HOM05D000310 ORTHO05D000509 2.2e-08 62.8 47 53.2
BraA05t19790Z Brassica rapa HOM05D000310 ORTHO05D000509 2.2e-08 62.8 47 53.2
MD12G1148000 Malus domestica HOM05D000310 ORTHO05D000509 2.2e-08 62.8 52 46.2
Glyma.18G035900 Glycine max HOM05D000310 ORTHO05D000509 2.9e-08 62.4 35 62.9
Peaxi162Scf01198g00024 Petunia axillaris HOM05D000310 ORTHO05D000509 2.9e-08 62.4 49 51.0
Carub.0004s1967 Capsella rubella HOM05D000310 ORTHO05D000509 3.7e-08 62.0 49 49.0
FAN02G4552 Fragaria x ananassa HOM05D000310 ORTHO05D000509 3.7e-08 62.0 43 58.1
MD04G1134300 Malus domestica HOM05D000310 ORTHO05D000509 3.7e-08 62.0 38 63.2
Nitab4.5_0000601g0060 Nicotiana tabacum HOM05D000310 ORTHO05D000509 3.7e-08 62.0 49 49.0
Peaxi162Scf00771g00023 Petunia axillaris HOM05D000310 ORTHO05D000509 3.7e-08 62.0 49 49.0
AT2G37730 Arabidopsis thaliana HOM05D000310 ORTHO05D000509 4.9e-08 61.6 47 48.9
CiPaw.10G147800 Carya illinoinensis HOM05D000310 ORTHO05D000509 4.9e-08 61.6 49 49.0
Lj6g0001432 Lotus japonicus HOM05D000310 ORTHO05D000509 4.9e-08 61.6 37 59.5
Peaxi162Scf00435g00078 Petunia axillaris HOM05D000310 ORTHO05D000509 4.9e-08 61.6 37 59.5
GSVIVG01034119001 Vitis vinifera HOM05D000310 ORTHO05D000509 4.9e-08 61.6 49 51.0
ATR0559G244 Amborella trichopoda HOM05D000310 ORTHO05D000509 6.4e-08 61.2 45 55.6
ClCG10G021390 Citrullus lanatus HOM05D000310 ORTHO05D000509 6.4e-08 61.2 47 53.2
HanXRQChr15g0496561 Helianthus annuus HOM05D000310 ORTHO05D000509 6.4e-08 61.2 46 52.2
RcHm_v2.0_Chr3g0465521 Rosa chinensis HOM05D000310 ORTHO05D000509 6.4e-08 61.2 47 53.2
Thecc.05G034100 Theobroma cacao HOM05D000310 ORTHO05D000509 6.4e-08 61.2 43 53.5
CANSAT56G3519 Cannabis sativa HOM05D000310 ORTHO05D000509 8.3e-08 60.8 67 46.3
Lalb_Chr15g0084581 Lupinus albus HOM05D000310 ORTHO05D000509 8.3e-08 60.8 37 59.5
PGSC0003DMG400008896 Solanum tuberosum HOM05D000310 ORTHO05D000509 8.3e-08 60.8 52 46.2
Cfa021499 Carpinus fangiana HOM05D000310 ORTHO05D000509 1.1e-07 60.5 49 49.0
PSO339G4563 Papaver somniferum HOM05D000310 ORTHO05D000509 1.1e-07 60.5 47 46.8
PSO513G0197 Papaver somniferum HOM05D000310 ORTHO05D000509 1.1e-07 60.5 47 46.8
Solyc09g011090.3 Solanum lycopersicum HOM05D000310 ORTHO05D000509 1.1e-07 60.5 52 46.2
Aqoxy2G02335 Aquilegia oxysepala HOM05D000310 ORTHO05D000509 1.4e-07 60.1 49 46.9
CSS0010749 Camellia sinensis var. sinensis HOM05D000310 ORTHO05D000509 1.4e-07 60.1 49 49.0
CAN.G130.1 Capsicum annuum HOM05D000310 ORTHO05D000509 1.4e-07 60.1 79 36.7
