Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p017873 Quercus lobata HOM05D005122 ORTHO05D006057 5.6e-147 524.2 261 100.0
QL11p002844 Quercus lobata HOM05D005122 ORTHO05D006057 2.2e-74 283.1 157 92.4
QL10p017739 Quercus lobata HOM05D005122 ORTHO05D006057 1.3e-58 230.7 135 90.4
Haze_26065 Corylus avellana HOM05D005122 ORTHO05D006057 1.2e-56 224.2 157 75.8
CiPaw.03G200700 Carya illinoinensis HOM05D005122 ORTHO05D006057 7.7e-56 221.5 157 72.0
Dinv42429 Davidia involucrata HOM05D005122 ORTHO05D006057 4.2e-46 189.1 163 62.6
arahy.Tifrunner.gnm1.ann1.EYQ1XG Arachis hypogaea HOM05D005122 ORTHO05D006057 8.0e-45 184.9 163 58.9
Prupe.7G192500 Prunus persica HOM05D005122 ORTHO05D006057 8.0e-45 184.9 157 62.4
Atru.chr7.1762 Acer truncatum HOM05D005122 ORTHO05D006057 1.8e-44 183.7 163 58.9
arahy.Tifrunner.gnm1.ann1.C788P2 Arachis hypogaea HOM05D005122 ORTHO05D006057 1.8e-44 183.7 163 58.3
CSS0025527 Camellia sinensis var. sinensis HOM05D005122 ORTHO05D006057 2.0e-43 180.3 163 60.7
Duzib168G0854 Durio zibethinus HOM05D005122 ORTHO05D006057 4.4e-43 179.1 152 63.8
Ciclev10007237m.g Citrus clementina HOM05D005122 ORTHO05D006057 1.3e-42 177.6 157 61.8
COL.COLO4_21211 Corchorus olitorius HOM05D005122 ORTHO05D006057 8.3e-42 174.9 157 60.5
Thecc.09G070600 Theobroma cacao HOM05D005122 ORTHO05D006057 8.3e-42 174.9 157 60.5
TPR.G12583 Trifolium pratense HOM05D005122 ORTHO05D006057 1.4e-41 174.1 184 51.1
CANSAT56G0085 Cannabis sativa HOM05D005122 ORTHO05D006057 1.8e-41 173.7 157 56.7
vmacro06355 Vaccinium macrocarpon HOM05D005122 ORTHO05D006057 1.8e-41 173.7 163 58.3
Cfa002940 Carpinus fangiana HOM05D005122 ORTHO05D006057 4.1e-41 172.6 118 75.4
TWI34G1091 Tripterygium wilfordii HOM05D005122 ORTHO05D006057 4.1e-41 172.6 160 57.5
CANSAT56G2058 Cannabis sativa HOM05D005122 ORTHO05D006057 5.4e-41 172.2 157 55.4
Gohir.D05G037400 Gossypium hirsutum HOM05D005122 ORTHO05D006057 7.0e-41 171.8 157 57.3
Gohir.A05G035900 Gossypium hirsutum HOM05D005122 ORTHO05D006057 2.0e-40 170.2 157 57.3
Ca_21337_v3 Cicer arietinum L. HOM05D005122 ORTHO05D006057 2.7e-40 169.9 163 57.1
Ca_30968_v3 Cicer arietinum L. HOM05D005122 ORTHO05D006057 2.7e-40 169.9 163 57.1
GSVIVG01015020001 Vitis vinifera HOM05D005122 ORTHO05D006057 2.7e-40 169.9 163 57.1
Lj4A920G55 Lonicera japonica HOM05D005122 ORTHO05D006057 3.5e-40 169.5 158 58.9
Gorai.009G037900 Gossypium raimondii HOM05D005122 ORTHO05D006057 5.9e-40 168.7 157 56.7
Glyma.17G045900 Glycine max HOM05D005122 ORTHO05D006057 1.3e-39 167.5 163 54.0
Medtr4g124670 Medicago truncatula HOM05D005122 ORTHO05D006057 8.6e-39 164.9 163 54.6
Lalb_Chr13g0299211 Lupinus albus HOM05D005122 ORTHO05D006057 2.5e-38 163.3 163 53.4
Lj4g0009327 Lotus japonicus HOM05D005122 ORTHO05D006057 7.3e-38 161.8 163 55.8
MD02G1100300 Malus domestica HOM05D005122 ORTHO05D006057 7.3e-38 161.8 157 58.6
Rhsim03G0225900 Rhododendron simsii HOM05D005122 ORTHO05D006057 4.7e-37 159.1 157 56.1
Glyma.13G113900 Glycine max HOM05D005122 ORTHO05D006057 1.8e-36 157.1 163 50.9
