Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.6e-49 199.1 102 100.0
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.2e-35 152.1 89 83.1
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 5.5e-34 147.5 88 85.2
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 1.3e-30 136.3 84 79.8
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.3e-30 136.3 83 81.9
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.2e-30 135.6 85 78.8
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 2.8e-30 135.2 83 80.7
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 3.7e-30 134.8 84 81.0
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 4.8e-30 134.4 85 78.8
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 8.3e-30 133.7 91 74.7
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.4e-29 132.9 85 76.5
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.4e-29 132.9 88 75.0
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.4e-29 132.1 85 76.5
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.4e-29 132.1 95 72.6
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 2.4e-29 132.1 83 78.3
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 2.4e-29 132.1 83 78.3
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 2.4e-29 132.1 83 78.3
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 3.1e-29 131.7 86 73.3
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.1e-29 131.7 84 77.4
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 4.1e-29 131.3 85 75.3
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 7.0e-29 130.6 84 76.2
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 7.0e-29 130.6 88 73.9
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 9.1e-29 130.2 90 72.2
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 9.1e-29 130.2 83 78.3
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.2e-28 129.8 83 79.5
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 1.2e-28 129.8 91 74.7
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 1.2e-28 129.8 83 75.9
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.6e-28 129.4 85 75.3
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.6e-28 129.4 85 75.3
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 2.0e-28 129.0 83 74.7
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 3.5e-28 128.3 85 71.8
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 4.5e-28 127.9 83 73.5
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 4.5e-28 127.9 85 77.6
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 4.5e-28 127.9 89 71.9
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 5.9e-28 127.5 83 72.3
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 5.9e-28 127.5 82 78.0
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 5.9e-28 127.5 85 70.6
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 5.9e-28 127.5 90 68.9
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 7.7e-28 127.1 87 70.1
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 7.7e-28 127.1 83 77.1
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.0e-27 126.7 86 72.1
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.3e-27 126.3 83 77.1
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.7e-27 125.9 82 74.4
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.7e-27 125.9 89 69.7
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.7e-27 125.9 88 71.6
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 2.9e-27 125.2 88 69.3
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 2.9e-27 125.2 83 75.9
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 3.8e-27 124.8 81 75.3
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.8e-27 124.8 86 73.3
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 3.8e-27 124.8 89 70.8
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 5.0e-27 124.4 84 73.8
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 8.6e-27 123.6 89 69.7
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.1e-26 123.2 92 65.2
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.5e-26 122.9 83 72.3
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.5e-26 122.9 83 72.3
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 1.5e-26 122.9 84 71.4
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.9e-26 122.5 83 72.3
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.9e-26 122.5 82 73.2
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 2.5e-26 122.1 88 65.9
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.3e-26 121.7 83 72.3
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 4.2e-26 121.3 86 69.8
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 4.2e-26 121.3 83 69.9
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 7.2e-26 120.6 83 71.1
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 7.2e-26 120.6 88 65.9
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 7.2e-26 120.6 92 64.1
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 7.2e-26 120.6 81 72.8
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 7.2e-26 120.6 87 67.8
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 9.5e-26 120.2 83 71.1
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 9.5e-26 120.2 84 66.7
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.6e-25 119.4 84 71.4
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 2.1e-25 119.0 84 69.0
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 2.8e-25 118.6 78 75.6
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 2.8e-25 118.6 88 64.8
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 2.8e-25 118.6 83 68.7
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.7e-25 117.9 92 62.0
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.7e-25 117.9 83 69.9
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 8.0e-25 117.1 84 67.9
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 8.0e-25 117.1 91 62.6
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.8e-24 115.9 84 65.5
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 2.3e-24 115.5 88 63.6
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 2.3e-24 115.5 88 62.5
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.0e-24 114.8 88 62.5
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 5.2e-24 114.4 87 63.2
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 6.8e-24 114.0 85 68.2
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 6.8e-24 114.0 88 63.6
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 6.8e-24 114.0 88 63.6
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 2.2e-22 109.0 84 60.7
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 2.8e-22 108.6 80 70.0
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.8e-22 108.6 78 71.8
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 3.7e-22 108.2 69 72.5
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 3.7e-22 108.2 84 61.9
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 4.9e-22 107.8 81 69.1
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.1e-21 106.7 84 59.5
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.8e-21 105.9 69 73.9
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 1.2e-20 103.2 86 60.5
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 1.2e-20 103.2 88 56.8
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 2.7e-20 102.1 83 61.4
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 7.8e-20 100.5 66 72.7
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 1.0e-19 100.1 90 52.2
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 2.9e-19 98.6 80 62.5
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 3.8e-19 98.2 83 57.8
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 3.8e-19 98.2 83 57.8
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.1e-18 96.7 61 77.0
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-18 96.7 82 54.9
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 1.1e-18 96.7 82 54.9
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.5e-18 96.3 83 55.4
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 3.3e-18 95.1 83 55.4
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 3.3e-18 95.1 62 71.0
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.3e-18 95.1 88 53.4
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 3.3e-18 95.1 82 56.1
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.6e-18 94.4 64 71.9
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 7.3e-18 94.0 81 56.8
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-17 92.8 82 53.7
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 2.1e-17 92.4 82 53.7
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 2.8e-17 92.0 82 53.7
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.6e-17 91.7 86 57.0
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 4.7e-17 91.3 82 52.4
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 4.7e-17 91.3 82 53.7
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 4.7e-17 91.3 82 52.4
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 4.7e-17 91.3 82 53.7
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.0e-16 90.1 82 52.4
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-16 90.1 82 52.4
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-16 90.1 82 53.7
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.0e-16 90.1 82 52.4
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 1.0e-16 90.1 73 57.5
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 1.4e-16 89.7 82 52.4
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 1.8e-16 89.4 82 52.4
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 1.8e-16 89.4 82 52.4
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 4.0e-16 88.2 84 53.6
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 6.8e-16 87.4 85 54.1
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 6.8e-16 87.4 85 54.1
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 8.9e-16 87.0 82 51.2
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 1.2e-15 86.7 82 51.2
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-15 86.7 82 50.0
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-15 86.7 82 51.2
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 1.2e-15 86.7 82 51.2
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 2.6e-15 85.5 85 52.9
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 3.4e-15 85.1 78 55.1
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 5.8e-15 84.3 60 66.7
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 8.3e-14 80.5 81 54.3
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 4.1e-13 78.2 59 64.4
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.2e-12 76.6 89 48.3
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 7.8e-12 73.9 80 43.8
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 5.0e-11 71.2 73 52.1
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 2.1e-09 65.9 82 47.6
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 2.1e-09 65.9 56 62.5
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.4e-08 63.2 65 43.1
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.6e-07 58.9 69 44.9
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 1.7e-06 56.2 80 35.0
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 3.7e-06 55.1 33 81.8
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 3.7e-06 55.1 33 84.8


User provided reference genes

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