ECA232G0863 Erigeron canadensis HOM05D000310 ORTHO05D000509 1.4e-07 60.1 45 51.1
MBI14_g11590_MAGBIO Magnolia biondii HOM05D000310 ORTHO05D000509 1.4e-07 60.1 43 58.1
Manes.10G026900 Manihot esculenta HOM05D000310 ORTHO05D000509 1.4e-07 60.1 43 58.1
Nitab4.5_0003982g0010 Nicotiana tabacum HOM05D000310 ORTHO05D017782 1.4e-07 60.1 37 59.5
Nitab4.5_0005068g0020 Nicotiana tabacum HOM05D000310 ORTHO05D000509 1.4e-07 60.1 40 55.0
Peaxi162Scf00518g00723 Petunia axillaris HOM05D000310 ORTHO05D000509 1.4e-07 60.1 47 46.8
Phvul.001G235100 Phaseolus vulgaris HOM05D000310 ORTHO05D000509 1.4e-07 60.1 68 39.7
TWI53G2098 Tripterygium wilfordii HOM05D000310 ORTHO05D000509 1.4e-07 60.1 49 49.0
VMungo1383G3189 Vigna mungo HOM05D000310 ORTHO05D000509 1.4e-07 60.1 68 39.7
CSS0036339 Camellia sinensis var. sinensis HOM05D000310 ORTHO05D000509 1.9e-07 59.7 44 54.5
Duzib128G0058 Durio zibethinus HOM05D000310 ORTHO05D000509 1.9e-07 59.7 43 51.2
RcHm_v2.0_Chr3g0465641 Rosa chinensis HOM05D000310 ORTHO05D000509 1.9e-07 59.7 38 55.3
Sed0001314 Sechium edule HOM05D000310 ORTHO05D000509 1.9e-07 59.7 47 48.9
Potri.016G101200 Populus trichocarpa HOM05D000310 ORTHO05D000509 2.4e-07 59.3 49 49.0
Sabra06G0067600 Salix brachista HOM05D000310 ORTHO05D000509 2.4e-07 59.3 43 58.1
Actinidia11279 Actinidia chinensis HOM05D000310 ORTHO05D000509 3.2e-07 58.9 47 48.9
AL4G34660 Arabidopsis lyrata HOM05D000310 ORTHO05D000509 3.2e-07 58.9 45 46.7
CARHR131800 Cardamine hirsuta HOM05D000310 ORTHO05D000509 3.2e-07 58.9 49 46.9
Ca_07344_v3 Cicer arietinum L. HOM05D000310 ORTHO05D000509 3.2e-07 58.9 45 53.3
Lj1g0011955 Lotus japonicus HOM05D000310 ORTHO05D000509 3.2e-07 58.9 103 37.9
Nitab4.5_0000601g0030 Nicotiana tabacum HOM05D000310 ORTHO05D000509 3.2e-07 58.9 36 61.1
Nitab4.5_0000722g0070 Nicotiana tabacum HOM05D000310 ORTHO05D000509 3.2e-07 58.9 40 55.0
PGR031G1270 Punica granatum HOM05D000310 ORTHO05D000509 3.2e-07 58.9 49 49.0
arahy.Tifrunner.gnm1.ann1.BDZ3HX Arachis hypogaea HOM05D000310 ORTHO05D000509 4.1e-07 58.5 68 38.2
Thhalv10017530m.g Eutrema salsugineum HOM05D000310 ORTHO05D000509 4.1e-07 58.5 37 56.8
PSO801G0717 Papaver somniferum HOM05D000310 ORTHO05D000509 4.1e-07 58.5 47 48.9
Peaxi162Scf00138g01711 Petunia axillaris HOM05D000310 ORTHO05D000509 4.1e-07 58.5 49 49.0
Peaxi162Scf00285g00717 Petunia axillaris HOM05D000310 ORTHO05D000509 4.1e-07 58.5 49 44.9
Peaxi162Scf00526g00016 Petunia axillaris HOM05D000310 ORTHO05D000509 4.1e-07 58.5 49 49.0