Psat4g019280 Pisum sativum HOM05D005122 ORTHO05D006057 7.5e-35 151.8 163 52.1
PGR142G3115 Punica granatum HOM05D005122 ORTHO05D006057 1.3e-34 151.0 157 51.0
Potri.006G136900 Populus trichocarpa HOM05D005122 ORTHO05D006057 3.7e-34 149.4 163 54.0
VMungo1215G1386 Vigna mungo HOM05D005122 ORTHO05D006057 3.7e-34 149.4 164 51.8
Manes.16G092800 Manihot esculenta HOM05D005122 ORTHO05D006057 4.9e-34 149.1 157 54.1
THA.LOC104811288 Tarenaya hassleriana HOM05D005122 ORTHO05D006057 8.3e-34 148.3 157 49.7
FvH4_1g09310 Fragaria vesca HOM05D005122 ORTHO05D006057 4.1e-33 146.0 170 51.8
FAN19G2002 Fragaria x ananassa HOM05D005122 ORTHO05D006057 7.0e-33 145.2 164 53.0
AL5G12790 Arabidopsis lyrata HOM05D005122 ORTHO05D006057 2.0e-32 143.7 157 49.0
Thhalv10012418m.g Eutrema salsugineum HOM05D005122 ORTHO05D006057 2.0e-32 143.7 157 49.0
Sp6g27400 Schrenkiella parvula HOM05D005122 ORTHO05D006057 7.8e-32 141.7 157 47.8
Cc06_g12660 Coffea canephora HOM05D005122 ORTHO05D006057 1.3e-31 141.0 157 51.6
Nn8g38537 Nelumbo nucifera HOM05D005122 ORTHO05D006057 2.3e-31 140.2 158 53.2
FAN23G0697 Fragaria x ananassa HOM05D005122 ORTHO05D006057 3.0e-31 139.8 164 51.8
Nitab4.5_0007169g0020 Nicotiana tabacum HOM05D005122 ORTHO05D006057 3.9e-31 139.4 163 52.8
ClCG11G000010 Citrullus lanatus HOM05D005122 ORTHO05D006057 6.6e-31 138.7 158 49.4
BcaC04g18854 Brassica carinata HOM05D005122 ORTHO05D006057 2.5e-30 136.7 157 46.5
A10p22480 Brassica napus HOM05D005122 ORTHO05D006057 2.5e-30 136.7 157 47.1
Eucgr.C00770 Eucalyptus grandis HOM05D005122 ORTHO05D006057 2.5e-30 136.7 157 49.7
Sed0023749 Sechium edule HOM05D005122 ORTHO05D006057 2.5e-30 136.7 157 49.7
Aa31LG4G13020 Aethionema arabicum HOM05D005122 ORTHO05D006057 3.3e-30 136.3 158 45.6
MELO3C022901.2 Cucumis melo HOM05D005122 ORTHO05D006057 3.3e-30 136.3 158 50.0
PSO421G0465 Papaver somniferum HOM05D005122 ORTHO05D006057 3.3e-30 136.3 157 51.6
EL10Ac8g18978 Beta vulgaris HOM05D005122 ORTHO05D006057 4.3e-30 136.0 159 48.4
C09p60330 Brassica napus HOM05D005122 ORTHO05D006057 4.3e-30 136.0 157 46.5
CsaV3_5G027680 Cucumis sativus L. HOM05D005122 ORTHO05D006057 7.3e-30 135.2 158 48.7
AT2G03140 Arabidopsis thaliana HOM05D005122 ORTHO05D006057 1.2e-29 134.4 157 47.1
FAN28G0954 Fragaria x ananassa HOM05D005122 ORTHO05D006057 1.6e-29 134.0 164 51.2
Nitab4.5_0000170g0030 Nicotiana tabacum HOM05D005122 ORTHO05D006057 1.6e-29 134.0 163 53.4
BraA10t44307Z Brassica rapa HOM05D005122 ORTHO05D006057 4.7e-29 132.5 156 46.8
Rhsim05G0002500 Rhododendron simsii HOM05D005122 ORTHO05D006057 6.2e-29 132.1 160 48.1
Sc08g0009130 Simmondsia chinensis HOM05D005122 ORTHO05D006057 6.2e-29 132.1 185 42.2
Sabra06G0107000 Salix brachista HOM05D005122 ORTHO05D006057 1.0e-28 131.3 213 41.3
CARHR152570 Cardamine hirsuta HOM05D005122 ORTHO05D006057 4.0e-28 129.4 157 44.6
Ah.14g084680 Amaranthus hybridus HOM05D005122 ORTHO05D006057 2.0e-27 127.1 157 47.1
AUR62025308 Chenopodium quinoa HOM05D005122 ORTHO05D006057 2.0e-27 127.1 157 45.9