Potri.006G089150 Populus trichocarpa HOM05D000310 ORTHO05D000509 4.1e-07 58.5 43 55.8
CsaV3_3G034650 Cucumis sativus L. HOM05D000310 ORTHO05D000509 5.4e-07 58.2 47 48.9
Dinv26043 Davidia involucrata HOM05D000310 ORTHO05D000509 5.4e-07 58.2 78 30.8
Migut.L01958 Erythranthe guttata HOM05D000310 ORTHO05D000509 5.4e-07 58.2 47 46.8
TAR633G0238 Trochodendron aralioides HOM05D000310 ORTHO05D000509 5.4e-07 58.2 49 46.9
vmacro20183 Vaccinium macrocarpon HOM05D000310 ORTHO05D000509 5.4e-07 58.2 49 46.9
arahy.Tifrunner.gnm1.ann1.4KJ3L6 Arachis hypogaea HOM05D000310 ORTHO05D000509 7.1e-07 57.8 37 56.8
MELO3C009235.2 Cucumis melo HOM05D000310 ORTHO05D000509 7.1e-07 57.8 47 48.9
Nitab4.5_0000004g0010 Nicotiana tabacum HOM05D000310 ORTHO05D000509 7.1e-07 57.8 46 47.8
Nitab4.5_0001585g0020 Nicotiana tabacum HOM05D000310 ORTHO05D017782 7.1e-07 57.8 34 67.6
Oeu001853.1 Olea europaea HOM05D000310 ORTHO05D000509 7.1e-07 57.8 37 59.5
Peaxi162Scf01034g00010 Petunia axillaris HOM05D000310 ORTHO05D000509 7.1e-07 57.8 49 49.0
Atru.chr8.2032_Atru.chr8.2031 Acer truncatum HOM05D000310 ORTHO05D000509 9.2e-07 57.4 43 51.2
CANSAT35G0527 Cannabis sativa HOM05D000310 ORTHO05D000509 9.2e-07 57.4 37 56.8
Gohir.A13G092600 Gossypium hirsutum HOM05D000310 ORTHO05D000509 9.2e-07 57.4 43 48.8
Lalb_Chr03g0042431 Lupinus albus HOM05D000310 ORTHO05D000509 9.2e-07 57.4 49 46.9
MBI05_g35186_MAGBIO Magnolia biondii HOM05D000310 ORTHO05D002456 9.2e-07 57.4 50 46.0
Nitab4.5_0001016g0060 Nicotiana tabacum HOM05D000310 ORTHO05D000509 9.2e-07 57.4 46 47.8
Nitab4.5_0009481g0010 Nicotiana tabacum HOM05D000310 ORTHO05D000509 9.2e-07 57.4 49 46.9
CSS0008785 Camellia sinensis var. sinensis HOM05D000310 ORTHO05D002456 1.2e-06 57.0 52 38.5
Ca_08182_v3 Cicer arietinum L. HOM05D000310 ORTHO05D000509 1.2e-06 57.0 40 50.0
Dinv03377 Davidia involucrata HOM05D000310 ORTHO05D000509 1.2e-06 57.0 49 44.9
Dinv06755 Davidia involucrata HOM05D000310 ORTHO05D000509 1.2e-06 57.0 49 44.9
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 1.2e-06 57.0 37 54.1
Lj1A942G62 Lonicera japonica HOM05D000310 ORTHO05D000509 1.2e-06 57.0 37 51.4
Nn2g11222 Nelumbo nucifera HOM05D000310 ORTHO05D000509 1.2e-06 57.0 40 55.0
PSO732G0655 Papaver somniferum HOM05D000310 ORTHO05D000509 1.2e-06 57.0 40 52.5
Ciclev10031336m.g Citrus clementina HOM05D000310 ORTHO05D000509 1.6e-06 56.6 41 51.2
Peaxi162Scf01034g00011 Petunia axillaris HOM05D000310 ORTHO05D000509 1.6e-06 56.6 35 57.1
TWI77G0342 Tripterygium wilfordii HOM05D000310 ORTHO05D000509 1.6e-06 56.6 43 53.5
Ciclev10011508m.g Citrus clementina HOM05D000310 ORTHO05D000509 2.1e-06 56.2 47 46.8
Gorai.001G249900 Gossypium raimondii HOM05D000310 ORTHO05D000509 2.1e-06 56.2 101 29.7
MD01G1138900 Malus domestica HOM05D000310 ORTHO05D000509 2.1e-06 56.2 37 59.5
Medtr3g068125 Medicago truncatula HOM05D000310 ORTHO05D000509 2.1e-06 56.2 37 54.1
AUR62012134 Chenopodium quinoa HOM05D000310 ORTHO05D000509 2.7e-06 55.8 40 52.5
PSO339G4948 Papaver somniferum HOM05D000310 ORTHO05D000509 2.7e-06 55.8 37 56.8
RcHm_v2.0_Chr1g0368271 Rosa chinensis HOM05D000310 ORTHO05D000509 2.7e-06 55.8 72 44.4
SalBow4G3194 Salvia bowleyana HOM05D000310 ORTHO05D000509 2.7e-06 55.8 37 54.1
Actinidia23674 Actinidia chinensis HOM05D000310 ORTHO05D000509 3.5e-06 55.5 37 54.1
Hma1.2p1_0766F.1_g215290 Hydrangea macrophylla HOM05D000310 ORTHO05D000509 3.5e-06 55.5 37 54.1
Nn2g13463 Nelumbo nucifera HOM05D000310 ORTHO05D002456 3.5e-06 55.5 49 42.9
PSO063G5490 Papaver somniferum HOM05D000310 ORTHO05D000509 3.5e-06 55.5 73 37.0
TPR.G2850 Trifolium pratense HOM05D000310 ORTHO05D000509 3.5e-06 55.5 37 48.6
TWI63G0640 Tripterygium wilfordii HOM05D000310 ORTHO05D000509 3.5e-06 55.5 37 56.8
GSVIVG01016494001 Vitis vinifera HOM05D000310 ORTHO05D000509 3.5e-06 55.5 47 46.8
Migut.F01273 Erythranthe guttata HOM05D000310 ORTHO05D000509 4.6e-06 55.1 35 57.1
Manes.08G088600 Manihot esculenta HOM05D000310 ORTHO05D000509 4.6e-06 55.1 37 54.1
Oeu031358.1 Olea europaea HOM05D000310 ORTHO05D000509 4.6e-06 55.1 34 55.9
Prupe.4G260000 Prunus persica HOM05D000310 ORTHO05D002456 4.6e-06 55.1 50 40.0
Aqoxy1G00861 Aquilegia oxysepala HOM05D000310 ORTHO05D000509 6.0e-06 54.7 46 47.8
arahy.Tifrunner.gnm1.ann1.7M9FN4 Arachis hypogaea HOM05D000310 ORTHO05D000509 6.0e-06 54.7 38 52.6
AUR62040702 Chenopodium quinoa HOM05D000310 ORTHO05D000509 6.0e-06 54.7 40 50.0
Atru.chr12.367 Acer truncatum HOM05D000310 ORTHO05D000509 7.8e-06 54.3 42 45.2
Atru.chr12.384 Acer truncatum HOM05D000310 ORTHO05D000509 7.8e-06 54.3 42 45.2
ATR0559G348 Amborella trichopoda HOM05D000310 ORTHO05D002456 7.8e-06 54.3 82 32.9
Cc02_g07460 Coffea canephora HOM05D000310 ORTHO05D000509 7.8e-06 54.3 40 50.0
Lj8C79T6 Lonicera japonica HOM05D000310 ORTHO05D015535 7.8e-06 54.3 43 46.5
Nn2g11223 Nelumbo nucifera HOM05D000310 ORTHO05D000509 7.8e-06 54.3 41 51.2
Psat0s1294g0160 Pisum sativum HOM05D000310 ORTHO05D000509 7.8e-06 54.3 37 48.6


User provided reference genes

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