Peaxi162Scf00191g00046 Petunia axillaris HOM05D005122 ORTHO05D006057 2.6e-27 126.7 163 50.3
Carub.0005s0197 Capsella rubella HOM05D005122 ORTHO05D006057 3.4e-27 126.3 157 48.4
CAN.G210.4 Capsicum annuum HOM05D005122 ORTHO05D006057 3.4e-27 126.3 163 47.9
AUR62028313 Chenopodium quinoa HOM05D005122 ORTHO05D006057 5.8e-27 125.6 157 45.9
PSO104G0049 Papaver somniferum HOM05D005122 ORTHO05D006057 5.8e-27 125.6 157 47.8
MSTRG.19429 Avicennia marina HOM05D005122 ORTHO05D006057 7.5e-27 125.2 157 50.3
RcHm_v2.0_Chr2g0095891 Rosa chinensis HOM05D005122 ORTHO05D006057 9.8e-27 124.8 168 46.4
Solyc07g042500.4 Solanum lycopersicum HOM05D005122 ORTHO05D006057 1.3e-26 124.4 166 47.0
BolC9t58866H Brassica oleracea HOM05D005122 ORTHO05D006057 3.7e-26 122.9 151 44.4
SGA_v2.0_scaffold31G12693 Striga asiatica HOM05D005122 ORTHO05D006057 3.7e-26 122.9 157 50.3
Aqoxy7G00978 Aquilegia oxysepala HOM05D005122 ORTHO05D006057 6.4e-26 122.1 157 48.4
SalBow6G0425 Salvia bowleyana HOM05D005122 ORTHO05D006057 8.3e-26 121.7 175 46.3
TAR624G1201 Trochodendron aralioides HOM05D005122 ORTHO05D006057 1.1e-25 121.3 92 69.6
ATR0681G090 Amborella trichopoda HOM05D005122 ORTHO05D006057 5.4e-25 119.0 187 40.6
Hund26106 Selenicereus undatus HOM05D005122 ORTHO05D006057 9.2e-25 118.2 157 43.3
DCAR_028528 Daucus carota HOM05D005122 ORTHO05D006057 1.2e-24 117.9 159 46.5
Sopen07g022170 Solanum pennellii HOM05D005122 ORTHO05D006057 1.2e-24 117.9 166 45.2
PGSC0003DMG400013574 Solanum tuberosum HOM05D005122 ORTHO05D006057 1.2e-24 117.9 163 46.0
MBI19_g37996_MAGBIO Magnolia biondii HOM05D005122 ORTHO05D006057 1.0e-23 114.8 161 47.2
Oeu045002.1 Olea europaea HOM05D005122 ORTHO05D006057 1.3e-23 114.4 157 43.3
Migut.J00884 Erythranthe guttata HOM05D005122 ORTHO05D006057 1.7e-23 114.0 157 46.5
Lsat_1_v5_gn_5_139061 Lactuca sativa HOM05D005122 ORTHO05D006057 1.7e-23 114.0 165 42.4
Phvul.003G127600 Phaseolus vulgaris HOM05D005122 ORTHO05D006057 3.9e-23 112.8 163 45.4
Zm00001eb313890 Zea mays HOM05D005122 ORTHO05D006057 2.5e-22 110.2 164 44.5
MD15G1223300 Malus domestica HOM05D005122 ORTHO05D006057 5.8e-19 99.0 90 57.8
CDE04G2636 Ceratophyllum demersum HOM05D005122 ORTHO05D006057 4.3e-14 82.8 174 35.6
ECA234G0156 Erigeron canadensis HOM05D005122 ORTHO05D006057 4.3e-14 82.8 163 35.0
HanXRQChr10g0319771 Helianthus annuus HOM05D005122 ORTHO05D006057 7.3e-14 82.0 154 39.0
HPP92_016227 Vanilla planifolia HOM05D005122 ORTHO05D006057 1.6e-13 80.9 178 33.1
unitig_27.g24782 Utricularia gibba HOM05D005122 ORTHO05D006057 1.8e-12 77.4 157 34.4
Mapoly0027s0173 Marchantia polymorpha HOM05D005122 ORTHO05D006057 1.1e-06 58.2 192 28.1
QL04p042086 Quercus lobata HOM05D000003 ORTHO05D000006 1.5e-06 57.8 52 53.8
MD15G1223200 Malus domestica HOM05D005122 ORTHO05D006057 1.9e-06 57.4 36 72.2
QL02p033301 Quercus lobata HOM05D000003 ORTHO05D000004 4.3e-06 56.2 52 53.8


User provided reference genes

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